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4FMH
Asym. Unit
Info
Asym.Unit (1.8 MB)
Biol.Unit 1 (478 KB)
Biol.Unit 2 (477 KB)
Biol.Unit 3 (481 KB)
Biol.Unit 4 (475 KB)
Biol.Unit 5 (946 KB)
Biol.Unit 6 (938 KB)
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(1)
Title
:
MERKEL CELL POLYOMAVIRUS VP1 IN COMPLEX WITH DISIALYLLACTOSE
Authors
:
U. Neu, H. Hengel, T. Stehle
Date
:
17 Jun 12 (Deposition) - 05 Sep 12 (Release) - 05 Sep 12 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.85
Chains
:
Asym. Unit : A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T
Biol. Unit 1: A,B,C,D,E (1x)
Biol. Unit 2: F,G,H,I,J (1x)
Biol. Unit 3: K,L,M,N,O (1x)
Biol. Unit 4: P,Q,R,S,T (1x)
Biol. Unit 5: A,B,C,D,E,K,L,M,N,O (1x)
Biol. Unit 6: F,G,H,I,J,P,Q,R,S,T (1x)
Keywords
:
Viral Capsid Protein, Jelly Roll, Encapsidation, Receptor Binding, Sialylated Oligosaccharides, Viral Protein
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
U. Neu, H. Hengel, B. S. Blaum, R. M. Schowalter, D. Macejak, M. Gilbert W. W. Wakarchuk, A. Imamura, H. Ando, M. Kiso, N. Arnberg, R. L. Garcea, T. Peters, C. B. Buck, T. Stehle
Structures Of Merkel Cell Polyomavirus Vp1 Complexes Define A Sialic Acid Binding Site Required For Infection.
Plos Pathog. V. 8 02738 2012
[
close entry info
]
Hetero Components
(4, 90)
Info
All Hetero Components
1a: CHLORIDE ION (CLa)
1b: CHLORIDE ION (CLb)
1c: CHLORIDE ION (CLc)
1d: CHLORIDE ION (CLd)
1e: CHLORIDE ION (CLe)
1f: CHLORIDE ION (CLf)
1g: CHLORIDE ION (CLg)
1h: CHLORIDE ION (CLh)
1i: CHLORIDE ION (CLi)
1j: CHLORIDE ION (CLj)
1k: CHLORIDE ION (CLk)
1l: CHLORIDE ION (CLl)
1m: CHLORIDE ION (CLm)
1n: CHLORIDE ION (CLn)
1o: CHLORIDE ION (CLo)
1p: CHLORIDE ION (CLp)
1q: CHLORIDE ION (CLq)
1r: CHLORIDE ION (CLr)
1s: CHLORIDE ION (CLs)
1t: CHLORIDE ION (CLt)
2a: BETA-D-GALACTOSE (GALa)
2b: BETA-D-GALACTOSE (GALb)
2c: BETA-D-GALACTOSE (GALc)
2d: BETA-D-GALACTOSE (GALd)
2e: BETA-D-GALACTOSE (GALe)
2f: BETA-D-GALACTOSE (GALf)
2g: BETA-D-GALACTOSE (GALg)
3a: GLYCEROL (GOLa)
3aa: GLYCEROL (GOLaa)
3ab: GLYCEROL (GOLab)
3ac: GLYCEROL (GOLac)
3ad: GLYCEROL (GOLad)
3ae: GLYCEROL (GOLae)
3af: GLYCEROL (GOLaf)
3ag: GLYCEROL (GOLag)
3ah: GLYCEROL (GOLah)
3ai: GLYCEROL (GOLai)
3aj: GLYCEROL (GOLaj)
3ak: GLYCEROL (GOLak)
3al: GLYCEROL (GOLal)
3am: GLYCEROL (GOLam)
