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4FH6
Asym. Unit
Info
Asym.Unit (137 KB)
Biol.Unit 1 (131 KB)
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(1)
Title
:
STRUCTURE OF DHP A IN COMPLEX WITH 2,4,6-TRIBROMOPHENOL IN 10% DMSO
Authors
:
V. S. De Serrano, S. Franzen
Date
:
05 Jun 12 (Deposition) - 27 Mar 13 (Release) - 24 Apr 13 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.44
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (1x)
Keywords
:
Peroxidase, Globin, Oxidoreductase
(Keyword Search:
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Gene Ontology, PubMed, Web (Google)
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Reference
:
J. Zhao, V. De Serrano, J. Zhao, P. Le, S. Franzen
Structural And Kinetic Study Of An Internal Substrate Binding Site In Dehaloperoxidase-Hemoglobin A From Amphitrite Ornata.
Biochemistry V. 52 2427 2013
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Hetero Components
(5, 10)
Info
All Hetero Components
1a: DIMETHYL SULFOXIDE (DMSa)
2a: PROTOPORPHYRIN IX CONTAINING FE (HEMa)
2b: PROTOPORPHYRIN IX CONTAINING FE (HEMb)
3a: OXYGEN MOLECULE (OXYa)
3b: OXYGEN MOLECULE (OXYb)
4a: SULFATE ION (SO4a)
4b: SULFATE ION (SO4b)
4c: SULFATE ION (SO4c)
5a: 2,4,6-TRIBROMOPHENOL (TBPa)
5b: 2,4,6-TRIBROMOPHENOL (TBPb)
View:
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Label:
No.
Name
Count
Type
Full Name
1
DMS
1
Ligand/Ion
DIMETHYL SULFOXIDE
2
HEM
2
Ligand/Ion
PROTOPORPHYRIN IX CONTAINING FE
3
OXY
2
Ligand/Ion
OXYGEN MOLECULE
4
SO4
3
Ligand/Ion
SULFATE ION
5
TBP
2
Ligand/Ion
2,4,6-TRIBROMOPHENOL
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Sites
(10, 10)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
GLU A:31 , TYR A:34 , PHE A:35 , HIS A:55 , LYS A:58 , VAL A:59 , MET A:63 , LEU A:83 , MET A:86 , GLN A:88 , HIS A:89 , LEU A:92 , ASN A:96 , PHE A:97 , TBP A:203 , OXY A:204
BINDING SITE FOR RESIDUE HEM A 201
02
AC2
SOFTWARE
GLY A:1 , PHE A:2 , LYS A:3 , HOH A:310 , HOH A:326 , HOH A:377 , ARG B:32 , VAL B:39 , GLY B:40 , HOH B:312
BINDING SITE FOR RESIDUE SO4 A 202
03
AC3
SOFTWARE
ILE A:20 , PHE A:21 , PHE A:24 , PHE A:35 , VAL A:59 , PHE A:60 , MET A:63 , LEU A:100 , HEM A:201 , OXY A:204
BINDING SITE FOR RESIDUE TBP A 203
04
AC4
SOFTWARE
HIS A:55 , VAL A:59 , HEM A:201 , TBP A:203
BINDING SITE FOR RESIDUE OXY A 204
05
AC5
SOFTWARE
GLU B:31 , TYR B:34 , PHE B:35 , HIS B:55 , LYS B:58 , VAL B:59 , MET B:63 , MET B:86 , GLN B:88 , HIS B:89 , LEU B:92 , ASN B:96 , PHE B:97 , LEU B:127 , TBP B:203 , OXY B:205 , HOH B:374
BINDING SITE FOR RESIDUE HEM B 201
06
AC6
SOFTWARE
ARG A:32 , VAL A:39 , GLY A:40 , GLY B:1 , PHE B:2 , LYS B:3 , ASP B:116 , HOH B:317 , HOH B:329 , HOH B:348 , HOH B:387
BINDING SITE FOR RESIDUE SO4 B 202
07
AC7
SOFTWARE
PHE B:21 , PHE B:24 , PHE B:35 , VAL B:59 , MET B:63 , ASN B:96 , LYS B:99 , LEU B:100 , HEM B:201 , OXY B:205
BINDING SITE FOR RESIDUE TBP B 203
08
AC8
SOFTWARE
PHE B:35 , LYS B:36 , ASN B:37 , VAL B:39 , HOH B:341 , HOH B:430
BINDING SITE FOR RESIDUE DMS B 204
09
AC9
SOFTWARE
PHE B:21 , PHE B:35 , HIS B:55 , VAL B:59 , HEM B:201 , TBP B:203
BINDING SITE FOR RESIDUE OXY B 205
10
BC1
SOFTWARE
LYS A:99 , HOH A:401 , HOH A:402 , GLU B:31 , ARG B:33 , TYR B:34 , ASN B:96 , LYS B:99 , HOH B:426 , HOH B:427
BINDING SITE FOR RESIDUE SO4 B 206
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SAPs(SNPs)/Variants
(0, 0)
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(mutated residues are not available)
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PROSITE Patterns/Profiles
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Exons
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 2)
Info
All SCOP Domains
1a: SCOP_d4fh6a_ (A:)
1b: SCOP_d4fh6b_ (B:)
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Class
:
All alpha proteins
(14657)
Fold
:
Globin-like
(1351)
Superfamily
:
Globin-like
(1308)
Family
:
Globins
(1157)
Protein domain
:
Dehaloperoxidase
(30)
Amphitrite ornata [TaxId: 129555]
(30)
1a
d4fh6a_
A:
1b
d4fh6b_
B:
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CATH Domains
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Pfam Domains
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Asymmetric Unit 1
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Asym.Unit (137 KB)
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