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4ESV
Asym. Unit
Info
Asym.Unit (1.7 MB)
Biol.Unit 1 (859 KB)
Biol.Unit 2 (853 KB)
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(1)
Title
:
A NEW TWIST ON THE TRANSLOCATION MECHANISM OF HELICASES FROM THE STRUCTURE OF DNAB WITH ITS SUBSTRATES
Authors
:
O. Itsathitphaisarn, R. A. Wing, W. K. Eliason, J. Wang, T. A. Steitz
Date
:
23 Apr 12 (Deposition) - 24 Oct 12 (Release) - 24 Oct 12 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
3.20
Chains
:
Asym. Unit : A,B,C,D,E,F,G,H,I,J,K,L,V,W
Biol. Unit 1: A,B,C,D,E,F,V (1x)
Biol. Unit 2: G,H,I,J,K,L,W (1x)
Keywords
:
Reca Fold, Helicase, Hydrolase-Dna Complex
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
O. Itsathitphaisarn, R. A. Wing, W. K. Eliason, J. Wang, T. A. Steitz
The Hexameric Helicase Dnab Adopts A Nonplanar Conformation During Translocation.
Cell(Cambridge, Mass. ) V. 151 267 2012
[
close entry info
]
Hetero Components
(4, 38)
Info
All Hetero Components
1a: TETRAFLUOROALUMINATE ION (ALFa)
1b: TETRAFLUOROALUMINATE ION (ALFb)
1c: TETRAFLUOROALUMINATE ION (ALFc)
1d: TETRAFLUOROALUMINATE ION (ALFd)
1e: TETRAFLUOROALUMINATE ION (ALFe)
1f: TETRAFLUOROALUMINATE ION (ALFf)
1g: TETRAFLUOROALUMINATE ION (ALFg)
1h: TETRAFLUOROALUMINATE ION (ALFh)
1i: TETRAFLUOROALUMINATE ION (ALFi)
1j: TETRAFLUOROALUMINATE ION (ALFj)
2a: CALCIUM ION (CAa)
2b: CALCIUM ION (CAb)
2c: CALCIUM ION (CAc)
2d: CALCIUM ION (CAd)
2e: CALCIUM ION (CAe)
2f: CALCIUM ION (CAf)
2g: CALCIUM ION (CAg)
2h: CALCIUM ION (CAh)
2i: CALCIUM ION (CAi)
2j: CALCIUM ION (CAj)
2k: CALCIUM ION (CAk)
2l: CALCIUM ION (CAl)
2m: CALCIUM ION (CAm)
2n: CALCIUM ION (CAn)
3a: GUANOSINE-5'-DIPHOSPHATE (GDPa)
3b: GUANOSINE-5'-DIPHOSPHATE (GDPb)
3c: GUANOSINE-5'-DIPHOSPHATE (GDPc)
3d: GUANOSINE-5'-DIPHOSPHATE (GDPd)
3e: GUANOSINE-5'-DIPHOSPHATE (GDPe)
3f: GUANOSINE-5'-DIPHOSPHATE (GDPf)
3g: GUANOSINE-5'-DIPHOSPHATE (GDPg)
3h: GUANOSINE-5'-DIPHOSPHATE (GDPh)
3i: GUANOSINE-5'-DIPHOSPHATE (GDPi)
3j: GUANOSINE-5'-DIPHOSPHATE (GDPj)
4a: 2-(N-MORPHOLINO)-ETHANESULFONIC AC... (MESa)
4b: 2-(N-MORPHOLINO)-ETHANESULFONIC AC... (MESb)
4c: 2-(N-MORPHOLINO)-ETHANESULFONIC AC... (MESc)
4d: 2-(N-MORPHOLINO)-ETHANESULFONIC AC... (MESd)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
ALF
10
Ligand/Ion
TETRAFLUOROALUMINATE ION
2
CA
14
Ligand/Ion
CALCIUM ION
3
GDP
10
Ligand/Ion
GUANOSINE-5'-DIPHOSPHATE
4
MES
4
Ligand/Ion
2-(N-MORPHOLINO)-ETHANESULFONIC ACID
[
close Hetero Component info
]
Sites
(35, 35)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
19: CC1 (SOFTWARE)
20: CC2 (SOFTWARE)
21: CC3 (SOFTWARE)
22: CC4 (SOFTWARE)
23: CC5 (SOFTWARE)
24: CC6 (SOFTWARE)
25: CC7 (SOFTWARE)
26: CC8 (SOFTWARE)
27: CC9 (SOFTWARE)
28: DC1 (SOFTWARE)
29: DC2 (SOFTWARE)
30: DC3 (SOFTWARE)
31: DC4 (SOFTWARE)
32: DC5 (SOFTWARE)
33: DC6 (SOFTWARE)
34: DC7 (SOFTWARE)
35: DC8 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
SER H:364 , ARG I:365 , GLN I:369 , DT W:12
BINDING SITE FOR RESIDUE MES W 101
