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4FL4
Biol. Unit 1
Info
Asym.Unit (347 KB)
Biol.Unit 1 (89 KB)
Biol.Unit 2 (90 KB)
Biol.Unit 3 (90 KB)
Biol.Unit 4 (88 KB)
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(1)
Title
:
SCAFFOLDIN CONFORMATION AND DYNAMICS REVEALED BY A TERNARY COMPLEX FROM THE CLOSTRIDIUM THERMOCELLUM CELLULOSOME
Authors
:
M. A. Currie, J. J. Adams, F. Faucher, E. A. Bayer, Z. Jia, S. P. Smith, Mon Kingston Bacterial Structural Genomics Initiative (Bsgi)
Date
:
14 Jun 12 (Deposition) - 27 Jun 12 (Release) - 22 Aug 12 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.80
Chains
:
Asym. Unit : A,B,C,D,E,F,G,H,I,J,K,L
Biol. Unit 1: A,B,C (1x)
Biol. Unit 2: D,E,F (1x)
Biol. Unit 3: G,H,I (1x)
Biol. Unit 4: J,K,L (1x)
Keywords
:
Structural Genomics, Montreal-Kingston Bacterial Structural Genomics Initiative, Bsgi, Cohesin, Dockerin, X Module, Cell Surface, Hydrolase, Protein Binding
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
M. A. Currie, J. J. Adams, F. Faucher, E. A. Bayer, Z. Jia, S. P. Smith
Scaffoldin Conformation And Dynamics Revealed By A Ternary Complex From The Clostridium Thermocellum Cellulosome.
J. Biol. Chem. V. 287 26953 2012
[
close entry info
]
Hetero Components
(1, 13)
Info
All Hetero Components
1a: CALCIUM ION (CAa)
1b: CALCIUM ION (CAb)
1c: CALCIUM ION (CAc)
1d: CALCIUM ION (CAd)
1e: CALCIUM ION (CAe)
1f: CALCIUM ION (CAf)
1g: CALCIUM ION (CAg)
1h: CALCIUM ION (CAh)
1i: CALCIUM ION (CAi)
1j: CALCIUM ION (CAj)
1k: CALCIUM ION (CAk)
1l: CALCIUM ION (CAl)
1m: CALCIUM ION (CAm)
1n: CALCIUM ION (CAn)
1o: CALCIUM ION (CAo)
1p: CALCIUM ION (CAp)
2a: SULFATE ION (SO4a)
2aa: SULFATE ION (SO4aa)
2ab: SULFATE ION (SO4ab)
2ac: SULFATE ION (SO4ac)
2ad: SULFATE ION (SO4ad)
2ae: SULFATE ION (SO4ae)
2af: SULFATE ION (SO4af)
2ag: SULFATE ION (SO4ag)
2ah: SULFATE ION (SO4ah)
2ai: SULFATE ION (SO4ai)
2aj: SULFATE ION (SO4aj)
2ak: SULFATE ION (SO4ak)
2al: SULFATE ION (SO4al)
2am: SULFATE ION (SO4am)
2an: SULFATE ION (SO4an)
2ao: SULFATE ION (SO4ao)
2ap: SULFATE ION (SO4ap)
2aq: SULFATE ION (SO4aq)
2ar: SULFATE ION (SO4ar)
2as: SULFATE ION (SO4as)
2at: SULFATE ION (SO4at)
2au: SULFATE ION (SO4au)
2av: SULFATE ION (SO4av)
2aw: SULFATE ION (SO4aw)
2ax: SULFATE ION (SO4ax)
2ay: SULFATE ION (SO4ay)
2az: SULFATE ION (SO4az)
2b: SULFATE ION (SO4b)
2ba: SULFATE ION (SO4ba)
2bb: SULFATE ION (SO4bb)
2bc: SULFATE ION (SO4bc)
2bd: SULFATE ION (SO4bd)
2be: SULFATE ION (SO4be)
2bf: SULFATE ION (SO4bf)
2c: SULFATE ION (SO4c)
2d: SULFATE ION (SO4d)
2e: SULFATE ION (SO4e)
2f: SULFATE ION (SO4f)
2g: SULFATE ION (SO4g)
2h: SULFATE ION (SO4h)
2i: SULFATE ION (SO4i)
2j: SULFATE ION (SO4j)
2k: SULFATE ION (SO4k)
2l: SULFATE ION (SO4l)
2m: SULFATE ION (SO4m)
2n: SULFATE ION (SO4n)
2o: SULFATE ION (SO4o)
2p: SULFATE ION (SO4p)
2q: SULFATE ION (SO4q)
2r: SULFATE ION (SO4r)
2s: SULFATE ION (SO4s)
2t: SULFATE ION (SO4t)
2u: SULFATE ION (SO4u)
2v: SULFATE ION (SO4v)
2w: SULFATE ION (SO4w)
2x: SULFATE ION (SO4x)
2y: SULFATE ION (SO4y)
2z: SULFATE ION (SO4z)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
CA
-1
Ligand/Ion
CALCIUM ION
2
SO4
13
Ligand/Ion
SULFATE ION
[
close Hetero Component info
]
Sites
(17, 17)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
ASP A:24 , ASN A:26 , ASP A:28 , LYS A:30 , ASN A:32 , ASP A:35
BINDING SITE FOR RESIDUE CA A 101
02
AC2
SOFTWARE
ASP A:60 , ASN A:62 , ASP A:64 , ARG A:66 , ASP A:71
BINDING SITE FOR RESIDUE CA A 102
03
AC3
SOFTWARE