3an: GLYCEROL (GOLan)
3ao: GLYCEROL (GOLao)
3ap: GLYCEROL (GOLap)
3aq: GLYCEROL (GOLaq)
3ar: GLYCEROL (GOLar)
3as: GLYCEROL (GOLas)
3at: GLYCEROL (GOLat)
3au: GLYCEROL (GOLau)
3av: GLYCEROL (GOLav)
3aw: GLYCEROL (GOLaw)
3ax: GLYCEROL (GOLax)
3ay: GLYCEROL (GOLay)
3az: GLYCEROL (GOLaz)
3b: GLYCEROL (GOLb)
3ba: GLYCEROL (GOLba)
3bb: GLYCEROL (GOLbb)
3bc: GLYCEROL (GOLbc)
3bd: GLYCEROL (GOLbd)
3c: GLYCEROL (GOLc)
3d: GLYCEROL (GOLd)
3e: GLYCEROL (GOLe)
3f: GLYCEROL (GOLf)
3g: GLYCEROL (GOLg)
3h: GLYCEROL (GOLh)
3i: GLYCEROL (GOLi)
3j: GLYCEROL (GOLj)
3k: GLYCEROL (GOLk)
3l: GLYCEROL (GOLl)
3m: GLYCEROL (GOLm)
3n: GLYCEROL (GOLn)
3o: GLYCEROL (GOLo)
3p: GLYCEROL (GOLp)
3q: GLYCEROL (GOLq)
3r: GLYCEROL (GOLr)
3s: GLYCEROL (GOLs)
3t: GLYCEROL (GOLt)
3u: GLYCEROL (GOLu)
3v: GLYCEROL (GOLv)
3w: GLYCEROL (GOLw)
3x: GLYCEROL (GOLx)
3y: GLYCEROL (GOLy)
3z: GLYCEROL (GOLz)
4a: O-SIALIC ACID (SIAa)
4b: O-SIALIC ACID (SIAb)
4c: O-SIALIC ACID (SIAc)
4d: O-SIALIC ACID (SIAd)
4e: O-SIALIC ACID (SIAe)
4f: O-SIALIC ACID (SIAf)
4g: O-SIALIC ACID (SIAg)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
CL
20
Ligand/Ion
CHLORIDE ION
2
GAL
7
Ligand/Ion
BETA-D-GALACTOSE
3
GOL
56
Ligand/Ion
GLYCEROL
4
SIA
7
Ligand/Ion
O-SIALIC ACID
[
close Hetero Component info
]
Sites
(90, 90)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
19: CC1 (SOFTWARE)
20: CC2 (SOFTWARE)
21: CC3 (SOFTWARE)
22: CC4 (SOFTWARE)
23: CC5 (SOFTWARE)
24: CC6 (SOFTWARE)
25: CC7 (SOFTWARE)
26: CC8 (SOFTWARE)
27: CC9 (SOFTWARE)
28: DC1 (SOFTWARE)
29: DC2 (SOFTWARE)
30: DC3 (SOFTWARE)
31: DC4 (SOFTWARE)
32: DC5 (SOFTWARE)
33: DC6 (SOFTWARE)
34: DC7 (SOFTWARE)
35: DC8 (SOFTWARE)
36: DC9 (SOFTWARE)
37: EC1 (SOFTWARE)
38: EC2 (SOFTWARE)
39: EC3 (SOFTWARE)
40: EC4 (SOFTWARE)
41: EC5 (SOFTWARE)
42: EC6 (SOFTWARE)
43: EC7 (SOFTWARE)
44: EC8 (SOFTWARE)
45: EC9 (SOFTWARE)
46: FC1 (SOFTWARE)
47: FC2 (SOFTWARE)
48: FC3 (SOFTWARE)
49: FC4 (SOFTWARE)
50: FC5 (SOFTWARE)
51: FC6 (SOFTWARE)
52: FC7 (SOFTWARE)
53: FC8 (SOFTWARE)
54: FC9 (SOFTWARE)
55: GC1 (SOFTWARE)
56: GC2 (SOFTWARE)
57: GC3 (SOFTWARE)
58: GC4 (SOFTWARE)
59: GC5 (SOFTWARE)
60: GC6 (SOFTWARE)
61: GC7 (SOFTWARE)
62: GC8 (SOFTWARE)
63: GC9 (SOFTWARE)
64: HC1 (SOFTWARE)
65: HC2 (SOFTWARE)
66: HC3 (SOFTWARE)
67: HC4 (SOFTWARE)
68: HC5 (SOFTWARE)