02
AC2
SOFTWARE
SER A:213 , VAL A:214 , GLY A:215 , LYS A:216 , THR A:217 , ALA A:218 , ARG A:250 , ALA A:260 , GLN A:261 , PHE A:431 , LYS A:433 , CA A:503 , ALF A:504 , CA A:506 , GLN F:419 , ASN F:421 , GLY F:422
BINDING SITE FOR RESIDUE GDP A 502
03
AC3
SOFTWARE
THR A:217 , GLU A:241 , ASP A:320 , GDP A:502 , ALF A:504
BINDING SITE FOR RESIDUE CA A 503
04
AC4
SOFTWARE
PRO A:212 , SER A:213 , LYS A:216 , GLU A:241 , GLN A:362 , GDP A:502 , CA A:503 , LYS F:418 , ARG F:420
BINDING SITE FOR RESIDUE ALF A 504
05
AC5
SOFTWARE
SER A:378
BINDING SITE FOR RESIDUE CA A 505
06
AC6
SOFTWARE
SER A:213 , GDP A:502 , VAL F:424
BINDING SITE FOR RESIDUE CA A 506
07
AC7
SOFTWARE
GLU A:111 , ASP A:391
BINDING SITE FOR RESIDUE CA A 507
08
AC8
SOFTWARE
GLN B:419 , ASN B:421 , GLY B:422 , PRO B:423 , SER C:213 , VAL C:214 , GLY C:215 , LYS C:216 , THR C:217 , ALA C:218 , ARG C:250 , ALA C:260 , LYS C:433 , GLU C:434 , CA C:502 , ALF C:503
BINDING SITE FOR RESIDUE GDP C 501
09
AC9
SOFTWARE
THR C:217 , GLU C:241 , ASP C:320 , GDP C:501 , ALF C:503
BINDING SITE FOR RESIDUE CA C 502
10
BC1
SOFTWARE
LYS B:418 , ARG B:420 , PRO C:212 , SER C:213 , LYS C:216 , GLU C:241 , GLN C:362 , GDP C:501 , CA C:502
BINDING SITE FOR RESIDUE ALF C 503
11
BC2
SOFTWARE
GLN C:388 , LYS C:418 , ARG C:420 , LYS D:216 , GLU D:241 , GLN D:362 , GDP D:501 , CA D:502
BINDING SITE FOR RESIDUE ALF C 504
12
BC3
SOFTWARE
SER C:35 , GLU C:36 , ILE C:37 , ILE C:39 , ASP C:42 , ARG C:117 , LYS C:154 , HIS C:155
BINDING SITE FOR RESIDUE MES C 505
13
BC4
SOFTWARE
GLN C:419 , ASN C:421 , GLY C:422 , ALF C:504 , SER D:213 , GLY D:215 , LYS D:216 , THR D:217 , ALA D:218 , ARG D:250 , ALA D:260 , GLN D:261 , ARG D:264 , ARG D:398 , ASN D:436 , CA D:502 , HOH D:601
BINDING SITE FOR RESIDUE GDP D 501
14
BC5
SOFTWARE
ALF C:504 , THR D:217 , GLU D:241 , MET D:242 , GDP D:501
BINDING SITE FOR RESIDUE CA D 502
15
BC6
SOFTWARE
LYS D:418 , ARG D:420 , PRO E:212 , LYS E:216 , GLU E:241 , GLN E:362 , GDP E:501 , CA E:502
BINDING SITE FOR RESIDUE ALF D 503
16
BC7
SOFTWARE
ASN D:285 , GLU G:135
BINDING SITE FOR RESIDUE CA D 504
17
BC8
SOFTWARE
GLN D:419 , ASN D:421 , GLY D:422 , PRO D:423 , ALF D:503 , SER E:213 , VAL E:214 , GLY E:215 , LYS E:216 , THR E:217 , ALA E:218 , MET E:242 , ARG E:250 , ALA E:260 , GLN E:261 , ARG E:264 , PHE E:431 , LYS E:433 , ASN E:436 , CA E:502
BINDING SITE FOR RESIDUE GDP E 501
18
BC9
SOFTWARE
ALF D:503 , THR E:217 , GLU E:241 , MET E:242 , ASP E:320 , GDP E:501
BINDING SITE FOR RESIDUE CA E 502
19
CC1
SOFTWARE
LYS E:418 , ARG E:420 , PRO F:212 , SER F:213 , LYS F:216 , GLU F:241 , GLN F:362 , GDP F:501 , CA F:502
BINDING SITE FOR RESIDUE ALF E 503
20
CC2
SOFTWARE
SER E:13 , LYS E:112 , ARG E:116 , GLU F:133
BINDING SITE FOR RESIDUE MES E 504
21
CC3
SOFTWARE
GLN E:419 , ASN E:421 , GLY E:422 , ALF E:503 , SER F:213 , VAL F:214 , GLY F:215 , LYS F:216 , THR F:217 , ALA F:218 , MET F:242 , ARG F:250 , GLN F:261 , ARG F:398 , LYS F:433 , CA F:502
BINDING SITE FOR RESIDUE GDP F 501
