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4F9T
Asym. Unit
Info
Asym.Unit (105 KB)
Biol.Unit 1 (100 KB)
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(1)
Title
:
RIBOSOMAL PROTEIN L1 FROM THERMUS THERMOPHILUS WITH SUBSTITUTION THR217ALA
Authors
:
V. G. Kljashtorny, S. A. Volchkov, E. Y. Nikonova, O. S. Kostareva, S. V. Tishchenko, N. A. Nevskaya, S. V. Nikonov
Date
:
21 May 12 (Deposition) - 08 Aug 12 (Release) - 12 Nov 14 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.46
Chains
:
Asym. Unit : A
Biol. Unit 1: A (1x)
Keywords
:
Rossmann Fold, Ribosomal Protein, Rna
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
E. I. U. Nikonova, S. A. Volchkov, V. G. Kliashtornyi, S. V. Tishchenko O. S. Kostareva, N. A. Nevskaia, O. S. Nikonov, A. G. Gabdulkhakov, A. D. Nikulin, N. L. Davydova, V. A. Strel'Tsov, M. B. Garber, S. V. Nikonov
[Crystal Structures Of Mutant Ribosomal Proteins L1].
Mol. Biol. (Moscow) V. 41 688 2007
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Hetero Components
(3, 14)
Info
All Hetero Components
1a: (4S)-2-METHYL-2,4-PENTANEDIOL (MPDa)
1b: (4S)-2-METHYL-2,4-PENTANEDIOL (MPDb)
1c: (4S)-2-METHYL-2,4-PENTANEDIOL (MPDc)
2a: (4R)-2-METHYLPENTANE-2,4-DIOL (MRDa)
3a: SULFATE ION (SO4a)
3b: SULFATE ION (SO4b)
3c: SULFATE ION (SO4c)
3d: SULFATE ION (SO4d)
3e: SULFATE ION (SO4e)
3f: SULFATE ION (SO4f)
3g: SULFATE ION (SO4g)
3h: SULFATE ION (SO4h)
3i: SULFATE ION (SO4i)
3j: SULFATE ION (SO4j)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
MPD
3
Ligand/Ion
(4S)-2-METHYL-2,4-PENTANEDIOL
2
MRD
1
Ligand/Ion
(4R)-2-METHYLPENTANE-2,4-DIOL
3
SO4
10
Ligand/Ion
SULFATE ION
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Sites
(14, 14)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
View:
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No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
GLY A:67 , VAL A:72 , ASP A:111 , GLY A:176 , LYS A:177 , MPD A:303 , HOH A:473
BINDING SITE FOR RESIDUE MPD A 301
02
AC2
SOFTWARE
ARG A:8 , LEU A:11 , GLU A:12 , ILE A:193 , GLU A:197 , HIS A:227 , HOH A:653
BINDING SITE FOR RESIDUE MPD A 302
03
AC3
SOFTWARE
THR A:40 , ALA A:112 , VAL A:113 , GLY A:135 , LEU A:136 , ILE A:161 , PRO A:174 , LYS A:177 , MPD A:301 , HOH A:440 , HOH A:441 , HOH A:597 , HOH A:611
BINDING SITE FOR RESIDUE MPD A 303
04
AC4
SOFTWARE
LYS A:2 , ASN A:148 , GLU A:151 , GLU A:155 , GLU A:162 , HOH A:528
BINDING SITE FOR RESIDUE MRD A 304
05
AC5
SOFTWARE
ARG A:53 , LYS A:79 , GLY A:80 , ILE A:83 , GLY A:96 , HOH A:420 , HOH A:471 , HOH A:555 , HOH A:590 , HOH A:683 , HOH A:684
BINDING SITE FOR RESIDUE SO4 A 305
06
AC6
SOFTWARE
GLU A:197 , LYS A:200 , THR A:207 , PHE A:208 , LEU A:209 , HIS A:227 , HOH A:449 , HOH A:477 , HOH A:564 , HOH A:671
BINDING SITE FOR RESIDUE SO4 A 306
07
AC7
SOFTWARE
PRO A:65 , HIS A:66 , GLY A:67 , GLN A:71 , LYS A:184 , HOH A:406 , HOH A:696 , HOH A:704
BINDING SITE FOR RESIDUE SO4 A 307
08
AC8
SOFTWARE
LYS A:18 , GLY A:60 , THR A:61 , HIS A:199 , HOH A:491 , HOH A:634
BINDING SITE FOR RESIDUE SO4 A 308
09
AC9
SOFTWARE
HIS A:27 , GLN A:101 , LYS A:126 , PRO A:182 , GLU A:183 , HOH A:427 , HOH A:553 , HOH A:642 , HOH A:647
BINDING SITE FOR RESIDUE SO4 A 309
10
BC1
SOFTWARE
TYR A:7 , LYS A:82 , SER A:221 , HOH A:576
BINDING SITE FOR RESIDUE SO4 A 310
11
BC2
SOFTWARE
HIS A:172 , HOH A:452 , HOH A:570 , HOH A:573
BINDING SITE FOR RESIDUE SO4 A 311
12
BC3
SOFTWARE
LYS A:2 , HIS A:3 , GLY A:4 , TYR A:7 , MET A:218
BINDING SITE FOR RESIDUE SO4 A 312
13
BC4
SOFTWARE
HIS A:44 , TYR A:213 , THR A:215 , SER A:221 , HOH A:516 , HOH A:680
BINDING SITE FOR RESIDUE SO4 A 313
14
BC5
SOFTWARE
THR A:34 , ALA A:35 , LYS A:36 , ARG A:73 , HOH A:588 , HOH A:674
BINDING SITE FOR RESIDUE SO4 A 314
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SAPs(SNPs)/Variants
(0, 0)
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(mutated residues are not available)
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PROSITE Patterns/Profiles
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Exons
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
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CATH Domains
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Pfam Domains
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Chain A
Asymmetric Unit 1
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