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4F35
Asym. Unit
Info
Asym.Unit (556 KB)
Biol.Unit 1 (273 KB)
Biol.Unit 2 (270 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF A BACTERIAL DICARBOXYLATE/SODIUM SYMPORTER
Authors
:
R. L. Mancusso, G. G. Gregorio, Q. Liu, D. N. Wang
Date
:
08 May 12 (Deposition) - 24 Oct 12 (Release) - 12 Dec 12 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
3.20
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: C,D (1x)
Biol. Unit 2: A,B (1x)
Keywords
:
Transporter, Transport Protein
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
R. Mancusso, G. G. Gregorio, Q. Liu, D. N. Wang
Structure And Mechanism Of A Bacterial Sodium-Dependent Dicarboxylate Transporter.
Nature V. 491 622 2012
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close entry info
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Hetero Components
(4, 97)
Info
All Hetero Components
1a: B-NONYLGLUCOSIDE (BNGa)
1b: B-NONYLGLUCOSIDE (BNGb)
1c: B-NONYLGLUCOSIDE (BNGc)
2a: CITRIC ACID (CITa)
2b: CITRIC ACID (CITb)
2c: CITRIC ACID (CITc)
3a: SELENOMETHIONINE (MSEa)
3aa: SELENOMETHIONINE (MSEaa)
3ab: SELENOMETHIONINE (MSEab)
3ac: SELENOMETHIONINE (MSEac)
3ad: SELENOMETHIONINE (MSEad)
3ae: SELENOMETHIONINE (MSEae)
3af: SELENOMETHIONINE (MSEaf)
3ag: SELENOMETHIONINE (MSEag)
3ah: SELENOMETHIONINE (MSEah)
3ai: SELENOMETHIONINE (MSEai)
3aj: SELENOMETHIONINE (MSEaj)
3ak: SELENOMETHIONINE (MSEak)
3al: SELENOMETHIONINE (MSEal)
3am: SELENOMETHIONINE (MSEam)
3an: SELENOMETHIONINE (MSEan)
3ao: SELENOMETHIONINE (MSEao)
3ap: SELENOMETHIONINE (MSEap)
3aq: SELENOMETHIONINE (MSEaq)
3ar: SELENOMETHIONINE (MSEar)
3as: SELENOMETHIONINE (MSEas)
3at: SELENOMETHIONINE (MSEat)
3au: SELENOMETHIONINE (MSEau)
3av: SELENOMETHIONINE (MSEav)
3aw: SELENOMETHIONINE (MSEaw)
3ax: SELENOMETHIONINE (MSEax)
3ay: SELENOMETHIONINE (MSEay)
3az: SELENOMETHIONINE (MSEaz)
3b: SELENOMETHIONINE (MSEb)
3ba: SELENOMETHIONINE (MSEba)
3bb: SELENOMETHIONINE (MSEbb)
3bc: SELENOMETHIONINE (MSEbc)
3bd: SELENOMETHIONINE (MSEbd)
3be: SELENOMETHIONINE (MSEbe)
3bf: SELENOMETHIONINE (MSEbf)
3bg: SELENOMETHIONINE (MSEbg)
3bh: SELENOMETHIONINE (MSEbh)
3bi: SELENOMETHIONINE (MSEbi)
3bj: SELENOMETHIONINE (MSEbj)
3bk: SELENOMETHIONINE (MSEbk)
3bl: SELENOMETHIONINE (MSEbl)
3bm: SELENOMETHIONINE (MSEbm)
3bn: SELENOMETHIONINE (MSEbn)
3bo: SELENOMETHIONINE (MSEbo)
3bp: SELENOMETHIONINE (MSEbp)
3bq: SELENOMETHIONINE (MSEbq)
3br: SELENOMETHIONINE (MSEbr)
3bs: SELENOMETHIONINE (MSEbs)
3bt: SELENOMETHIONINE (MSEbt)
3bu: SELENOMETHIONINE (MSEbu)
3bv: SELENOMETHIONINE (MSEbv)
3bw: SELENOMETHIONINE (MSEbw)
3bx: SELENOMETHIONINE (MSEbx)
3by: SELENOMETHIONINE (MSEby)
3bz: SELENOMETHIONINE (MSEbz)
3c: SELENOMETHIONINE (MSEc)
3ca: SELENOMETHIONINE (MSEca)
3cb: SELENOMETHIONINE (MSEcb)
3cc: SELENOMETHIONINE (MSEcc)
3cd: SELENOMETHIONINE (MSEcd)
3ce: SELENOMETHIONINE (MSEce)
3cf: SELENOMETHIONINE (MSEcf)
3cg: SELENOMETHIONINE (MSEcg)
3ch: SELENOMETHIONINE (MSEch)
3ci: SELENOMETHIONINE (MSEci)
3d: SELENOMETHIONINE (MSEd)
3e: SELENOMETHIONINE (MSEe)
3f: SELENOMETHIONINE (MSEf)
3g: SELENOMETHIONINE (MSEg)
3h: SELENOMETHIONINE (MSEh)
3i: SELENOMETHIONINE (MSEi)
3j: SELENOMETHIONINE (MSEj)
3k: SELENOMETHIONINE (MSEk)
3l: SELENOMETHIONINE (MSEl)
3m: SELENOMETHIONINE (MSEm)
3n: SELENOMETHIONINE (MSEn)
3o: SELENOMETHIONINE (MSEo)
3p: SELENOMETHIONINE (MSEp)
3q: SELENOMETHIONINE (MSEq)
3r: SELENOMETHIONINE (MSEr)
3s: SELENOMETHIONINE (MSEs)
3t: SELENOMETHIONINE (MSEt)
3u: SELENOMETHIONINE (MSEu)
3v: SELENOMETHIONINE (MSEv)
3w: SELENOMETHIONINE (MSEw)
3x: SELENOMETHIONINE (MSEx)
3y: SELENOMETHIONINE (MSEy)
3z: SELENOMETHIONINE (MSEz)
4a: SODIUM ION (NAa)
4b: SODIUM ION (NAb)
4c: SODIUM ION (NAc)
4d: SODIUM ION (NAd)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
BNG
3
Ligand/Ion