69: HC6 (SOFTWARE)
70: HC7 (SOFTWARE)
71: HC8 (SOFTWARE)
72: HC9 (SOFTWARE)
73: IC1 (SOFTWARE)
74: IC2 (SOFTWARE)
75: IC3 (SOFTWARE)
76: IC4 (SOFTWARE)
77: IC5 (SOFTWARE)
78: IC6 (SOFTWARE)
79: IC7 (SOFTWARE)
80: IC8 (SOFTWARE)
81: IC9 (SOFTWARE)
82: JC1 (SOFTWARE)
83: JC2 (SOFTWARE)
84: JC3 (SOFTWARE)
85: JC4 (SOFTWARE)
86: JC5 (SOFTWARE)
87: JC6 (SOFTWARE)
88: JC7 (SOFTWARE)
89: JC8 (SOFTWARE)
90: JC9 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
ASN A:75 , TRP A:76 , TYR A:143 , TRP A:144 , HOH A:782 , ASP B:181 , GLN B:183 , HOH B:562 , HOH B:691
BINDING SITE FOR RESIDUE GOL A 501
02
AC2
SOFTWARE
ASN A:162 , HIS A:164 , GLN A:248 , PRO A:254 , THR A:255 , VAL A:256 , CL A:504 , HOH A:635 , HOH A:790 , HOH A:791
BINDING SITE FOR RESIDUE GOL A 502
03
AC3
SOFTWARE
LYS A:147 , ARG A:148 , HIS A:150 , ASP A:151 , HOH A:662
BINDING SITE FOR RESIDUE GOL A 503
04
AC4
SOFTWARE
HIS A:164 , SER A:246 , ILE A:247 , GLN A:248 , GOL A:502 , HOH A:606
BINDING SITE FOR RESIDUE CL A 504
05
AC5
SOFTWARE
TRP B:76 , TYR B:81 , ASP B:82 , LYS B:295 , SER B:297 , LYS B:299 , GAL B:402 , HOH B:608 , HOH B:624 , HOH B:704
BINDING SITE FOR RESIDUE SIA B 401
06
AC6
SOFTWARE
SIA B:401 , HOH B:572 , HOH B:692
BINDING SITE FOR RESIDUE GAL B 402
07
AC7
SOFTWARE
ASN B:162 , GLN B:248 , PRO B:254 , THR B:255 , VAL B:256 , CL B:405 , HOH B:681
BINDING SITE FOR RESIDUE GOL B 403
08
AC8
SOFTWARE
LYS B:147 , ARG B:148 , HIS B:150 , ASP B:151 , HOH B:560 , HOH B:731
BINDING SITE FOR RESIDUE GOL B 404
09
AC9
SOFTWARE
ASN B:162 , HIS B:164 , SER B:246 , ILE B:247 , GLN B:248 , GOL B:403 , HOH B:506
BINDING SITE FOR RESIDUE CL B 405
10
BC1
SOFTWARE
ASN C:162 , GLN C:248 , PRO C:254 , THR C:255 , VAL C:256 , CL C:403 , HOH C:609
BINDING SITE FOR RESIDUE GOL C 401
11
BC2
SOFTWARE
LYS C:147 , ARG C:148 , HIS C:150 , ASP C:151 , HOH C:534 , HOH C:564
BINDING SITE FOR RESIDUE GOL C 402
12
BC3
SOFTWARE
HIS C:164 , SER C:246 , ILE C:247 , GLN C:248 , GOL C:401 , HOH C:547
BINDING SITE FOR RESIDUE CL C 403
13
BC4
SOFTWARE
ASN D:75 , TRP D:76 , TYR D:143 , TRP D:144 , HOH D:725 , ASP E:181 , TYR E:182 , GLN E:183 , GLN E:210 , HOH E:630
BINDING SITE FOR RESIDUE GOL D 501
14
BC5
SOFTWARE
ASN D:162 , HIS D:164 , GLN D:248 , PRO D:254 , THR D:255 , VAL D:256 , CL D:504 , HOH D:709 , HOH D:807
