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4EM9
Asym. Unit
Info
Asym.Unit (190 KB)
Biol.Unit 1 (97 KB)
Biol.Unit 2 (90 KB)
Biol.Unit 3 (365 KB)
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(1)
Title
:
HUMAN PPAR GAMMA IN COMPLEX WITH NONANOIC ACIDS
Authors
:
M. V. Liberato, A. S. Nascimento, I. Polikarpov
Date
:
11 Apr 12 (Deposition) - 06 Mar 13 (Release) - 06 Mar 13 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.10
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Biol. Unit 3: A,B (2x)
Keywords
:
Nuclear Receptor, Retinoic Acid Receptor, Nucleus, Transcription
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
M. V. Liberato, A. S. Nascimento, S. D. Ayers, J. Z. Lin, A. Cvoro, R. L. Silveira, L. Martinez, P. C. Souza, D. Saidemberg, T. Deng, A. A. Amato, M. Togashi, W. A. Hsueh, K. Phillips, M. S. Palma, F. A. Neves, M. S. Skaf, P. Webb, I. Polikarpov
Medium Chain Fatty Acids Are Selective Peroxisome Proliferator Activated Receptor (Ppar) Gamma Activators And Pan-Ppar Partial Agonists
Plos One V. 7 36297 2012
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Hetero Components
(3, 8)
Info
All Hetero Components
1a: GLYCEROL (GOLa)
1b: GLYCEROL (GOLb)
1c: GLYCEROL (GOLc)
2a: NONANOIC ACID (KNAa)
2b: NONANOIC ACID (KNAb)
2c: NONANOIC ACID (KNAc)
2d: NONANOIC ACID (KNAd)
3a: 3,3',3''-PHOSPHANETRIYLTRIPROPANOI... (TCEa)
View:
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Label:
No.
Name
Count
Type
Full Name
1
GOL
3
Ligand/Ion
GLYCEROL
2
KNA
4
Ligand/Ion
NONANOIC ACID
3
TCE
1
Ligand/Ion
3,3',3''-PHOSPHANETRIYLTRIPROPANOIC ACID
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Sites
(8, 8)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
5: AC5 (SOFTWARE)
6: AC6 (SOFTWARE)
7: AC7 (SOFTWARE)
8: AC8 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
CYS A:285 , ARG A:288 , SER A:289 , ILE A:326 , LEU A:333 , MET A:364 , KNA A:503 , GOL A:504
BINDING SITE FOR RESIDUE KNA A 501
2
AC2
SOFTWARE
PHE A:282 , CYS A:285 , SER A:289 , HIS A:323 , PHE A:363 , HIS A:449 , TYR A:473
BINDING SITE FOR RESIDUE KNA A 502
3
AC3
SOFTWARE
ARG A:288 , LEU A:340 , ILE A:341 , SER A:342 , KNA A:501 , HOH A:733
BINDING SITE FOR RESIDUE KNA A 503
4
AC4
SOFTWARE
PHE A:226 , LEU A:228 , ARG A:288 , GLU A:295 , MET A:329 , LEU A:333 , KNA A:501 , HOH A:637
BINDING SITE FOR RESIDUE GOL A 504
5
AC5
SOFTWARE
CYS B:285 , ARG B:288 , SER B:289 , ALA B:292 , ILE B:326 , TYR B:327 , MET B:364 , HIS B:449 , GOL B:504
BINDING SITE FOR RESIDUE KNA B 501
6
AC6
SOFTWARE
GLU B:259 , PHE B:264 , HIS B:266 , CYS B:285 , ILE B:341 , SER B:342 , HOH B:664
BINDING SITE FOR RESIDUE TCE B 502
7
AC7
SOFTWARE
ASN B:312
BINDING SITE FOR RESIDUE GOL B 503
8
AC8
SOFTWARE
PRO B:227 , LEU B:228 , ARG B:288 , GLU B:295 , MET B:329 , LEU B:333 , KNA B:501 , HOH B:613
BINDING SITE FOR RESIDUE GOL B 504
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SAPs(SNPs)/Variants
(0, 0)
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(mutated residues are not available)
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PROSITE Patterns/Profiles
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Exons
(0, 0)
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 2)
Info
All SCOP Domains
1a: SCOP_d4em9a_ (A:)
1b: SCOP_d4em9b_ (B:)
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Protein Domains
(
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(
)
Organisms
(
)
(
)
Class
:
All alpha proteins
(14657)
Fold
:
Nuclear receptor ligand-binding domain
(609)
Superfamily
:
Nuclear receptor ligand-binding domain
(609)
Family
:
Nuclear receptor ligand-binding domain
(598)
Protein domain
:
Peroxisome proliferator activated receptor gamma, PPAR-gamma
(83)
Human (Homo sapiens) [TaxId: 9606]
(83)
1a
d4em9a_
A:
1b
d4em9b_
B:
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CATH Domains
(0, 0)
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all CATH domains
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Pfam Domains
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Asymmetric Unit 1
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select residue range 5 to 10 in chain 'A'
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Show PDB file:
Asym.Unit (190 KB)
Header - Asym.Unit
Biol.Unit 1 (97 KB)
Header - Biol.Unit 1
Biol.Unit 2 (90 KB)
Header - Biol.Unit 2
Biol.Unit 3 (365 KB)
Header - Biol.Unit 3
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