B-NONYLGLUCOSIDE
2
CIT
3
Ligand/Ion
CITRIC ACID
3
MSE
87
Mod. Amino Acid
SELENOMETHIONINE
4
NA
4
Ligand/Ion
SODIUM ION
[
close Hetero Component info
]
Sites
(10, 10)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
SER D:146 , SER D:150 , ASN D:151 , GLY D:193 , GLY D:199 , SER D:200
BINDING SITE FOR RESIDUE NA D 501
02
AC2
SOFTWARE
PHE D:80
BINDING SITE FOR RESIDUE BNG D 502
03
AC3
SOFTWARE
SER B:150 , ASN B:151 , THR B:152 , SER B:200 , ASN B:378 , THR B:379
BINDING SITE FOR RESIDUE CIT B 501
04
AC4
SOFTWARE
SER B:146 , ILE B:149 , SER B:150 , ASN B:151 , GLY B:199 , SER B:200
BINDING SITE FOR RESIDUE NA B 502
05
AC5
SOFTWARE
HIS B:43 , PHE B:80
BINDING SITE FOR RESIDUE BNG B 503
06
AC6
SOFTWARE
SER A:150 , ASN A:151 , THR A:152 , SER A:200 , PRO A:201 , ASN A:378 , THR A:379 , THR A:421 , PRO A:422
BINDING SITE FOR RESIDUE CIT A 501
07
AC7
SOFTWARE
SER A:146 , SER A:150 , ASN A:151 , GLY A:199 , SER A:200
BINDING SITE FOR RESIDUE NA A 502
08
AC8
SOFTWARE
SER C:150 , ASN C:151 , THR C:152 , VAL C:322 , SER C:377 , ASN C:378 , THR C:379 , THR C:421
BINDING SITE FOR RESIDUE CIT C 501
09
AC9
SOFTWARE
SER C:146 , SER C:150 , ASN C:151 , GLY C:199
BINDING SITE FOR RESIDUE NA C 502
10
BC1
SOFTWARE
ASN C:44 , PHE C:80
BINDING SITE FOR RESIDUE BNG C 503
[
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
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Sorry, no Info available
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PROSITE Patterns/Profiles
(0, 0)
Info
All PROSITE Patterns/Profiles
;
View:
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Label:
End label:
Sorry, no Info available
[
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Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(0, 0)
Info
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Sorry, no Info available
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CATH Domains
(0, 0)
Info
all CATH domains
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Label:
Sorry, no Info available
[
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Pfam Domains
(0, 0)
Info
all PFAM domains
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Label:
Sorry, no Info available
[
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Atom Selection
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Protein & NOT Site
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Chain A
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Chain C
Chain D
Asymmetric Unit 1
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Miscellaneous
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Example Commands
Example Command
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select :A, :C
select chains 'A' and 'C'
select [ALA]:A
select all 'ALA' residues (Alanines) in chain 'A'
select 5-10
select residue range 5 to 10 in all chains
select 5-10:A
select residue range 5 to 10 in chain 'A'
select protein & not helix & not sheet
select non-helix/non-sheet protein parts
set fontsize 20
set label size to 20 (allowed range: 1-58)
ssbonds 100
show SS bonds with a radius of 100 units (=0.4Å)
wireframe 100
show bonds with a radius of 100 units (=0.4Å)
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Note:
In this "Basic Interface" any change in the selection of a pulldown menu automatically triggers an action (one-step mechanism).
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In this "Advanced Interface" any change in the selection of a pulldown menu only sets the target for the corresponding control buttons (two-step mechanism).
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Show PDB file:
Asym.Unit (556 KB)
Header - Asym.Unit
Biol.Unit 1 (273 KB)
Header - Biol.Unit 1
Biol.Unit 2 (270 KB)
Header - Biol.Unit 2
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