BINDING SITE FOR RESIDUE GOL D 502
15
BC6
SOFTWARE
LYS D:147 , ARG D:148 , HIS D:150 , ASP D:151 , HOH D:642
BINDING SITE FOR RESIDUE GOL D 503
16
BC7
SOFTWARE
HIS D:164 , SER D:246 , ILE D:247 , GLN D:248 , GOL D:502 , HOH D:611
BINDING SITE FOR RESIDUE CL D 504
17
BC8
SOFTWARE
ASN E:162 , GLN E:248 , PRO E:254 , THR E:255 , VAL E:256 , CL E:404
BINDING SITE FOR RESIDUE GOL E 401
18
BC9
SOFTWARE
GLU E:239 , ASN E:240 , ARG E:242 , ASP E:269 , GLY E:274 , LEU E:276
BINDING SITE FOR RESIDUE GOL E 402
19
CC1
SOFTWARE
LYS E:147 , ARG E:148 , HIS E:150 , ASP E:151 , HOH E:637
BINDING SITE FOR RESIDUE GOL E 403
20
CC2
SOFTWARE
ASN E:162 , HIS E:164 , SER E:246 , ILE E:247 , GOL E:401
BINDING SITE FOR RESIDUE CL E 404
21
CC3
SOFTWARE
ASN F:162 , GLN F:248 , PRO F:254 , THR F:255 , VAL F:256 , CL F:403 , HOH F:611
BINDING SITE FOR RESIDUE GOL F 401
22
CC4
SOFTWARE
LYS F:147 , ARG F:148 , ASP F:151 , HOH F:513 , HOH F:530
BINDING SITE FOR RESIDUE GOL F 402
23
CC5
SOFTWARE
ASN F:162 , HIS F:164 , SER F:246 , ILE F:247 , GLN F:248 , GOL F:401 , HOH F:520
BINDING SITE FOR RESIDUE CL F 403
24
CC6
SOFTWARE
ASN G:162 , HIS G:164 , GLN G:248 , PRO G:254 , THR G:255 , VAL G:256 , CL G:403 , HOH G:696
BINDING SITE FOR RESIDUE GOL G 401
25
CC7
SOFTWARE
LYS G:147 , ARG G:148 , ASP G:151 , HOH G:673 , HOH G:714
BINDING SITE FOR RESIDUE GOL G 402
26
CC8
SOFTWARE
HIS G:164 , SER G:246 , ILE G:247 , GLN G:248 , GOL G:401 , HOH G:518
BINDING SITE FOR RESIDUE CL G 403
27
CC9
SOFTWARE
TRP H:76 , ASP H:82 , LYS H:295 , SER H:297 , LYS H:299 , GAL H:402 , HOH H:593 , HOH H:627 , HOH H:635
BINDING SITE FOR RESIDUE SIA H 401
28
DC1
SOFTWARE
SIA H:401 , HOH H:632 , HOH H:688
BINDING SITE FOR RESIDUE GAL H 402
29
DC2
SOFTWARE
ASN H:162 , GLN H:248 , PRO H:254 , THR H:255 , VAL H:256 , CL H:405 , HOH H:685
BINDING SITE FOR RESIDUE GOL H 403
30
DC3
SOFTWARE
LYS H:147 , ARG H:148 , ASP H:151 , HOH H:641 , HOH H:669
BINDING SITE FOR RESIDUE GOL H 404
31
DC4
SOFTWARE
HIS H:164 , SER H:246 , ILE H:247 , GOL H:403 , HOH H:503
BINDING SITE FOR RESIDUE CL H 405
32
DC5
SOFTWARE
ASN I:162 , HIS I:164 , GLN I:248 , PRO I:254 , THR I:255 , VAL I:256 , CL I:403
BINDING SITE FOR RESIDUE GOL I 401
33
DC6
SOFTWARE
LYS I:147 , ARG I:148 , HIS I:150 , ASP I:151 , HOH I:545 , HOH I:599 , HOH I:665
BINDING SITE FOR RESIDUE GOL I 402
