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Asym. Unit
Info
Asym.Unit (86 KB)
Biol.Unit 1 (157 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF MOUSE NECTIN-2 EXTRACELLULAR FRAGMENT D1-D2
Authors
:
O. J. Harrison, J. Brasch, L. Shapiro
Date
:
17 Jun 12 (Deposition) - 22 Aug 12 (Release) - 26 Sep 12 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.56
Chains
:
Asym. Unit : A
Biol. Unit 1: A (2x)
Keywords
:
Immunoglobulin-Like Domain, Ig Domain, Viral Entry Receptor, Cell Adhesion
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
O. J. Harrison, J. Vendome, J. Brasch, X. Jin, S. Hong, P. S. Katsamba, G. Ahlsen, R. B. Troyanovsky, S. M. Troyanovsky, B. Honig, L. Shapiro
Nectin Ectodomain Structures Reveal A Canonical Adhesive Interface.
Nat. Struct. Mol. Biol. V. 19 906 2012
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Hetero Components
(5, 15)
Info
All Hetero Components
1a: BETA-D-MANNOSE (BMAa)
1b: BETA-D-MANNOSE (BMAb)
2a: CADMIUM ION (CDa)
2b: CADMIUM ION (CDb)
2c: CADMIUM ION (CDc)
2d: CADMIUM ION (CDd)
3a: ALPHA-L-FUCOSE (FUCa)
3b: ALPHA-L-FUCOSE (FUCb)
4a: ALPHA-D-MANNOSE (MANa)
4b: ALPHA-D-MANNOSE (MANb)
4c: ALPHA-D-MANNOSE (MANc)
5a: N-ACETYL-D-GLUCOSAMINE (NAGa)
5b: N-ACETYL-D-GLUCOSAMINE (NAGb)
5c: N-ACETYL-D-GLUCOSAMINE (NAGc)
5d: N-ACETYL-D-GLUCOSAMINE (NAGd)
View:
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Label:
No.
Name
Count
Type
Full Name
1
BMA
2
Ligand/Ion
BETA-D-MANNOSE
2
CD
4
Ligand/Ion
CADMIUM ION
3
FUC
2
Ligand/Ion
ALPHA-L-FUCOSE
4
MAN
3
Ligand/Ion
ALPHA-D-MANNOSE
5
NAG
4
Ligand/Ion
N-ACETYL-D-GLUCOSAMINE
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Sites
(15, 15)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
THR A:61 , GLU A:62 , PRO A:89 , ASN A:138 , NAG A:302 , FUC A:306
BINDING SITE FOR RESIDUE NAG A 301
02
AC2
SOFTWARE
ASN A:90 , SER A:91 , NAG A:301 , BMA A:303
BINDING SITE FOR RESIDUE NAG A 302
03
AC3
SOFTWARE
NAG A:302 , MAN A:304 , MAN A:305
BINDING SITE FOR RESIDUE BMA A 303
04
AC4
SOFTWARE
SER A:91 , GLN A:92 , BMA A:303
BINDING SITE FOR RESIDUE MAN A 304
05
AC5
SOFTWARE
BMA A:303
BINDING SITE FOR RESIDUE MAN A 305
06
AC6
SOFTWARE
THR A:75 , NAG A:301
BINDING SITE FOR RESIDUE FUC A 306
07
AC7
SOFTWARE
ASN A:128 , TRP A:146 , NAG A:308 , FUC A:311
BINDING SITE FOR RESIDUE NAG A 307
08
AC8
SOFTWARE
NAG A:307 , BMA A:309 , FUC A:311
BINDING SITE FOR RESIDUE NAG A 308
09
AC9
SOFTWARE
NAG A:308 , MAN A:310
BINDING SITE FOR RESIDUE BMA A 309
10
BC1
SOFTWARE
BMA A:309
BINDING SITE FOR RESIDUE MAN A 310
11
BC2
SOFTWARE
NAG A:307 , NAG A:308
BINDING SITE FOR RESIDUE FUC A 311
12
BC3
SOFTWARE
HIS A:156 , GLU A:158 , GLU A:161 , ARG A:173 , ARG A:249
BINDING SITE FOR RESIDUE CD A 312
13
BC4
SOFTWARE
ASP A:223 , HIS A:252 , HOH A:418 , HOH A:419
BINDING SITE FOR RESIDUE CD A 313
14
BC5
SOFTWARE
HIS A:55 , ASP A:113
BINDING SITE FOR RESIDUE CD A 314
15
BC6
SOFTWARE
ASP A:110 , HIS A:251 , HOH A:433
BINDING SITE FOR RESIDUE CD A 315
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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PROSITE Patterns/Profiles
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Exons
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
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CATH Domains
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Pfam Domains
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Chain A
Asymmetric Unit 1
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select all 'ALA' residues (Alanines) in chain 'A'
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select residue range 5 to 10 in all chains
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select residue range 5 to 10 in chain 'A'
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Asym.Unit (86 KB)
Header - Asym.Unit
Biol.Unit 1 (157 KB)
Header - Biol.Unit 1
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