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4ENV
Asym. Unit
Info
Asym.Unit (969 KB)
Biol.Unit 1 (957 KB)
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(1)
Title
:
STRUCTURE OF THE S234I VARIANT OF E. COLI KATE
Authors
:
P. C. Loewen, V. Jha
Date
:
13 Apr 12 (Deposition) - 02 May 12 (Release) - 27 Feb 13 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.70
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A,B,C,D (1x)
Keywords
:
Catalase Fold, Kate, S234D Variant, Oxidoreductase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
V. Jha, P. Chelikani, X. Carpena, I. Fita, P. C. Loewen
Influence Of Main Channel Structure On H(2)O(2) Access To The Heme Cavity Of Catalase Kate Of Escherichia Coli.
Arch. Biochem. Biophys. V. 526 54 2012
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Hetero Components
(2, 8)
Info
All Hetero Components
1a: CIS-HEME D HYDROXYCHLORIN GAMMA-SP... (HDDa)
1b: CIS-HEME D HYDROXYCHLORIN GAMMA-SP... (HDDb)
1c: CIS-HEME D HYDROXYCHLORIN GAMMA-SP... (HDDc)
1d: CIS-HEME D HYDROXYCHLORIN GAMMA-SP... (HDDd)
2a: PROTOPORPHYRIN IX CONTAINING FE (HEMa)
2b: PROTOPORPHYRIN IX CONTAINING FE (HEMb)
2c: PROTOPORPHYRIN IX CONTAINING FE (HEMc)
2d: PROTOPORPHYRIN IX CONTAINING FE (HEMd)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
HDD
4
Ligand/Ion
CIS-HEME D HYDROXYCHLORIN GAMMA-SPIROLACTONE
2
HEM
4
Ligand/Ion
PROTOPORPHYRIN IX CONTAINING FE
[
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Sites
(8, 8)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
5: AC5 (SOFTWARE)
6: AC6 (SOFTWARE)
7: AC7 (SOFTWARE)
8: AC8 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
ARG A:125 , VAL A:127 , HIS A:128 , ARG A:165 , GLY A:184 , VAL A:199 , GLY A:200 , ASN A:201 , PHE A:206 , PHE A:214 , ILE A:274 , PHE A:391 , LEU A:407 , GLY A:410 , ARG A:411 , SER A:414 , TYR A:415 , THR A:418 , GLN A:419 , HOH A:922 , HOH A:968 , HOH A:995 , HOH A:1527
BINDING SITE FOR RESIDUE HDD A 801
2
AC2
SOFTWARE
ARG A:125 , VAL A:127 , HIS A:128 , ARG A:165 , GLY A:184 , ALA A:186 , VAL A:199 , GLY A:200 , ASN A:201 , PHE A:206 , PHE A:214 , ILE A:274 , HIS A:275 , PHE A:391 , LEU A:407 , ARG A:411 , SER A:414 , TYR A:415 , GLN A:419 , ARG A:422 , HOH A:922 , HOH A:968 , HOH A:995 , HOH A:1527 , ASP D:118
BINDING SITE FOR RESIDUE HEM A 802
3
AC3
SOFTWARE
ARG B:125 , VAL B:127 , HIS B:128 , ARG B:165 , GLY B:184 , VAL B:199 , GLY B:200 , ASN B:201 , PHE B:214 , ILE B:274 , HIS B:275 , PHE B:391 , LEU B:407 , GLY B:410 , ARG B:411 , SER B:414 , TYR B:415 , THR B:418 , GLN B:419 , ARG B:422 , HOH B:970 , HOH B:1015 , HOH B:1042 , HOH B:1500
BINDING SITE FOR RESIDUE HDD B 801
4
AC4
SOFTWARE
ARG B:125 , VAL B:127 , HIS B:128 , ARG B:165 , GLY B:184 , VAL B:199 , GLY B:200 , ASN B:201 , PHE B:206 , PHE B:214 , ILE B:274 , PHE B:391 , LEU B:407 , ARG B:411 , SER B:414 , TYR B:415 , THR B:418 , GLN B:419 , ARG B:422 , HOH B:970 , HOH B:1015 , HOH B:1042 , HOH B:1500 , ASP C:118
BINDING SITE FOR RESIDUE HEM B 802
5
AC5
SOFTWARE
ARG C:125 , VAL C:127 , HIS C:128 , ARG C:165 , GLY C:184 , VAL C:199 , GLY C:200 , ASN C:201 , PHE C:214 , ILE C:274 , HIS C:275 , PHE C:391 , LEU C:407 , ARG C:411 , SER C:414 , TYR C:415 , THR C:418 , GLN C:419 , ARG C:422 , HOH C:1018 , HOH C:1062 , HOH C:1091 , HOH C:1517
BINDING SITE FOR RESIDUE HDD C 801
6
AC6
SOFTWARE