34
DC7
SOFTWARE
HIS I:164 , SER I:246 , ILE I:247 , GLN I:248 , GOL I:401 , HOH I:533
BINDING SITE FOR RESIDUE CL I 403
35
DC8
SOFTWARE
ASN J:162 , HIS J:164 , GLN J:248 , PRO J:254 , THR J:255 , VAL J:256 , CL J:403 , HOH J:672 , HOH J:683
BINDING SITE FOR RESIDUE GOL J 401
36
DC9
SOFTWARE
LYS J:147 , ARG J:148 , HIS J:150 , ASP J:151 , HOH J:639
BINDING SITE FOR RESIDUE GOL J 402
37
EC1
SOFTWARE
HIS J:164 , SER J:246 , ILE J:247 , GOL J:401 , HOH J:534
BINDING SITE FOR RESIDUE CL J 403
38
EC2
SOFTWARE
TRP K:76 , ASP K:82 , LYS K:295 , SER K:297 , LYS K:299 , GAL K:402 , HOH K:557 , HOH K:562 , HOH K:622
BINDING SITE FOR RESIDUE SIA K 401
39
EC3
SOFTWARE
SIA K:401 , HOH K:607 , HOH K:699
BINDING SITE FOR RESIDUE GAL K 402
40
EC4
SOFTWARE
ASN K:162 , HIS K:164 , GLN K:248 , PRO K:254 , THR K:255 , VAL K:256 , CL K:405 , HOH K:639
BINDING SITE FOR RESIDUE GOL K 403
41
EC5
SOFTWARE
LYS K:147 , ARG K:148 , ASP K:151 , HOH K:539 , HOH K:645 , HOH K:691
BINDING SITE FOR RESIDUE GOL K 404
42
EC6
SOFTWARE
HIS K:164 , SER K:246 , ILE K:247 , GOL K:403 , HOH K:509
BINDING SITE FOR RESIDUE CL K 405
43
EC7
SOFTWARE
LYS K:217 , SER K:236 , HOH K:593 , THR M:116 , HOH M:742 , GLU O:56 , TYR O:58
BINDING SITE FOR RESIDUE GOL K 406
44
EC8
SOFTWARE
ASN L:75 , TRP L:76 , TYR L:143 , TRP L:144 , HOH L:814 , ASP M:181 , GLN M:183 , HOH M:584 , HOH M:660
BINDING SITE FOR RESIDUE GOL L 501
45
EC9
SOFTWARE
ASN L:162 , HIS L:164 , GLN L:248 , PRO L:254 , THR L:255 , VAL L:256 , CL L:505 , HOH L:803
BINDING SITE FOR RESIDUE GOL L 502
46
FC1
SOFTWARE
GLU L:239 , ASN L:240 , ARG L:242 , ASP L:269 , GLY L:274 , PRO L:275
BINDING SITE FOR RESIDUE GOL L 503
47
FC2
SOFTWARE
LYS L:147 , ARG L:148 , HIS L:150 , ASP L:151 , HOH L:621 , HOH L:783
BINDING SITE FOR RESIDUE GOL L 504
48
FC3
SOFTWARE
HIS L:164 , SER L:246 , ILE L:247 , GLN L:248 , GOL L:502 , HOH L:616
BINDING SITE FOR RESIDUE CL L 505
49
FC4
SOFTWARE
TRP M:76 , TYR M:81 , ASP M:82 , LYS M:295 , SER M:297 , LYS M:299 , GAL M:402 , HOH M:559 , HOH M:567 , HOH M:735
BINDING SITE FOR RESIDUE SIA M 401
50
FC5
SOFTWARE
SIA M:401 , HOH M:644 , HOH M:711
BINDING SITE FOR RESIDUE GAL M 402
51
FC6
SOFTWARE
ASN M:75 , TRP M:76 , TYR M:143 , TRP M:144 , HOH M:739 , ASP N:181 , TYR N:182 , GLN N:183 , GLN N:210 , HOH N:536
