PLEASE WAIT...
Getting 'Biological Unit' information from database.
PLEASE WAIT...
Getting 'Hetero Component' information from database.
PLEASE WAIT...
Getting 'Site' information from database.
PLEASE WAIT...
No precomputed SNP/Variant structure found.
Calculating the structure may take several minutes.
PLEASE WAIT...
Getting 'PROSITE' information from database.
PLEASE WAIT...
Getting 'Exon' information from database.
4FLQ
Asym. Unit
Info
Asym.Unit (114 KB)
Biol.Unit 1 (109 KB)
(using Jmol or JSmol)
spin
show selected part
auto zoom/center
Standard Views
(
Basic
|
Advanced
Interface
)
(
Basic
|
Advanced
Interface
)
Help
(1)
Title
:
CRYSTAL STRUCTURE OF AMYLOSUCRASE DOUBLE MUTANT A289P-F290I FROM NEISSERIA POLYSACCHAREA.
Authors
:
F. Guerin, E. Champion, C. Moulis, S. Barbe, T. H. Tran, S. Morel, K. Desc P. Monsan, L. A. Mulard, M. Remaud-Simeon, I. Andre, L. Mourey, S. Tran
Date
:
15 Jun 12 (Deposition) - 31 Oct 12 (Release) - 02 Jan 13 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.50
Chains
:
Asym. Unit : A
Biol. Unit 1: A (1x)
Keywords
:
Beta/Alpha-Barrel, Glycoside Hydrolase, Amylose Synthesis, Sucrose Isomerization, Glucosyltransferase, Carbohydrate, Transferase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
E. Champion, F. Guerin, C. Moulis, S. Barbe, T. H. Tran, S. Morel, K. Descroix, P. Monsan, L. Mourey, L. A. Mulard, S. Tranier, M. Remaud-Simeon, I. Andre
Applying Pairwise Combinations Of Amino Acid Mutations For Sorting Out Highly Efficient Glucosylation Tools For Chemo-Enzymatic Synthesis Of Bacterial Oligosaccharides.
J. Am. Chem. Soc. V. 134 18677 2012
[
close entry info
]
Hetero Components
(4, 10)
Info
All Hetero Components
1a: GLYCEROL (GOLa)
1b: GLYCEROL (GOLb)
1c: GLYCEROL (GOLc)
1d: GLYCEROL (GOLd)
1e: GLYCEROL (GOLe)
1f: GLYCEROL (GOLf)
1g: GLYCEROL (GOLg)
2a: TETRAETHYLENE GLYCOL (PG4a)
3a: TRIETHYLENE GLYCOL (PGEa)
4a: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,... (TRSa)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
GOL
7
Ligand/Ion
GLYCEROL
2
PG4
1
Ligand/Ion
TETRAETHYLENE GLYCOL
3
PGE
1
Ligand/Ion
TRIETHYLENE GLYCOL
4
TRS
1
Ligand/Ion
2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL
[
close Hetero Component info
]
Sites
(10, 10)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
ASP A:144 , TYR A:147 , HIS A:187 , ASP A:286 , GLU A:328 , ARG A:509 , HOH A:926 , HOH A:968 , HOH A:1011
BINDING SITE FOR RESIDUE TRS A 701
02
AC2
SOFTWARE
ARG A:284 , GLU A:328 , ILE A:330 , TYR A:349 , SER A:391 , HIS A:392 , ASP A:393
BINDING SITE FOR RESIDUE GOL A 702
03
AC3
SOFTWARE
GLU A:55 , VAL A:366 , HIS A:370 , PHE A:559 , ASN A:560 , THR A:561 , ASN A:563 , LYS A:564 , ILE A:566
BINDING SITE FOR RESIDUE GOL A 703
04
AC4
SOFTWARE
TYR A:375 , ASP A:403 , HOH A:814
BINDING SITE FOR RESIDUE GOL A 704
05
AC5
SOFTWARE
TYR A:51 , SER A:260 , ASN A:562 , THR A:589 , HIS A:591 , THR A:592 , HOH A:921
BINDING SITE FOR RESIDUE GOL A 705
06
AC6
SOFTWARE
CYS A:445
BINDING SITE FOR RESIDUE GOL A 706
07
AC7
SOFTWARE
ASP A:91 , LEU A:94 , ASP A:552
BINDING SITE FOR RESIDUE GOL A 707
08
AC8
SOFTWARE
HIS A:332 , PHE A:399 , ASP A:401 , GLU A:402 , ARG A:415
BINDING SITE FOR RESIDUE GOL A 708
09
AC9
SOFTWARE
ASN A:54 , ASN A:207 , SER A:260 , ASN A:261 , ASN A:560 , ASN A:562
BINDING SITE FOR RESIDUE PGE A 709
10
BC1
SOFTWARE
LEU A:204 , PHE A:205 , PHE A:208 , TRP A:263 , ARG A:266 , HOH A:873
BINDING SITE FOR RESIDUE PG4 A 710
[
close Site info
]
SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
View:
Select:
Label:
Sorry, no Info available
[
close SNP/Variant info
]
PROSITE Patterns/Profiles
(0, 0)
