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Getting 'Biological Unit' information from database.
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4FKE
Asym. Unit
Info
Asym.Unit (381 KB)
Biol.Unit 1 (373 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF PORCINE AMINOPEPTIDASE-N
Authors
:
L. Chen, Y. L. Lin, G. Peng, F. Li
Date
:
13 Jun 12 (Deposition) - 17 Oct 12 (Release) - 14 Nov 12 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.85
Chains
:
Asym. Unit : A
Biol. Unit 1: A (1x)
Keywords
:
Zinc Aminopeptidase, Hydrolase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
L. Chen, Y. L. Lin, G. Peng, F. Li
Structural Basis For Multifunctional Roles Of Mammalian Aminopeptidase N.
Proc. Natl. Acad. Sci. Usa V. 109 17966 2012
[
close entry info
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Hetero Components
(2, 24)
Info
All Hetero Components
1a: N-ACETYL-D-GLUCOSAMINE (NAGa)
1b: N-ACETYL-D-GLUCOSAMINE (NAGb)
1c: N-ACETYL-D-GLUCOSAMINE (NAGc)
1d: N-ACETYL-D-GLUCOSAMINE (NAGd)
1e: N-ACETYL-D-GLUCOSAMINE (NAGe)
1f: N-ACETYL-D-GLUCOSAMINE (NAGf)
1g: N-ACETYL-D-GLUCOSAMINE (NAGg)
1h: N-ACETYL-D-GLUCOSAMINE (NAGh)
1i: N-ACETYL-D-GLUCOSAMINE (NAGi)
1j: N-ACETYL-D-GLUCOSAMINE (NAGj)
1k: N-ACETYL-D-GLUCOSAMINE (NAGk)
1l: N-ACETYL-D-GLUCOSAMINE (NAGl)
1m: N-ACETYL-D-GLUCOSAMINE (NAGm)
1n: N-ACETYL-D-GLUCOSAMINE (NAGn)
1o: N-ACETYL-D-GLUCOSAMINE (NAGo)
1p: N-ACETYL-D-GLUCOSAMINE (NAGp)
1q: N-ACETYL-D-GLUCOSAMINE (NAGq)
1r: N-ACETYL-D-GLUCOSAMINE (NAGr)
1s: N-ACETYL-D-GLUCOSAMINE (NAGs)
1t: N-ACETYL-D-GLUCOSAMINE (NAGt)
1u: N-ACETYL-D-GLUCOSAMINE (NAGu)
1v: N-ACETYL-D-GLUCOSAMINE (NAGv)
1w: N-ACETYL-D-GLUCOSAMINE (NAGw)
2a: ZINC ION (ZNa)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
NAG
23
Ligand/Ion
N-ACETYL-D-GLUCOSAMINE
2
ZN
1
Ligand/Ion
ZINC ION
[
close Hetero Component info
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Sites
(24, 24)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
19: CC1 (SOFTWARE)
20: CC2 (SOFTWARE)
21: CC3 (SOFTWARE)
22: CC4 (SOFTWARE)
23: CC5 (SOFTWARE)
24: CC6 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
ASN A:82 , ILE A:104 , GLU A:172 , NAG A:1002 , NAG A:1007 , HOH A:1573 , HOH A:1627 , HOH A:1741 , HOH A:1885 , HOH A:1891 , HOH A:2059 , HOH A:2200
BINDING SITE FOR RESIDUE NAG A 1001
02
AC2
SOFTWARE
NAG A:1001 , NAG A:1003 , NAG A:1007 , HOH A:1741 , HOH A:1885 , HOH A:2376 , HOH A:2473
BINDING SITE FOR RESIDUE NAG A 1002
03
AC3
SOFTWARE
NAG A:1002
BINDING SITE FOR RESIDUE NAG A 1003
04
AC4
SOFTWARE
ASN A:124 , GLN A:178 , GLY A:179 , GLU A:180 , NAG A:1005 , HOH A:1156 , HOH A:2039 , HOH A:2443
BINDING SITE FOR RESIDUE NAG A 1004
05
AC5
SOFTWARE
NAG A:1004 , NAG A:1006
BINDING SITE FOR RESIDUE NAG A 1005
06
AC6
SOFTWARE
NAG A:1005 , HOH A:2475
BINDING SITE FOR RESIDUE NAG A 1006
07
AC7
SOFTWARE
SER A:80 , ASN A:82 , ARG A:106 , ASN A:229 , THR A:266 , NAG A:1001 , NAG A:1002 , NAG A:1008 , HOH A:1490 , HOH A:2219 , HOH A:2249
BINDING SITE FOR RESIDUE NAG A 1007
08
AC8
SOFTWARE
ARG A:106 , NAG A:1007 , HOH A:1151 , HOH A:1716 , HOH A:2331
BINDING SITE FOR RESIDUE NAG A 1008
09
AC9
SOFTWARE
LYS A:200 , ASN A:237 , GLU A:281 , NAG A:1010 , HOH A:2015
BINDING SITE FOR RESIDUE NAG A 1009
10
BC1
SOFTWARE
NAG A:1009 , HOH A:2511 , HOH A:2593
BINDING SITE FOR RESIDUE NAG A 1010
11
BC2
SOFTWARE
TYR A:311 , ASN A:314 , LYS A:374 , NAG A:1012 , HOH A:2077 , HOH A:2291
BINDING SITE FOR RESIDUE NAG A 1011
12
BC3
SOFTWARE
LEU A:153 , NAG A:1011 , NAG A:1013 , HOH A:1531 , HOH A:1823 , HOH A:2002 , HOH A:2264
BINDING SITE FOR RESIDUE NAG A 1012
13
BC4
SOFTWARE
NAG A:1012 , HOH A:1688 , HOH A:2261 , HOH A:2446
