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4FFO
Biol. Unit 1
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Asym.Unit (134 KB)
Biol.Unit 1 (128 KB)
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(1)
Title
:
PYLC IN COMPLEX WITH PHOSPHORYLATED D-ORNITHINE
Authors
:
F. Quitterer, A. List, P. Beck, A. Bacher, M. Groll
Date
:
01 Jun 12 (Deposition) - 19 Sep 12 (Release) - 27 Mar 13 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.00
Chains
:
Asym. Unit : A
Biol. Unit 1: A (1x)
Keywords
:
Amino Acid, Biosynthesis Of Pyrrolysine, Isopeptide Bond Formation, Atp-Grasp Fold, Ligase, L-Lysine And 3R-Methyl-D-Ornithine, Cytosol, Ligase-Reaction Intermediate Complex
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Reference
:
F. Quitterer, A. List, P. Beck, A. Bacher, M. Groll
Biosynthesis Of The 22Nd Genetically Encoded Amino Acid Pyrrolysine: Structure And Reaction Mechanism Of Pylc At 1. 5A Resolution.
J. Mol. Biol. V. 424 270 2012
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Hetero Components
(3, 3)
Info
All Hetero Components
1a: (2R)-2,5-DIAMINOPENTANOYL DIHYDROG... (0TKa)
2a: ADENOSINE-5'-DIPHOSPHATE (ADPa)
3a: ADENOSINE-5'-TRIPHOSPHATE (ATPa)
4a: MAGNESIUM ION (MGa)
4b: MAGNESIUM ION (MGb)
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No.
Name
Count
Type
Full Name
1
0TK
1
Ligand/Ion
(2R)-2,5-DIAMINOPENTANOYL DIHYDROGEN PHOSPHATE
2
ADP
1
Ligand/Ion
ADENOSINE-5'-DIPHOSPHATE
3
ATP
1
Ligand/Ion
ADENOSINE-5'-TRIPHOSPHATE
4
MG
-1
Ligand/Ion
MAGNESIUM ION
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Sites
(5, 5)
Info
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1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
5: AC5 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
SER A:136 , SER A:137 , SER A:169 , GLU A:171 , ASP A:225 , GLU A:227 , GLU A:239 , ASP A:241 , ARG A:243 , SER A:246 , GLN A:247 , THR A:248 , GLU A:302 , ADP A:902 , MG A:903 , MG A:904 , HOH A:1019 , HOH A:1204 , HOH A:1211 , HOH A:1222
BINDING SITE FOR RESIDUE 0TK A 901
2
AC2
SOFTWARE
LYS A:104 , PHE A:129 , LYS A:131 , GLU A:135 , SER A:136 , SER A:137 , SER A:138 , GLU A:160 , GLU A:161 , TYR A:162 , VAL A:163 , VAL A:167 , ILE A:189 , GLU A:227 , ILE A:229 , ILE A:238 , GLU A:239 , 0TK A:901 , MG A:903 , MG A:904 , HOH A:1011 , HOH A:1018 , HOH A:1029 , HOH A:1211 , HOH A:1236
BINDING SITE FOR RESIDUE ADP A 902
3
AC3
SOFTWARE
GLU A:227 , GLU A:239 , 0TK A:901 , ADP A:902 , MG A:904 , HOH A:1211
BINDING SITE FOR RESIDUE MG A 903
4
AC4
SOFTWARE
GLU A:239 , ASP A:241 , 0TK A:901 , ADP A:902 , MG A:903 , HOH A:1236
BINDING SITE FOR RESIDUE MG A 904
5
AC5
SOFTWARE
GLY A:8 , LYS A:10 , ASP A:31 , LYS A:32 , PHE A:48 , ASP A:49 , VAL A:50 , ILE A:51 , ASN A:71 , GLU A:72 , ASN A:73 , CYS A:76 , HOH A:1036 , HOH A:1097 , HOH A:1178 , HOH A:1218
BINDING SITE FOR RESIDUE ATP A 905
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SAPs(SNPs)/Variants
(0, 0)
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SCOP Domains
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Chain A
Asymmetric Unit 1
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Asym.Unit (134 KB)
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