Info
All PROSITE Patterns/Profiles
;
View:
Select:
Label:
End label:
Sorry, no Info available
[
close PROSITE info
]
Exons
(0, 0)
Info
All Exons
View:
Select:
Label:
All Exon Boundaries
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(2, 2)
Info
All SCOP Domains
1a: SCOP_d4flqa2 (A:555-628)
2a: SCOP_d4flqa1 (A:1-554)
View:
Select:
Label:
Classes
(
)
(
)
Folds
(
)
(
)
Superfamilies
(
)
(
)
Families
(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All beta proteins
(24004)
Fold
:
Glycosyl hydrolase domain
(397)
Superfamily
:
Glycosyl hydrolase domain
(397)
Family
:
automated matches
(85)
Protein domain
:
automated matches
(85)
Neisseria polysaccharea [TaxId: 489]
(5)
1a
d4flqa2
A:555-628
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
TIM beta/alpha-barrel
(3956)
Superfamily
:
(Trans)glycosidases
(1191)
Family
:
Amylase, catalytic domain
(385)
Protein domain
:
automated matches
(71)
Neisseria polysaccharea [TaxId: 489]
(5)
2a
d4flqa1
A:1-554
[
close SCOP info
]
CATH Domains
(0, 0)
Info
all CATH domains
View:
Select:
Label:
Sorry, no Info available
[
close CATH info
]
Pfam Domains
(0, 0)
Info
all PFAM domains
View:
Select:
Label:
Sorry, no Info available
[
close Pfam info
]
Atom Selection
(currently selected atoms:
all
)
Protein
Nucleic
Backbone
Sidechain
Hetero
Ligand
Solvent
All Atoms
Protein & NOT Variant
Protein & NOT Site
Protein & NOT PROSITE
Chain A
Asymmetric Unit 1
Rendering
(selected part)
Molecule Coloring
(selected part)
by Chain (Asym. Unit)
by Chain (Biol. Unit)
by Secondary Structure
by Atom (CPK)
by SCOP Domain
by CATH Domain
by Pfam Domain
by Asymmetric Unit
by Exon
by Amino Acid
by Nucleotide
by Temperature
by Charge
by Rainbow (Group)
by Custom Color
Background Coloring
Choose
molecule
background
color...
[
close
]
RGB value
(e.g.: "#3cb371" or "60,179,113")
Stereo
Graphics Window
x
pixel
Miscellaneous
Script
Example Commands
Example Command
Action
select :A, :C
select chains 'A' and 'C'
select [ALA]:A
select all 'ALA' residues (Alanines) in chain 'A'
select 5-10
select residue range 5 to 10 in all chains
select 5-10:A
select residue range 5 to 10 in chain 'A'
select protein & not helix & not sheet
select non-helix/non-sheet protein parts
set fontsize 20
set label size to 20 (allowed range: 1-58)
ssbonds 100
show SS bonds with a radius of 100 units (=0.4Å)
wireframe 100
show bonds with a radius of 100 units (=0.4Å)
[
close Script example commands
]
Log
Note:
In this "Basic Interface" any change in the selection of a pulldown menu automatically triggers an action (one-step mechanism).
View and selection are coupled in the structure specific controls (e.g. "Hetero","PROSITE") .
Note:
In this "Advanced Interface" any change in the selection of a pulldown menu only sets the target for the corresponding control buttons (two-step mechanism).
View and selection are set independently in the structure specific controls (e.g. "Hetero","PROSITE") .
QuickSearch:
by PDB,NDB,UniProt,PROSITE Code or
Search Term(s)
Show PDB file:
Asym.Unit (114 KB)
Header - Asym.Unit
Biol.Unit 1 (109 KB)
Header - Biol.Unit 1
Plain Text
HTML (compressed size)
use JSmol [Javascript]
use Jmol [Java applet]
Upload:
Select a local file
OR
Enter a remote file address
You can upload any molecular structure file format that is recognized by Jmol,
e.g.: PDB, mmCif, CIF, CML, MOL, XYZ
(also compressed with 'gzip', see the
Jmol documentation
for a complete list)
JenaLib Atlas Page
|
Sequence/Alignment View
4FLQ
Jmol Script Commands
|
Jmol Color Schemes
|
Jmol Mouse Manual
|
Jmol Wiki
controls:
collapse
expand
Home
JenaLib
Jmol Scripting
Contact
Help