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4F86
Biol. Unit 1
Info
Asym.Unit (535 KB)
Biol.Unit 1 (266 KB)
Biol.Unit 2 (264 KB)
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(1)
Title
:
STRUCTURE ANALYSIS OF GERANYL DIPHOSPHATE METHYLTRANSFERASE IN COMPLEX WITH GPP AND SINEFUNGIN
Authors
:
O. Ariyawutthiphan, T. Ose, A. Minami, Y. G. Gao, M. Yao, H. Oikawa, I. Ta
Date
:
17 May 12 (Deposition) - 31 Oct 12 (Release) - 07 Aug 13 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
3.00
Chains
:
Asym. Unit : A,B,C,D,E,F,G,H,I,J,K,L
Biol. Unit 1: A,B,C,D,E,F (1x)
Biol. Unit 2: G,H,I,J,K,L (1x)
Keywords
:
Alpha/Beta, Rossmann Fold, Methyltransferase, Transferase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
O. Ariyawutthiphan, T. Ose, A. Minami, S. Sinde, M. Tsuda, Y. -G. Gao, M. Yao, H. Oikawa, I. Tanaka
Structure Analysis Of Geranyl Pyrophosphate Methyltransferase And The Proposed Reaction Mechanism Of Sam-Dependent C-Methylation
Acta Crystallogr. , Sect. D V. 68 1558 2012
[
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Hetero Components
(2, 12)
Info
All Hetero Components
1a: GERANYL DIPHOSPHATE (GPPa)
1b: GERANYL DIPHOSPHATE (GPPb)
1c: GERANYL DIPHOSPHATE (GPPc)
1d: GERANYL DIPHOSPHATE (GPPd)
1e: GERANYL DIPHOSPHATE (GPPe)
1f: GERANYL DIPHOSPHATE (GPPf)
1g: GERANYL DIPHOSPHATE (GPPg)
1h: GERANYL DIPHOSPHATE (GPPh)
1i: GERANYL DIPHOSPHATE (GPPi)
1j: GERANYL DIPHOSPHATE (GPPj)
1k: GERANYL DIPHOSPHATE (GPPk)
1l: GERANYL DIPHOSPHATE (GPPl)
2a: MAGNESIUM ION (MGa)
2b: MAGNESIUM ION (MGb)
2c: MAGNESIUM ION (MGc)
2d: MAGNESIUM ION (MGd)
2e: MAGNESIUM ION (MGe)
2f: MAGNESIUM ION (MGf)
2g: MAGNESIUM ION (MGg)
2h: MAGNESIUM ION (MGh)
2i: MAGNESIUM ION (MGi)
2j: MAGNESIUM ION (MGj)
2k: MAGNESIUM ION (MGk)
2l: MAGNESIUM ION (MGl)
3a: SINEFUNGIN (SFGa)
3b: SINEFUNGIN (SFGb)
3c: SINEFUNGIN (SFGc)
3d: SINEFUNGIN (SFGd)
3e: SINEFUNGIN (SFGe)
3f: SINEFUNGIN (SFGf)
3g: SINEFUNGIN (SFGg)
3h: SINEFUNGIN (SFGh)
3i: SINEFUNGIN (SFGi)
3j: SINEFUNGIN (SFGj)
3k: SINEFUNGIN (SFGk)
3l: SINEFUNGIN (SFGl)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
GPP
6
Ligand/Ion
GERANYL DIPHOSPHATE
2
MG
-1
Ligand/Ion
MAGNESIUM ION
3
SFG
6
Ligand/Ion
SINEFUNGIN
[
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Sites
(18, 18)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
GLN A:30 , HIS A:57 , HIS A:58 , GLY A:113 , CYS A:114 , GLY A:115 , SER A:119 , THR A:135 , LEU A:136 , GLN A:140 , CYS A:162 , ASN A:163 , MET A:164 , ASN A:180 , GLU A:181 , SER A:182 , TYR A:185 , VAL A:186 , GPP A:502
BINDING SITE FOR RESIDUE SFG A 501
02
AC2
SOFTWARE
TRP A:37 , ARG A:42 , VAL A:44 , ASN A:45 , HIS A:57 , TYR A:59 , GLU A:181 , MET A:184 , PHE A:230 , ARG A:268 , PHE A:281 , SFG A:501 , MG A:503
BINDING SITE FOR RESIDUE GPP A 502
03
AC3
SOFTWARE
VAL A:44 , ASN A:45 , HIS A:58 , GLU A:89 , GPP A:502
BINDING SITE FOR RESIDUE MG A 503
04
AC4
SOFTWARE
GLN B:30 , TRP B:37 , HIS B:57 , HIS B:58 , ASP B:111 , GLY B:113 , CYS B:114 , GLY B:115 , SER B:119 , THR B:135 , LEU B:136 , GLN B:140 , CYS B:162 , ASN B:163 , MET B:164 , ASN B:180 , GLU B:181 , SER B:182 , TYR B:185 , VAL B:186 , GPP B:502
