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4FL4
Biol. Unit 3
Info
Asym.Unit (347 KB)
Biol.Unit 1 (89 KB)
Biol.Unit 2 (90 KB)
Biol.Unit 3 (90 KB)
Biol.Unit 4 (88 KB)
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(1)
Title
:
SCAFFOLDIN CONFORMATION AND DYNAMICS REVEALED BY A TERNARY COMPLEX FROM THE CLOSTRIDIUM THERMOCELLUM CELLULOSOME
Authors
:
M. A. Currie, J. J. Adams, F. Faucher, E. A. Bayer, Z. Jia, S. P. Smith, Mon Kingston Bacterial Structural Genomics Initiative (Bsgi)
Date
:
14 Jun 12 (Deposition) - 27 Jun 12 (Release) - 22 Aug 12 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.80
Chains
:
Asym. Unit : A,B,C,D,E,F,G,H,I,J,K,L
Biol. Unit 1: A,B,C (1x)
Biol. Unit 2: D,E,F (1x)
Biol. Unit 3: G,H,I (1x)
Biol. Unit 4: J,K,L (1x)
Keywords
:
Structural Genomics, Montreal-Kingston Bacterial Structural Genomics Initiative, Bsgi, Cohesin, Dockerin, X Module, Cell Surface, Hydrolase, Protein Binding
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
M. A. Currie, J. J. Adams, F. Faucher, E. A. Bayer, Z. Jia, S. P. Smith
Scaffoldin Conformation And Dynamics Revealed By A Ternary Complex From The Clostridium Thermocellum Cellulosome.
J. Biol. Chem. V. 287 26953 2012
[
close entry info
]
Hetero Components
(1, 13)
Info
All Hetero Components
1a: CALCIUM ION (CAa)
1b: CALCIUM ION (CAb)
1c: CALCIUM ION (CAc)
1d: CALCIUM ION (CAd)
1e: CALCIUM ION (CAe)
1f: CALCIUM ION (CAf)
1g: CALCIUM ION (CAg)
1h: CALCIUM ION (CAh)
1i: CALCIUM ION (CAi)
1j: CALCIUM ION (CAj)
1k: CALCIUM ION (CAk)
1l: CALCIUM ION (CAl)
1m: CALCIUM ION (CAm)
1n: CALCIUM ION (CAn)
1o: CALCIUM ION (CAo)
1p: CALCIUM ION (CAp)
2a: SULFATE ION (SO4a)
2aa: SULFATE ION (SO4aa)
2ab: SULFATE ION (SO4ab)
2ac: SULFATE ION (SO4ac)
2ad: SULFATE ION (SO4ad)
2ae: SULFATE ION (SO4ae)
2af: SULFATE ION (SO4af)
2ag: SULFATE ION (SO4ag)
2ah: SULFATE ION (SO4ah)
2ai: SULFATE ION (SO4ai)
2aj: SULFATE ION (SO4aj)
2ak: SULFATE ION (SO4ak)
2al: SULFATE ION (SO4al)
2am: SULFATE ION (SO4am)
2an: SULFATE ION (SO4an)
2ao: SULFATE ION (SO4ao)
2ap: SULFATE ION (SO4ap)
2aq: SULFATE ION (SO4aq)
2ar: SULFATE ION (SO4ar)
2as: SULFATE ION (SO4as)
2at: SULFATE ION (SO4at)
2au: SULFATE ION (SO4au)
2av: SULFATE ION (SO4av)
2aw: SULFATE ION (SO4aw)
2ax: SULFATE ION (SO4ax)
2ay: SULFATE ION (SO4ay)
2az: SULFATE ION (SO4az)
2b: SULFATE ION (SO4b)
2ba: SULFATE ION (SO4ba)
2bb: SULFATE ION (SO4bb)
2bc: SULFATE ION (SO4bc)
2bd: SULFATE ION (SO4bd)
2be: SULFATE ION (SO4be)
2bf: SULFATE ION (SO4bf)
2c: SULFATE ION (SO4c)
2d: SULFATE ION (SO4d)
2e: SULFATE ION (SO4e)
2f: SULFATE ION (SO4f)
2g: SULFATE ION (SO4g)
2h: SULFATE ION (SO4h)
2i: SULFATE ION (SO4i)
2j: SULFATE ION (SO4j)
2k: SULFATE ION (SO4k)
2l: SULFATE ION (SO4l)
2m: SULFATE ION (SO4m)
2n: SULFATE ION (SO4n)
2o: SULFATE ION (SO4o)
2p: SULFATE ION (SO4p)
2q: SULFATE ION (SO4q)
2r: SULFATE ION (SO4r)
2s: SULFATE ION (SO4s)
2t: SULFATE ION (SO4t)
2u: SULFATE ION (SO4u)
2v: SULFATE ION (SO4v)
2w: SULFATE ION (SO4w)
2x: SULFATE ION (SO4x)
2y: SULFATE ION (SO4y)
2z: SULFATE ION (SO4z)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
CA
-1
Ligand/Ion
CALCIUM ION
2
SO4
13
Ligand/Ion
SULFATE ION
[
close Hetero Component info
]
Sites
(17, 17)
Info
All Sites
01: EC4 (SOFTWARE)
02: EC5 (SOFTWARE)
03: EC6 (SOFTWARE)
04: EC7 (SOFTWARE)
05: EC8 (SOFTWARE)
06: EC9 (SOFTWARE)
07: FC1 (SOFTWARE)
08: FC2 (SOFTWARE)
09: FC3 (SOFTWARE)
10: FC4 (SOFTWARE)
11: FC5 (SOFTWARE)
12: FC6 (SOFTWARE)
13: FC7 (SOFTWARE)
14: FC8 (SOFTWARE)
15: FC9 (SOFTWARE)
16: GC1 (SOFTWARE)
17: GC2 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
EC4
SOFTWARE
ASP G:24 , ASN G:26 , ASP G:28 , LYS G:30 , ASP G:35