22
CC4
SOFTWARE
ALF E:503 , THR F:217 , GLU F:241 , MET F:242 , ASP F:320 , GDP F:501
BINDING SITE FOR RESIDUE CA F 502
23
CC5
SOFTWARE
SER G:213 , VAL G:214 , GLY G:215 , LYS G:216 , THR G:217 , ALA G:218 , ARG G:250 , GLN G:261 , LYS G:433 , ASN G:436 , ALF G:502 , GLN L:419 , GLY L:422 , PRO L:423 , VAL L:424
BINDING SITE FOR RESIDUE GDP G 501
24
CC6
SOFTWARE
LYS G:216 , THR G:217 , GLU G:241 , GLN G:362 , GDP G:501 , GLN L:388 , LYS L:418 , ARG L:420
BINDING SITE FOR RESIDUE ALF G 502
25
CC7
SOFTWARE
GLN H:419 , ASN H:421 , GLY H:422 , PRO H:423 , VAL H:424 , SER I:213 , GLY I:215 , LYS I:216 , THR I:217 , ALA I:218 , ARG I:250 , ALA I:260 , GLN I:261 , LYS I:433 , CA I:502 , ALF I:503
BINDING SITE FOR RESIDUE GDP I 501
26
CC8
SOFTWARE
THR I:217 , GLU I:241 , MET I:242 , GDP I:501 , ALF I:503
BINDING SITE FOR RESIDUE CA I 502
27
CC9
SOFTWARE
GLN H:388 , LYS H:418 , ARG H:420 , LYS I:216 , GLU I:241 , GLN I:362 , GDP I:501 , CA I:502
BINDING SITE FOR RESIDUE ALF I 503
28
DC1
SOFTWARE
GLY I:129 , GLU I:133
BINDING SITE FOR RESIDUE MES I 504
29
DC2
SOFTWARE
GLN I:419 , ASN I:421 , GLY I:422 , VAL I:424 , SER J:213 , GLY J:215 , LYS J:216 , THR J:217 , ALA J:218 , ARG J:250 , ALA J:260 , GLN J:261 , LYS J:433 , ALF J:502
BINDING SITE FOR RESIDUE GDP J 501
30
DC3
SOFTWARE
LYS I:418 , ARG I:420 , LYS J:216 , THR J:217 , GLU J:241 , MET J:242 , GLN J:362 , GDP J:501
BINDING SITE FOR RESIDUE ALF J 502
31
DC4
SOFTWARE
GLN J:419 , ASN J:421 , GLY J:422 , VAL J:424 , SER K:213 , GLY K:215 , LYS K:216 , THR K:217 , ALA K:218 , ARG K:250 , ALA K:260 , LYS K:433 , GLU K:434 , ASN K:436 , ALF K:502
BINDING SITE FOR RESIDUE GDP K 501
32
DC5
SOFTWARE
GLN J:388 , LYS J:418 , ARG J:420 , PRO K:212 , SER K:213 , LYS K:216 , THR K:217 , GLU K:241 , GDP K:501
BINDING SITE FOR RESIDUE ALF K 502
33
DC6
SOFTWARE
GLN K:419 , GLY K:422 , PRO K:423 , VAL K:424 , SER L:213 , GLY L:215 , LYS L:216 , THR L:217 , ALA L:218 , ARG L:250 , GLN L:261 , LYS L:433 , ALF L:502 , CA L:503
BINDING SITE FOR RESIDUE GDP L 501
34
DC7
SOFTWARE
GLN K:388 , LYS K:418 , ARG K:420 , PRO L:212 , LYS L:216 , GLU L:241 , GLN L:362 , GDP L:501 , CA L:503
BINDING SITE FOR RESIDUE ALF L 502
35
DC8
SOFTWARE
THR L:217 , ASP L:320 , GDP L:501 , ALF L:502
BINDING SITE FOR RESIDUE CA L 503
[
close Site info
]
SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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PROSITE Patterns/Profiles
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End label:
Sorry, no Info available
[
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Exons
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
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CATH Domains
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Pfam Domains
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select residue range 5 to 10 in chain 'A'
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Asym.Unit (1.7 MB)
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