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4F86
Biol. Unit 2
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Asym.Unit (535 KB)
Biol.Unit 1 (266 KB)
Biol.Unit 2 (264 KB)
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(1)
Title
:
STRUCTURE ANALYSIS OF GERANYL DIPHOSPHATE METHYLTRANSFERASE IN COMPLEX WITH GPP AND SINEFUNGIN
Authors
:
O. Ariyawutthiphan, T. Ose, A. Minami, Y. G. Gao, M. Yao, H. Oikawa, I. Ta
Date
:
17 May 12 (Deposition) - 31 Oct 12 (Release) - 07 Aug 13 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
3.00
Chains
:
Asym. Unit : A,B,C,D,E,F,G,H,I,J,K,L
Biol. Unit 1: A,B,C,D,E,F (1x)
Biol. Unit 2: G,H,I,J,K,L (1x)
Keywords
:
Alpha/Beta, Rossmann Fold, Methyltransferase, Transferase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
O. Ariyawutthiphan, T. Ose, A. Minami, S. Sinde, M. Tsuda, Y. -G. Gao, M. Yao, H. Oikawa, I. Tanaka
Structure Analysis Of Geranyl Pyrophosphate Methyltransferase And The Proposed Reaction Mechanism Of Sam-Dependent C-Methylation
Acta Crystallogr. , Sect. D V. 68 1558 2012
[
close entry info
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Hetero Components
(2, 12)
Info
All Hetero Components
1a: GERANYL DIPHOSPHATE (GPPa)
1b: GERANYL DIPHOSPHATE (GPPb)
1c: GERANYL DIPHOSPHATE (GPPc)
1d: GERANYL DIPHOSPHATE (GPPd)
1e: GERANYL DIPHOSPHATE (GPPe)
1f: GERANYL DIPHOSPHATE (GPPf)
1g: GERANYL DIPHOSPHATE (GPPg)
1h: GERANYL DIPHOSPHATE (GPPh)
1i: GERANYL DIPHOSPHATE (GPPi)
1j: GERANYL DIPHOSPHATE (GPPj)
1k: GERANYL DIPHOSPHATE (GPPk)
1l: GERANYL DIPHOSPHATE (GPPl)
2a: MAGNESIUM ION (MGa)
2b: MAGNESIUM ION (MGb)
2c: MAGNESIUM ION (MGc)
2d: MAGNESIUM ION (MGd)
2e: MAGNESIUM ION (MGe)
2f: MAGNESIUM ION (MGf)
2g: MAGNESIUM ION (MGg)
2h: MAGNESIUM ION (MGh)
2i: MAGNESIUM ION (MGi)
2j: MAGNESIUM ION (MGj)
2k: MAGNESIUM ION (MGk)
2l: MAGNESIUM ION (MGl)
3a: SINEFUNGIN (SFGa)
3b: SINEFUNGIN (SFGb)
3c: SINEFUNGIN (SFGc)
3d: SINEFUNGIN (SFGd)
3e: SINEFUNGIN (SFGe)
3f: SINEFUNGIN (SFGf)
3g: SINEFUNGIN (SFGg)
3h: SINEFUNGIN (SFGh)
3i: SINEFUNGIN (SFGi)
3j: SINEFUNGIN (SFGj)
3k: SINEFUNGIN (SFGk)
3l: SINEFUNGIN (SFGl)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
GPP
6
Ligand/Ion
GERANYL DIPHOSPHATE
2
MG
-1
Ligand/Ion
MAGNESIUM ION
3
SFG
6
Ligand/Ion
SINEFUNGIN
[
close Hetero Component info
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Sites
(18, 18)
Info
All Sites
01: CC1 (SOFTWARE)
02: CC2 (SOFTWARE)
03: CC3 (SOFTWARE)
04: CC4 (SOFTWARE)
05: CC5 (SOFTWARE)
06: CC6 (SOFTWARE)
07: CC7 (SOFTWARE)
08: CC8 (SOFTWARE)
09: CC9 (SOFTWARE)
10: DC1 (SOFTWARE)
11: DC2 (SOFTWARE)
12: DC3 (SOFTWARE)
13: DC4 (SOFTWARE)
14: DC5 (SOFTWARE)
15: DC6 (SOFTWARE)
16: DC7 (SOFTWARE)
17: DC8 (SOFTWARE)
18: DC9 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
CC1
SOFTWARE
ILE G:33 , TRP G:37 , HIS G:57 , HIS G:58 , GLY G:113 , CYS G:114 , GLY G:115 , THR G:135 , LEU G:136 , GLN G:140 , CYS G:162 , ASN G:163 , MET G:164 , ASN G:180 , GLU G:181 , SER G:182 , TYR G:185 , VAL G:186 , GPP G:502
BINDING SITE FOR RESIDUE SFG G 501
02
CC2
SOFTWARE
TRP G:37 , ARG G:42 , VAL G:44 , ASN G:45 , HIS G:57 , TYR G:59 , GLU G:181 , MET G:184 , TYR G:185 , ILE G:226 , PHE G:230 , ARG G:268 , THR G:275 , PHE G:281 , SFG G:501 , MG G:503
BINDING SITE FOR RESIDUE GPP G 502
03
CC3
SOFTWARE
ASN G:45 , HIS G:58 , GLU G:89 , GPP G:502
