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4F3O
Biol. Unit 1
Info
Asym.Unit (649 KB)
Biol.Unit 1 (317 KB)
Biol.Unit 2 (327 KB)
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(1)
Title
:
DNA POLYMERASE I LARGE FRAGMENT COMPLEX 5
Authors
:
W. Wang, L. S. Beese
Date
:
09 May 12 (Deposition) - 24 Jul 13 (Release) - 24 Jul 13 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.57
Chains
:
Asym. Unit : A,B,C,D,E,F
Biol. Unit 1: A,B,C (1x)
Biol. Unit 2: D,E,F (1x)
Keywords
:
Dna Polymerase I, Protein-Dna Complex, Closed Form, Transferase-Dna Complex
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
W. Wang, H. W. Hellinga, L. S. Beese
Structures Of A High-Fidelity Dna Polymerase
To Be Published
(for further references see the
PDB file header
)
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Hetero Components
(3, 4)
Info
All Hetero Components
1a: 3'-DEOXYTHYMIDINE-5'-MONOPHOSPHATE (2DTa)
1b: 3'-DEOXYTHYMIDINE-5'-MONOPHOSPHATE (2DTb)
2a: 2',3'-DIDEOXY-THYMIDINE-5'-TRIPHOS... (D3Ta)
3a: MANGANESE (II) ION (MNa)
3b: MANGANESE (II) ION (MNb)
4a: (4S)-2-METHYL-2,4-PENTANEDIOL (MPDa)
5a: SULFATE ION (SO4a)
5b: SULFATE ION (SO4b)
5c: SULFATE ION (SO4c)
5d: SULFATE ION (SO4d)
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No.
Name
Count
Type
Full Name
1
2DT
1
Mod. Nucleotide
3'-DEOXYTHYMIDINE-5'-MONOPHOSPHATE
2
D3T
-1
Ligand/Ion
2',3'-DIDEOXY-THYMIDINE-5'-TRIPHOSPHATE
3
MN
-1
Ligand/Ion
MANGANESE (II) ION
4
MPD
1
Ligand/Ion
(4S)-2-METHYL-2,4-PENTANEDIOL
5
SO4
2
Ligand/Ion
SULFATE ION
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Sites
(4, 4)
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All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
ARG A:517 , ASN A:573
BINDING SITE FOR RESIDUE SO4 A 901
2
AC2
SOFTWARE
ARG A:779 , ASN A:780 , HOH A:1311 , PRO D:424
BINDING SITE FOR RESIDUE SO4 A 902
3
AC3
SOFTWARE
HOH A:1011 , HOH A:1380 , LEU D:352 , LYS D:383 , HOH D:1072
BINDING SITE FOR RESIDUE MPD A 903
4
AC4
SOFTWARE
ASP A:653 , TYR A:654 , ASP A:830
BINDING SITE FOR RESIDUE MN A 904
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SAPs(SNPs)/Variants
(0, 0)
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PROSITE Patterns/Profiles
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Exons
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Asym.Unit (649 KB)
Header - Asym.Unit
Biol.Unit 1 (317 KB)
Header - Biol.Unit 1
Biol.Unit 2 (327 KB)
Header - Biol.Unit 2
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