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Asym. Unit
Info
Asym.Unit (120 KB)
Biol.Unit 1 (114 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF A TRIMERIC BACTERIAL MICROCOMPARTMENT SHELL PROTEIN PDUB WITH GLYCEROL METABOLITES
Authors
:
A. H. Pang, M. B. Prentice, R. W. Pickersgill
Date
:
22 May 12 (Deposition) - 21 Nov 12 (Release) - 12 Dec 12 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.56
Chains
:
Asym. Unit : A,B,C
Biol. Unit 1: A,B,C (1x)
Keywords
:
Bmc Domain, Shell Protein, Glycerol-Binding Protein
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
A. Pang, M. Liang, M. B. Prentice, R. W. Pickersgill
Substrate Channels Revealed In The Trimeric Lactobacillus Reuteri Bacterial Microcompartment Shell Protein Pdub.
Acta Crystallogr. , Sect. D V. 68 1642 2012
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Hetero Components
(2, 18)
Info
All Hetero Components
1a: ACETATE ION (ACTa)
2a: GLYCEROL (GOLa)
2b: GLYCEROL (GOLb)
2c: GLYCEROL (GOLc)
2d: GLYCEROL (GOLd)
2e: GLYCEROL (GOLe)
2f: GLYCEROL (GOLf)
2g: GLYCEROL (GOLg)
2h: GLYCEROL (GOLh)
2i: GLYCEROL (GOLi)
2j: GLYCEROL (GOLj)
2k: GLYCEROL (GOLk)
2l: GLYCEROL (GOLl)
2m: GLYCEROL (GOLm)
2n: GLYCEROL (GOLn)
2o: GLYCEROL (GOLo)
2p: GLYCEROL (GOLp)
2q: GLYCEROL (GOLq)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
ACT
1
Ligand/Ion
ACETATE ION
2
GOL
17
Ligand/Ion
GLYCEROL
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Sites
(18, 18)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
View:
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No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
TRP A:80 , GLY A:189 , THR A:190 , SER A:191 , HOH A:525 , HOH A:531 , HOH C:418
BINDING SITE FOR RESIDUE GOL A 301
02
AC2
SOFTWARE
ALA A:57 , GLY A:58 , HIS A:90 , GLU A:131 , GLU A:195 , CYS A:197 , GOL A:303 , HOH A:403
BINDING SITE FOR RESIDUE GOL A 302
03
AC3
SOFTWARE
GLY A:56 , ALA A:57 , PRO A:59 , GLY A:89 , HIS A:90 , GLU A:131 , GLU A:195 , GOL A:302 , GOL A:304
BINDING SITE FOR RESIDUE GOL A 303
04
AC4
SOFTWARE
THR A:55 , GLY A:87 , VAL A:122 , ASN A:124 , HIS A:129 , GOL A:303 , HOH A:506
BINDING SITE FOR RESIDUE GOL A 304
05
AC5
SOFTWARE
ASP A:37 , LEU A:39 , HIS A:40 , LYS A:152 , HOH A:459 , HOH A:462 , HOH A:465 , HOH A:473
BINDING SITE FOR RESIDUE GOL A 305
06
AC6
SOFTWARE
ARG A:82 , ASP A:83 , GLY A:86 , GLY A:87 , HOH A:434 , ARG B:82 , ASP B:83 , HOH B:419 , ARG C:82 , HOH C:452
BINDING SITE FOR RESIDUE GOL A 306
07
AC7
SOFTWARE
LEU A:173 , LYS A:174 , ALA A:176 , ALA C:136 , ARG C:137 , HOH C:466
BINDING SITE FOR RESIDUE GOL A 307
08
AC8
SOFTWARE
HOH A:413 , TRP B:80 , GLY B:189 , THR B:190 , SER B:191
BINDING SITE FOR RESIDUE GOL B 301
09
AC9
SOFTWARE
ALA B:57 , GLY B:58 , HIS B:90 , GLU B:131 , GLU B:195 , CYS B:197 , GOL B:303 , HOH B:417
BINDING SITE FOR RESIDUE GOL B 302
10
BC1
SOFTWARE
GLY B:56 , ALA B:57 , PRO B:59 , GLY B:89 , HIS B:90 , GLU B:131 , GLU B:195 , GOL B:302 , GOL B:304
BINDING SITE FOR RESIDUE GOL B 303
11
BC2
SOFTWARE
THR B:84 , GLY B:87 , VAL B:122 , ASN B:124 , HIS B:129 , GOL B:303 , HOH B:472
BINDING SITE FOR RESIDUE GOL B 304
12
BC3
SOFTWARE
HOH A:464 , ASP B:37 , LYS B:38 , LEU B:39 , HIS B:40 , HOH B:452
BINDING SITE FOR RESIDUE GOL B 305
13
BC4
SOFTWARE
ALA A:136 , ARG A:137 , HOH A:432 , LEU B:173 , LYS B:174 , ALA B:176
BINDING SITE FOR RESIDUE GOL B 306
14
BC5
SOFTWARE
ALA B:136 , ARG B:137 , HOH B:483 , LEU C:173 , LYS C:174 , ALA C:176
BINDING SITE FOR RESIDUE ACT B 307
15
BC6
SOFTWARE
HOH B:436 , TRP C:80 , GLY C:189 , THR C:190 , SER C:191 , HOH C:447 , HOH C:500
BINDING SITE FOR RESIDUE GOL C 301
16
BC7
SOFTWARE
ALA C:57 , GLY C:58 , HIS C:90 , GLU C:131 , GLU C:195 , CYS C:197 , GOL C:303 , HOH C:406
BINDING SITE FOR RESIDUE GOL C 302
17
BC8
SOFTWARE
GLY C:56 , ALA C:57 , GLY C:58 , PRO C:59 , THR C:84 , GLY C:89 , HIS C:90 , GLU C:131 , GLU C:195 , GOL C:302 , GOL C:304
BINDING SITE FOR RESIDUE GOL C 303
18
BC9
SOFTWARE
THR C:55 , GLY C:87 , VAL C:122 , ASN C:124 , HIS C:129 , GOL C:303 , HOH C:455
BINDING SITE FOR RESIDUE GOL C 304
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SAPs(SNPs)/Variants
(0, 0)
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(mutated residues are not available)
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PROSITE Patterns/Profiles
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Exons
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