BINDING SITE FOR RESIDUE GOL M 403
52
FC7
SOFTWARE
ASN M:162 , GLN M:248 , PRO M:254 , THR M:255 , VAL M:256 , CL M:407
BINDING SITE FOR RESIDUE GOL M 404
53
FC8
SOFTWARE
GLU M:239 , ASN M:240 , ARG M:242 , ASP M:269 , GLY M:274 , PRO M:275
BINDING SITE FOR RESIDUE GOL M 405
54
FC9
SOFTWARE
LYS M:147 , ARG M:148 , HIS M:150 , ASP M:151 , HOH M:608 , HOH M:728
BINDING SITE FOR RESIDUE GOL M 406
55
GC1
SOFTWARE
HIS M:164 , SER M:246 , ILE M:247 , GLN M:248 , GOL M:404 , HOH M:511
BINDING SITE FOR RESIDUE CL M 407
56
GC2
SOFTWARE
ASN N:162 , HIS N:164 , GLN N:248 , PRO N:254 , THR N:255 , VAL N:256 , CL N:404 , HOH N:539
BINDING SITE FOR RESIDUE GOL N 401
57
GC3
SOFTWARE
LYS N:147 , ARG N:148 , HIS N:150 , ASP N:151 , HOH N:554
BINDING SITE FOR RESIDUE GOL N 402
58
GC4
SOFTWARE
TRP N:76 , TYR N:81 , ASP N:82 , LYS N:295 , HOH N:711 , HOH N:713
BINDING SITE FOR RESIDUE GOL N 403
59
GC5
SOFTWARE
HIS N:164 , SER N:246 , ILE N:247 , GOL N:401 , HOH N:528
BINDING SITE FOR RESIDUE CL N 404
60
GC6
SOFTWARE
TRP O:76 , ASP O:82 , LYS O:295 , SER O:297 , LYS O:299 , GAL O:402 , HOH O:617 , HOH O:624 , HOH O:625 , HOH O:629
BINDING SITE FOR RESIDUE SIA O 401
61
GC7
SOFTWARE
SIA O:401 , HOH O:697 , HOH O:703
BINDING SITE FOR RESIDUE GAL O 402
62
GC8
SOFTWARE
ASN O:162 , GLN O:248 , PRO O:254 , THR O:255 , VAL O:256 , CL O:405 , HOH O:512
BINDING SITE FOR RESIDUE GOL O 403
63
GC9
SOFTWARE
LYS O:147 , ARG O:148 , HIS O:150 , ASP O:151 , HOH O:539
BINDING SITE FOR RESIDUE GOL O 404
64
HC1
SOFTWARE
HIS O:164 , SER O:246 , ILE O:247 , GLN O:248 , GOL O:403 , HOH O:505
BINDING SITE FOR RESIDUE CL O 405
65
HC2
SOFTWARE
ASN P:162 , HIS P:164 , GLN P:248 , PRO P:254 , THR P:255 , VAL P:256 , CL P:404
BINDING SITE FOR RESIDUE GOL P 401
66
HC3
SOFTWARE
GLU P:239 , ASN P:240 , ARG P:242 , ASP P:269 , GLY P:274 , PRO P:275
BINDING SITE FOR RESIDUE GOL P 402
67
HC4
SOFTWARE
LYS P:147 , ARG P:148 , HIS P:150 , ASP P:151 , HOH P:619
BINDING SITE FOR RESIDUE GOL P 403
68
HC5
SOFTWARE
ASN P:162 , HIS P:164 , SER P:246 , ILE P:247 , GLN P:248 , GOL P:401 , HOH P:534
BINDING SITE FOR RESIDUE CL P 404
69
HC6
SOFTWARE
TRP Q:76 , ASP Q:82 , LYS Q:295 , SER Q:297 , LYS Q:299 , GAL Q:402 , HOH Q:563 , HOH Q:631 , HOH Q:705
BINDING SITE FOR RESIDUE SIA Q 401
70
HC7
SOFTWARE
SIA Q:401 , HOH Q:695 , HOH Q:696