BINDING SITE FOR RESIDUE CA G 101
02
EC5
SOFTWARE
ASP G:60 , ASN G:62 , ASP G:64 , ARG G:66 , ASN G:68 , ASP G:71
BINDING SITE FOR RESIDUE CA G 102
03
EC6
SOFTWARE
THR H:39 , ARG H:41
BINDING SITE FOR RESIDUE SO4 H 201
04
EC7
SOFTWARE
ARG H:41 , THR H:83 , ILE H:128
BINDING SITE FOR RESIDUE SO4 H 202
05
EC8
SOFTWARE
ALA H:123 , GLU H:125 , SER H:126
BINDING SITE FOR RESIDUE SO4 H 203
06
EC9
SOFTWARE
ASN H:47
BINDING SITE FOR RESIDUE SO4 H 204
07
FC1
SOFTWARE
LYS H:140 , SER H:141 , LEU H:182
BINDING SITE FOR RESIDUE SO4 H 205
08
FC2
SOFTWARE
SER H:75
BINDING SITE FOR RESIDUE SO4 H 206
09
FC3
SOFTWARE
LYS H:24 , PHE H:25 , PRO H:177 , ASP H:178
BINDING SITE FOR RESIDUE SO4 H 207
10
FC4
SOFTWARE
ASP I:284 , ASN I:286 , ASN I:288 , ALA I:290 , ASP I:295
BINDING SITE FOR RESIDUE CA I 401
11
FC5
SOFTWARE
ASP I:251 , VAL I:253 , ASP I:255 , SER I:257 , ASP I:262
BINDING SITE FOR RESIDUE CA I 402
12
FC6
SOFTWARE
ARG I:225 , MET I:246
BINDING SITE FOR RESIDUE SO4 I 403
13
FC7
SOFTWARE
LYS H:86 , ASN I:67
BINDING SITE FOR RESIDUE SO4 I 404
14
FC8
SOFTWARE
ARG I:219
BINDING SITE FOR RESIDUE SO4 I 405
15
FC9
SOFTWARE
LYS I:12 , ARG I:15
BINDING SITE FOR RESIDUE SO4 I 406
16
GC1
SOFTWARE
ASN I:67 , PRO I:68 , THR I:69
BINDING SITE FOR RESIDUE SO4 I 407
17
GC2
SOFTWARE
ASN I:7 , GLN I:35
BINDING SITE FOR RESIDUE SO4 I 408
[
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]
SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
View:
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Sorry, no Info available
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PROSITE Patterns/Profiles
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Info
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;
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End label:
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Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(2, 8)
Info
All SCOP Domains
1a: SCOP_d4fl4a_ (A:)
1b: SCOP_d4fl4d_ (D:)
1c: SCOP_d4fl4g_ (G:)
1d: SCOP_d4fl4j_ (J:)
2a: SCOP_d4fl4b_ (B:)
2b: SCOP_d4fl4e_ (E:)
2c: SCOP_d4fl4h_ (H:)
2d: SCOP_d4fl4k_ (K:)
View:
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Label:
Classes
(
)
(
)
Folds
(
)
(
)
Superfamilies
(
)
(
)
Families
(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All alpha proteins
(14657)
Fold
:
Type I dockerin domain
(11)
Superfamily
:
Type I dockerin domain
(11)
Family
:
automated matches
(5)
Protein domain
:
automated matches
(5)
Clostridium thermocellum [TaxId: 1515]
(1)
1a
d4fl4a_
A:
1b
d4fl4d_
D:
1c
d4fl4g_
G:
1d
d4fl4j_
J:
Class
:
All beta proteins
(24004)
Fold
:
Common fold of diphtheria toxin/transcription factors/cytochrome f
(364)
Superfamily
:
Carbohydrate-binding domain
(66)
Family
:
Cellulose-binding domain family III
(37)
Protein domain
:
Scaffolding dockerin binding protein A, SdbA
(3)
Clostridium thermocellum [TaxId: 1515]
(3)
2a
d4fl4b_
B:
2b
d4fl4e_
E:
2c
d4fl4h_
H:
2d
d4fl4k_
K:
[
close SCOP info
]
CATH Domains
(0, 0)
Info
all CATH domains
View:
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Label:
Sorry, no Info available
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Pfam Domains
(0, 0)
Info
all PFAM domains
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Label:
Sorry, no Info available
[
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Asymmetric Unit 1
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Asym.Unit (347 KB)
Header - Asym.Unit
Biol.Unit 1 (89 KB)
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Biol.Unit 3 (90 KB)
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Biol.Unit 4 (88 KB)
Header - Biol.Unit 4
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