BINDING SITE FOR RESIDUE MG G 503
04
CC4
SOFTWARE
TRP H:37 , HIS H:57 , HIS H:58 , GLY H:113 , CYS H:114 , GLY H:115 , SER H:119 , THR H:135 , LEU H:136 , GLN H:140 , CYS H:162 , ASN H:163 , MET H:164 , ASN H:180 , GLU H:181 , SER H:182 , TYR H:185 , VAL H:186 , GPP H:502
BINDING SITE FOR RESIDUE SFG H 501
05
CC5
SOFTWARE
TRP H:37 , ARG H:42 , HIS H:57 , TYR H:59 , GLU H:181 , MET H:184 , TYR H:185 , GLY H:210 , ARG H:268 , THR H:275 , PHE H:281 , SFG H:501 , MG H:503
BINDING SITE FOR RESIDUE GPP H 502
06
CC6
SOFTWARE
HIS H:58 , GLU H:89 , GPP H:502
BINDING SITE FOR RESIDUE MG H 503
07
CC7
SOFTWARE
GLN I:30 , TRP I:37 , HIS I:57 , HIS I:58 , GLY I:113 , CYS I:114 , GLY I:115 , THR I:135 , LEU I:136 , GLN I:140 , CYS I:162 , ASN I:163 , MET I:164 , ASN I:180 , GLU I:181 , SER I:182 , TYR I:185 , VAL I:186 , GPP I:502
BINDING SITE FOR RESIDUE SFG I 501
08
CC8
SOFTWARE
ARG I:42 , VAL I:44 , ASN I:45 , HIS I:57 , HIS I:58 , TYR I:59 , GLU I:181 , MET I:184 , GLY I:210 , PHE I:230 , ARG I:268 , PHE I:281 , SFG I:501 , MG I:503
BINDING SITE FOR RESIDUE GPP I 502
09
CC9
SOFTWARE
ASN I:45 , HIS I:58 , GLU I:89 , GPP I:502
BINDING SITE FOR RESIDUE MG I 503
10
DC1
SOFTWARE
GLN J:30 , TRP J:37 , HIS J:57 , HIS J:58 , ASP J:111 , GLY J:113 , CYS J:114 , GLY J:115 , SER J:119 , THR J:135 , LEU J:136 , GLN J:140 , CYS J:162 , ASN J:163 , MET J:164 , ASN J:180 , GLU J:181 , SER J:182 , TYR J:185 , VAL J:186
BINDING SITE FOR RESIDUE SFG J 501
11
DC2
SOFTWARE
TRP J:37 , ARG J:42 , ASN J:45 , HIS J:57 , HIS J:58 , TYR J:59 , GLU J:181 , MET J:184 , TYR J:185 , PHE J:230 , ARG J:268 , PHE J:281 , MG J:503
BINDING SITE FOR RESIDUE GPP J 502
12
DC3
SOFTWARE
ASN J:45 , HIS J:58 , GLU J:89 , GPP J:502
BINDING SITE FOR RESIDUE MG J 503
13
DC4
SOFTWARE
HIS K:57 , HIS K:58 , GLY K:113 , GLY K:115 , SER K:119 , THR K:135 , LEU K:136 , GLN K:140 , CYS K:162 , ASN K:163 , MET K:164 , ASN K:180 , GLU K:181 , SER K:182 , TYR K:185 , VAL K:186 , GPP K:502
BINDING SITE FOR RESIDUE SFG K 501
14
DC5
SOFTWARE
ASN K:45 , HIS K:57 , HIS K:58 , TYR K:59 , GLU K:181 , MET K:184 , PHE K:230 , ARG K:268 , THR K:275 , SFG K:501 , MG K:503
BINDING SITE FOR RESIDUE GPP K 502
15
DC6
SOFTWARE
ASN K:45 , HIS K:58 , GLU K:89 , GPP K:502
BINDING SITE FOR RESIDUE MG K 503
16
DC7
SOFTWARE
GLN L:30 , TRP L:37 , HIS L:57 , HIS L:58 , GLY L:113 , GLY L:115 , THR L:135 , LEU L:136 , GLN L:140 , CYS L:162 , ASN L:163 , MET L:164 , ASN L:180 , GLU L:181 , SER L:182 , TYR L:185 , VAL L:186
BINDING SITE FOR RESIDUE SFG L 501
17
DC8
SOFTWARE
TRP L:37 , ARG L:42 , ASN L:45 , HIS L:57 , TYR L:59 , GLU L:181 , MET L:184 , PHE L:230 , ARG L:268 , MG L:503
BINDING SITE FOR RESIDUE GPP L 502
18
DC9
SOFTWARE
ASN L:45 , HIS L:58 , GLU L:89 , GPP L:502
BINDING SITE FOR RESIDUE MG L 503
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]
SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are only available for the asymmetric unit)
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PROSITE Patterns/Profiles
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Exons
(0, 0)
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SCOP Domains
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Asymmetric Unit 1
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Asym.Unit (535 KB)
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