BINDING SITE FOR RESIDUE GAL Q 402
71
HC8
SOFTWARE
ASN Q:162 , HIS Q:164 , GLN Q:248 , PRO Q:254 , THR Q:255 , VAL Q:256 , CL Q:406
BINDING SITE FOR RESIDUE GOL Q 403
72
HC9
SOFTWARE
GLU Q:239 , ASN Q:240 , ARG Q:242 , ASP Q:269 , GLY Q:274 , PRO Q:275 , HOH Q:688
BINDING SITE FOR RESIDUE GOL Q 404
73
IC1
SOFTWARE
LYS Q:147 , ARG Q:148 , HIS Q:150 , ASP Q:151 , HOH Q:537 , HOH Q:682
BINDING SITE FOR RESIDUE GOL Q 405
74
IC2
SOFTWARE
ASN Q:162 , HIS Q:164 , SER Q:246 , ILE Q:247 , GOL Q:403 , HOH Q:522
BINDING SITE FOR RESIDUE CL Q 406
75
IC3
SOFTWARE
ASN R:75 , TRP R:76 , TYR R:143 , TRP R:144 , HOH R:690 , ASP S:181 , GLN S:183 , HOH S:675 , HOH S:709
BINDING SITE FOR RESIDUE GOL R 501
76
IC4
SOFTWARE
ASN R:162 , GLN R:248 , PRO R:254 , VAL R:256 , CL R:505 , HOH R:821
BINDING SITE FOR RESIDUE GOL R 502
77
IC5
SOFTWARE
GLU R:239 , ASN R:240 , ARG R:242 , ASP R:269 , GLY R:274 , PRO R:275
BINDING SITE FOR RESIDUE GOL R 503
78
IC6
SOFTWARE
LYS R:147 , ARG R:148 , HIS R:150 , ASP R:151 , HOH R:824
BINDING SITE FOR RESIDUE GOL R 504
79
IC7
SOFTWARE
ASN R:162 , HIS R:164 , SER R:246 , ILE R:247 , GLN R:248 , GOL R:502 , HOH R:635
BINDING SITE FOR RESIDUE CL R 505
80
IC8
SOFTWARE
ASN S:75 , TRP S:76 , TYR S:143 , TRP S:144 , ASP T:181 , GLN T:210 , HOH T:536
BINDING SITE FOR RESIDUE GOL S 501
81
IC9
SOFTWARE
ASN S:162 , GLN S:248 , PRO S:254 , VAL S:256 , CL S:506 , HOH S:679 , HOH S:771
BINDING SITE FOR RESIDUE GOL S 502
82
JC1
SOFTWARE
GLU S:239 , ASN S:240 , ARG S:242 , ASP S:269 , GLY S:274 , PRO S:275 , HOH S:782
BINDING SITE FOR RESIDUE GOL S 503
83
JC2
SOFTWARE
LYS S:147 , ARG S:148 , HIS S:150 , ASP S:151 , HOH S:616
BINDING SITE FOR RESIDUE GOL S 504
84
JC3
SOFTWARE
TYR D:81 , ASP D:82 , LYS S:86 , GLY S:87 , SER S:88 , HOH S:718
BINDING SITE FOR RESIDUE GOL S 505
85
JC4
SOFTWARE
HIS S:164 , SER S:246 , ILE S:247 , GLN S:248 , GOL S:502 , HOH S:623
BINDING SITE FOR RESIDUE CL S 506
86
JC5
SOFTWARE
TRP T:76 , ASP T:82 , LYS T:295 , SER T:297 , LYS T:299 , GAL T:402 , HOH T:611 , HOH T:622 , HOH T:631 , HOH T:648
BINDING SITE FOR RESIDUE SIA T 401
87
JC6
SOFTWARE
SIA T:401 , HOH T:636 , HOH T:648 , HOH T:650 , HOH T:687
BINDING SITE FOR RESIDUE GAL T 402
88
JC7
SOFTWARE
ASN T:162 , HIS T:164 , GLN T:248 , PRO T:254 , THR T:255 , VAL T:256 , CL T:405 , HOH T:662