BINDING SITE FOR RESIDUE SFG B 501
05
AC5
SOFTWARE
TRP B:37 , ARG B:42 , VAL B:44 , ASN B:45 , HIS B:57 , HIS B:58 , TYR B:59 , GLU B:181 , MET B:184 , PHE B:230 , ARG B:268 , SFG B:501 , MG B:503
BINDING SITE FOR RESIDUE GPP B 502
06
AC6
SOFTWARE
ASN B:45 , HIS B:58 , GLU B:89 , GPP B:502
BINDING SITE FOR RESIDUE MG B 503
07
AC7
SOFTWARE
TRP C:37 , HIS C:57 , HIS C:58 , GLY C:113 , CYS C:114 , GLY C:115 , THR C:135 , LEU C:136 , GLN C:140 , CYS C:162 , ASN C:163 , MET C:164 , ASN C:180 , GLU C:181 , SER C:182 , TYR C:185 , VAL C:186 , GPP C:502
BINDING SITE FOR RESIDUE SFG C 501
08
AC8
SOFTWARE
ARG C:42 , VAL C:44 , ASN C:45 , HIS C:57 , HIS C:58 , TYR C:59 , MET C:184 , TYR C:185 , GLY C:210 , PHE C:230 , ARG C:268 , THR C:275 , PHE C:281 , PHE C:290 , SFG C:501 , MG C:503
BINDING SITE FOR RESIDUE GPP C 502
09
AC9
SOFTWARE
ASN C:45 , HIS C:58 , GLU C:89 , TYR C:264 , GPP C:502
BINDING SITE FOR RESIDUE MG C 503
10
BC1
SOFTWARE
GLN D:30 , TRP D:37 , HIS D:57 , HIS D:58 , GLY D:113 , GLY D:115 , THR D:135 , LEU D:136 , GLN D:140 , CYS D:162 , ASN D:163 , MET D:164 , ASN D:180 , GLU D:181 , SER D:182 , TYR D:185 , VAL D:186 , GPP D:502
BINDING SITE FOR RESIDUE SFG D 501
11
BC2
SOFTWARE
TRP D:37 , ARG D:42 , VAL D:44 , ASN D:45 , HIS D:57 , HIS D:58 , TYR D:59 , GLU D:181 , MET D:184 , TYR D:185 , PHE D:230 , ARG D:268 , PHE D:281 , SFG D:501 , MG D:503
BINDING SITE FOR RESIDUE GPP D 502
12
BC3
SOFTWARE
ASN D:45 , HIS D:58 , GLU D:89 , TYR D:264 , GPP D:502
BINDING SITE FOR RESIDUE MG D 503
13
BC4
SOFTWARE
GLN E:30 , ILE E:33 , TRP E:37 , HIS E:57 , HIS E:58 , GLY E:113 , GLY E:115 , THR E:135 , LEU E:136 , GLN E:140 , CYS E:162 , ASN E:163 , MET E:164 , ASN E:180 , GLU E:181 , SER E:182 , TYR E:185 , VAL E:186 , GPP E:502
BINDING SITE FOR RESIDUE SFG E 501
14
BC5
SOFTWARE
TRP E:37 , ARG E:42 , VAL E:44 , ASN E:45 , HIS E:57 , TYR E:59 , GLU E:181 , MET E:184 , TYR E:185 , PHE E:230 , ARG E:268 , SFG E:501 , MG E:503
BINDING SITE FOR RESIDUE GPP E 502
15
BC6
SOFTWARE
ASN E:45 , HIS E:58 , GLU E:89 , GPP E:502
BINDING SITE FOR RESIDUE MG E 503
16
BC7
SOFTWARE
TRP F:37 , TYR F:55 , HIS F:57 , HIS F:58 , GLY F:113 , CYS F:114 , GLY F:115 , SER F:119 , THR F:135 , LEU F:136 , GLN F:140 , CYS F:162 , ASN F:163 , MET F:164 , ASN F:180 , GLU F:181 , SER F:182 , TYR F:185 , GPP F:502
BINDING SITE FOR RESIDUE SFG F 501
17
BC8
SOFTWARE
TRP F:37 , ARG F:42 , VAL F:44 , ASN F:45 , HIS F:57 , TYR F:59 , GLU F:181 , MET F:184 , TYR F:185 , GLY F:210 , ILE F:234 , ARG F:268 , PHE F:281 , PHE F:290 , SFG F:501 , MG F:503
BINDING SITE FOR RESIDUE GPP F 502
18
BC9
SOFTWARE
ASN F:45 , HIS F:58 , GLU F:89 , GPP F:502
BINDING SITE FOR RESIDUE MG F 503
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SAPs(SNPs)/Variants
(0, 0)
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Asymmetric Unit 1
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Asym.Unit (535 KB)
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