ALA B:123 , GLU B:125 , SER B:126
BINDING SITE FOR RESIDUE SO4 B 201
04
AC4
SOFTWARE
ARG B:41 , THR B:83 , GLY B:127
BINDING SITE FOR RESIDUE SO4 B 202
05
AC5
SOFTWARE
LYS B:24 , PHE B:25 , ASP B:178
BINDING SITE FOR RESIDUE SO4 B 203
06
AC6
SOFTWARE
LYS B:86 , ASN B:87 , LYS C:70
BINDING SITE FOR RESIDUE SO4 B 204
07
AC7
SOFTWARE
THR B:39 , ARG B:41
BINDING SITE FOR RESIDUE SO4 B 205
08
AC8
SOFTWARE
SER B:141 , LEU B:182
BINDING SITE FOR RESIDUE SO4 B 206
09
AC9
SOFTWARE
ASP C:251 , VAL C:253 , ASP C:255 , SER C:257 , ASP C:262
BINDING SITE FOR RESIDUE CA C 401
10
BC1
SOFTWARE
ASP C:284 , ASN C:286 , ASN C:288 , ALA C:290 , ASP C:295
BINDING SITE FOR RESIDUE CA C 402
11
BC2
SOFTWARE
ARG C:225 , PRO C:244 , MET C:246 , ASP C:311
BINDING SITE FOR RESIDUE SO4 C 403
12
BC3
SOFTWARE
ARG C:219 , ARG C:287
BINDING SITE FOR RESIDUE SO4 C 404
13
BC4
SOFTWARE
LYS C:12 , ARG C:15
BINDING SITE FOR RESIDUE SO4 C 405
14
BC5
SOFTWARE
LYS B:86 , ASN C:67
BINDING SITE FOR RESIDUE SO4 C 406
15
BC6
SOFTWARE
ASN C:67 , PRO C:68 , THR C:69
BINDING SITE FOR RESIDUE SO4 C 407
16
BC7
SOFTWARE
PRO C:34 , GLN C:35
BINDING SITE FOR RESIDUE SO4 C 408
17
BC8
SOFTWARE
LYS C:112 , GLU C:113 , GLY C:114
BINDING SITE FOR RESIDUE SO4 C 409
[
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]
SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
View:
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PROSITE Patterns/Profiles
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Info
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;
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End label:
Sorry, no Info available
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Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(2, 8)
Info
All SCOP Domains
1a: SCOP_d4fl4a_ (A:)
1b: SCOP_d4fl4d_ (D:)
1c: SCOP_d4fl4g_ (G:)
1d: SCOP_d4fl4j_ (J:)
2a: SCOP_d4fl4b_ (B:)
2b: SCOP_d4fl4e_ (E:)
2c: SCOP_d4fl4h_ (H:)
2d: SCOP_d4fl4k_ (K:)
View:
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Label:
Classes
(
)
(
)
Folds
(
)
(
)
Superfamilies
(
)
(
)
Families
(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All alpha proteins
(14657)
Fold
:
Type I dockerin domain
(11)
Superfamily
:
Type I dockerin domain
(11)
Family
:
automated matches
(5)
Protein domain
:
automated matches
(5)
Clostridium thermocellum [TaxId: 1515]
(1)
1a
d4fl4a_
A:
1b
d4fl4d_
D:
1c
d4fl4g_
G:
1d
d4fl4j_
J:
Class
:
All beta proteins
(24004)
Fold
:
Common fold of diphtheria toxin/transcription factors/cytochrome f
(364)
Superfamily
:
Carbohydrate-binding domain
(66)
Family
:
Cellulose-binding domain family III
(37)
Protein domain
:
Scaffolding dockerin binding protein A, SdbA
(3)
Clostridium thermocellum [TaxId: 1515]
(3)
2a
d4fl4b_
B:
2b
d4fl4e_
E:
2c
d4fl4h_
H:
2d
d4fl4k_
K:
[
close SCOP info
]
CATH Domains
(0, 0)
Info
all CATH domains
View:
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Label:
Sorry, no Info available
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Pfam Domains
(0, 0)
Info
all PFAM domains
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Sorry, no Info available
[
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Asymmetric Unit 1
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Asym.Unit (347 KB)
Header - Asym.Unit
Biol.Unit 1 (89 KB)
Header - Biol.Unit 1
Biol.Unit 2 (90 KB)
Header - Biol.Unit 2
Biol.Unit 3 (90 KB)
Header - Biol.Unit 3
Biol.Unit 4 (88 KB)
Header - Biol.Unit 4
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