BINDING SITE FOR RESIDUE GOL T 403
89
JC8
SOFTWARE
LYS T:147 , ARG T:148 , HIS T:150 , ASP T:151 , HOH T:555 , HOH T:685 , HOH T:690
BINDING SITE FOR RESIDUE GOL T 404
90
JC9
SOFTWARE
HIS T:164 , SER T:246 , ILE T:247 , GOL T:403 , HOH T:507
BINDING SITE FOR RESIDUE CL T 405
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SAPs(SNPs)/Variants
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SCOP Domains
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1a: SCOP_d4fmha_ (A:)
1b: SCOP_d4fmhb_ (B:)
1c: SCOP_d4fmhc_ (C:)
1d: SCOP_d4fmhd_ (D:)
1e: SCOP_d4fmhe_ (E:)
1f: SCOP_d4fmhf_ (F:)
1g: SCOP_d4fmhg_ (G:)
1h: SCOP_d4fmhh_ (H:)
1i: SCOP_d4fmhi_ (I:)
1j: SCOP_d4fmhj_ (J:)
1k: SCOP_d4fmhk_ (K:)
1l: SCOP_d4fmhl_ (L:)
1m: SCOP_d4fmhm_ (M:)
1n: SCOP_d4fmhn_ (N:)
1o: SCOP_d4fmho_ (O:)
1p: SCOP_d4fmhp_ (P:)
1q: SCOP_d4fmhq_ (Q:)
1r: SCOP_d4fmhr_ (R:)
1s: SCOP_d4fmhs_ (S:)
1t: SCOP_d4fmht_ (T:)
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Organisms
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Class
:
All beta proteins
(24004)
Fold
:
Nucleoplasmin-like/VP (viral coat and capsid proteins)
(278)
Superfamily
:
Group I dsDNA viruses
(30)
Family
:
Papovaviridae-like VP
(19)
Protein domain
:
automated matches
(12)
Merkel cell polyomavirus [TaxId: 493803]
(4)
1a
d4fmha_
A:
1b
d4fmhb_
B:
1c
d4fmhc_
C:
1d
d4fmhd_
D:
1e
d4fmhe_
E:
1f
d4fmhf_
F:
1g
d4fmhg_
G:
1h
d4fmhh_
H:
1i
d4fmhi_
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d4fmhj_
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d4fmhk_
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d4fmhl_
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d4fmhm_
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d4fmhn_
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d4fmho_
O:
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d4fmhp_
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1q
d4fmhq_
Q:
1r
d4fmhr_
R:
1s
d4fmhs_
S:
1t
d4fmht_
T:
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select residue range 5 to 10 in all chains
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select residue range 5 to 10 in chain 'A'
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select non-helix/non-sheet protein parts
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