ASP B:118 , ARG C:125 , VAL C:127 , HIS C:128 , ARG C:165 , GLY C:184 , VAL C:199 , GLY C:200 , ASN C:201 , PHE C:206 , ALA C:211 , PHE C:214 , ILE C:274 , HIS C:275 , PHE C:391 , LEU C:407 , ARG C:411 , SER C:414 , TYR C:415 , THR C:418 , GLN C:419 , ARG C:422 , HOH C:1018 , HOH C:1062 , HOH C:1091 , HOH C:1517
BINDING SITE FOR RESIDUE HEM C 802
7
AC7
SOFTWARE
ARG D:125 , VAL D:127 , HIS D:128 , ARG D:165 , GLY D:184 , VAL D:199 , GLY D:200 , ASN D:201 , PHE D:214 , HIS D:275 , PHE D:391 , LEU D:407 , GLY D:410 , ARG D:411 , SER D:414 , TYR D:415 , THR D:418 , GLN D:419 , HOH D:1069 , HOH D:1114 , HOH D:1141
BINDING SITE FOR RESIDUE HDD D 801
8
AC8
SOFTWARE
ASP A:118 , ARG D:125 , VAL D:127 , HIS D:128 , ARG D:165 , GLY D:184 , VAL D:199 , GLY D:200 , ASN D:201 , PHE D:206 , PHE D:214 , ILE D:274 , PHE D:391 , LEU D:407 , ARG D:411 , SER D:414 , TYR D:415 , THR D:418 , GLN D:419 , ARG D:422 , HOH D:1069 , HOH D:1114 , HOH D:1141
BINDING SITE FOR RESIDUE HEM D 802
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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PROSITE Patterns/Profiles
(0, 0)
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;
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Exons
(0, 0)
Info
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(2, 8)
Info
All SCOP Domains
1a: SCOP_d4enva2 (A:598-753)
1b: SCOP_d4envb2 (B:598-753)
1c: SCOP_d4envc2 (C:598-753)
1d: SCOP_d4envd2 (D:598-753)
2a: SCOP_d4enva1 (A:28-597)
2b: SCOP_d4envb1 (B:28-597)
2c: SCOP_d4envc1 (C:28-597)
2d: SCOP_d4envd1 (D:28-597)
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Protein Domains
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(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
Flavodoxin-like
(1057)
Superfamily
:
Class I glutamine amidotransferase-like
(173)
Family
:
automated matches
(40)
Protein domain
:
automated matches
(40)
Escherichia coli K-12 [TaxId: 83333]
(19)
1a
d4enva2
A:598-753
1b
d4envb2
B:598-753
1c
d4envc2
C:598-753
1d
d4envd2
D:598-753
Class
:
Multi-domain proteins (alpha and beta)
(2421)
Fold
:
Heme-dependent catalase-like
(82)
Superfamily
:
Heme-dependent catalase-like
(82)
Family
:
Heme-dependent catalases
(80)
Protein domain
:
automated matches
(32)
Escherichia coli K-12 [TaxId: 83333]
(19)
2a
d4enva1
A:28-597
2b
d4envb1
B:28-597
2c
d4envc1
C:28-597
2d
d4envd1
D:28-597
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CATH Domains
(0, 0)
Info
all CATH domains
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Pfam Domains
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Sorry, no Info available
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Asymmetric Unit 1
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select :A, :C
select chains 'A' and 'C'
select [ALA]:A
select all 'ALA' residues (Alanines) in chain 'A'
select 5-10
select residue range 5 to 10 in all chains
select 5-10:A
select residue range 5 to 10 in chain 'A'
select protein & not helix & not sheet
select non-helix/non-sheet protein parts
set fontsize 20
set label size to 20 (allowed range: 1-58)
ssbonds 100
show SS bonds with a radius of 100 units (=0.4Å)
wireframe 100
show bonds with a radius of 100 units (=0.4Å)
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Asym.Unit (969 KB)
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