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4EM9
Biol. Unit 3
Info
Asym.Unit (190 KB)
Biol.Unit 1 (97 KB)
Biol.Unit 2 (90 KB)
Biol.Unit 3 (365 KB)
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(1)
Title
:
HUMAN PPAR GAMMA IN COMPLEX WITH NONANOIC ACIDS
Authors
:
M. V. Liberato, A. S. Nascimento, I. Polikarpov
Date
:
11 Apr 12 (Deposition) - 06 Mar 13 (Release) - 06 Mar 13 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.10
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Biol. Unit 3: A,B (2x)
Keywords
:
Nuclear Receptor, Retinoic Acid Receptor, Nucleus, Transcription
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
M. V. Liberato, A. S. Nascimento, S. D. Ayers, J. Z. Lin, A. Cvoro, R. L. Silveira, L. Martinez, P. C. Souza, D. Saidemberg, T. Deng, A. A. Amato, M. Togashi, W. A. Hsueh, K. Phillips, M. S. Palma, F. A. Neves, M. S. Skaf, P. Webb, I. Polikarpov
Medium Chain Fatty Acids Are Selective Peroxisome Proliferator Activated Receptor (Ppar) Gamma Activators And Pan-Ppar Partial Agonists
Plos One V. 7 36297 2012
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Hetero Components
(3, 8)
Info
All Hetero Components
1a: GLYCEROL (GOLa)
1b: GLYCEROL (GOLb)
1c: GLYCEROL (GOLc)
2a: NONANOIC ACID (KNAa)
2b: NONANOIC ACID (KNAb)
2c: NONANOIC ACID (KNAc)
2d: NONANOIC ACID (KNAd)
3a: 3,3',3''-PHOSPHANETRIYLTRIPROPANOI... (TCEa)
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No.
Name
Count
Type
Full Name
1
GOL
4
Ligand/Ion
GLYCEROL
2
KNA
2
Ligand/Ion
NONANOIC ACID
3
TCE
2
Ligand/Ion
3,3',3''-PHOSPHANETRIYLTRIPROPANOIC ACID
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Sites
(8, 8)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
5: AC5 (SOFTWARE)
6: AC6 (SOFTWARE)
7: AC7 (SOFTWARE)
8: AC8 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
CYS A:285 , ARG A:288 , SER A:289 , ILE A:326 , LEU A:333 , MET A:364 , KNA A:503 , GOL A:504
BINDING SITE FOR RESIDUE KNA A 501
2
AC2
SOFTWARE
PHE A:282 , CYS A:285 , SER A:289 , HIS A:323 , PHE A:363 , HIS A:449 , TYR A:473
BINDING SITE FOR RESIDUE KNA A 502
3
AC3
SOFTWARE
ARG A:288 , LEU A:340 , ILE A:341 , SER A:342 , KNA A:501 , HOH A:733
BINDING SITE FOR RESIDUE KNA A 503
4
AC4
SOFTWARE
PHE A:226 , LEU A:228 , ARG A:288 , GLU A:295 , MET A:329 , LEU A:333 , KNA A:501 , HOH A:637
BINDING SITE FOR RESIDUE GOL A 504
5
AC5
SOFTWARE
CYS B:285 , ARG B:288 , SER B:289 , ALA B:292 , ILE B:326 , TYR B:327 , MET B:364 , HIS B:449 , GOL B:504
BINDING SITE FOR RESIDUE KNA B 501
6
AC6
SOFTWARE
GLU B:259 , PHE B:264 , HIS B:266 , CYS B:285 , ILE B:341 , SER B:342 , HOH B:664
BINDING SITE FOR RESIDUE TCE B 502
7
AC7
SOFTWARE
ASN B:312
BINDING SITE FOR RESIDUE GOL B 503
8
AC8
SOFTWARE
PRO B:227 , LEU B:228 , ARG B:288 , GLU B:295 , MET B:329 , LEU B:333 , KNA B:501 , HOH B:613
BINDING SITE FOR RESIDUE GOL B 504
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SAPs(SNPs)/Variants
(0, 0)
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(mutated residues are only available for the asymmetric unit)
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PROSITE Patterns/Profiles
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Exons
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(1, 2)
Info
All SCOP Domains
1a: SCOP_d4em9a_ (A:)
1b: SCOP_d4em9b_ (B:)
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Protein Domains
(
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(
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Organisms
(
)
(
)
Class
:
All alpha proteins
(14657)
Fold
:
Nuclear receptor ligand-binding domain
(609)
Superfamily
:
Nuclear receptor ligand-binding domain
(609)
Family
:
Nuclear receptor ligand-binding domain
(598)
Protein domain
:
Peroxisome proliferator activated receptor gamma, PPAR-gamma
(83)
Human (Homo sapiens) [TaxId: 9606]
(83)
1a
d4em9a_
A:
1b
d4em9b_
B:
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CATH Domains
(0, 0)
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Pfam Domains
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Show PDB file:
Asym.Unit (190 KB)
Header - Asym.Unit
Biol.Unit 1 (97 KB)
Header - Biol.Unit 1
Biol.Unit 2 (90 KB)
Header - Biol.Unit 2
Biol.Unit 3 (365 KB)
Header - Biol.Unit 3
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