BINDING SITE FOR RESIDUE NAG A 1013
14
BC5
SOFTWARE
ALA A:223 , PHE A:502 , GLN A:505 , ASN A:506 , NAG A:1015 , HOH A:1170 , HOH A:1498 , HOH A:1956 , HOH A:2092
BINDING SITE FOR RESIDUE NAG A 1014
15
BC6
SOFTWARE
GLN A:505 , NAG A:1014 , HOH A:1697 , HOH A:2348 , HOH A:2397 , HOH A:2582
BINDING SITE FOR RESIDUE NAG A 1015
16
BC7
SOFTWARE
ASP A:551 , ASN A:556 , GLN A:603 , NAG A:1017 , HOH A:1665 , HOH A:2266
BINDING SITE FOR RESIDUE NAG A 1016
17
BC8
SOFTWARE
NAG A:1016 , HOH A:2467
BINDING SITE FOR RESIDUE NAG A 1017
18
BC9
SOFTWARE
ASN A:328 , NAG A:1019 , HOH A:1704 , HOH A:2020 , HOH A:2588
BINDING SITE FOR RESIDUE NAG A 1018
19
CC1
SOFTWARE
LEU A:108 , CYS A:109 , GLN A:110 , GLY A:168 , NAG A:1018 , HOH A:2082 , HOH A:2090 , HOH A:2337 , HOH A:2343 , HOH A:2397 , HOH A:2430
BINDING SITE FOR RESIDUE NAG A 1019
20
CC2
SOFTWARE
GLU A:567 , ASN A:569 , HOH A:2377 , HOH A:2463
BINDING SITE FOR RESIDUE NAG A 1020
21
CC3
SOFTWARE
ASP A:428 , VAL A:621 , ASN A:622 , NAG A:1022 , HOH A:1152 , HOH A:1225 , HOH A:1602 , HOH A:2324
BINDING SITE FOR RESIDUE NAG A 1021
22
CC4
SOFTWARE
NAG A:1021 , HOH A:1602 , HOH A:2130 , HOH A:2324
BINDING SITE FOR RESIDUE NAG A 1022
23
CC5
SOFTWARE
ASN A:646 , VAL A:649 , HOH A:1941 , HOH A:2360
BINDING SITE FOR RESIDUE NAG A 1023
24
CC6
SOFTWARE
HIS A:383 , HIS A:387 , GLU A:406 , HOH A:1526
BINDING SITE FOR RESIDUE ZN A 1024
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
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Sorry, no Info available
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PROSITE Patterns/Profiles
(0, 0)
Info
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;
View:
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End label:
Sorry, no Info available
[
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Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(0, 0)
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Sorry, no Info available
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CATH Domains
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all CATH domains
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Sorry, no Info available
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Pfam Domains
(0, 0)
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all PFAM domains
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Sorry, no Info available
[
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Atom Selection
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Protein & NOT Site
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Chain A
Asymmetric Unit 1
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Example Commands
Example Command
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select :A, :C
select chains 'A' and 'C'
select [ALA]:A
select all 'ALA' residues (Alanines) in chain 'A'
select 5-10
select residue range 5 to 10 in all chains
select 5-10:A
select residue range 5 to 10 in chain 'A'
select protein & not helix & not sheet
select non-helix/non-sheet protein parts
set fontsize 20
set label size to 20 (allowed range: 1-58)
ssbonds 100
show SS bonds with a radius of 100 units (=0.4Å)
wireframe 100
show bonds with a radius of 100 units (=0.4Å)
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In this "Basic Interface" any change in the selection of a pulldown menu automatically triggers an action (one-step mechanism).
View and selection are coupled in the structure specific controls (e.g. "Hetero","PROSITE") .
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Asym.Unit (381 KB)
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