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4EGA
Asym. Unit
Info
Asym.Unit (368 KB)
Biol.Unit 1 (182 KB)
Biol.Unit 2 (183 KB)
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(1)
Title
:
TRYPANOSOMA BRUCEI METHIONYL-TRNA SYNTHETASE IN COMPLEX WITH INHIBITOR CHEM 1320
Authors
:
C. Y. Koh, J. E. Kim, S. Shibata, E. Fan, C. L. M. J. Verlinde, W. G. J. Hol
Date
:
30 Mar 12 (Deposition) - 12 Sep 12 (Release) - 31 Oct 12 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.70
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Keywords
:
Aminoacyl-Trna Synthetase, Aars, Metrs, Parasite, Ligase, Protein- Inhibitor Complex, Rossmann-Fold, Translation, Nucleotide Binding, , Rossmann Fold, Trna Binding, Atp Binding, Ligase-Ligase Inhibitor Complex
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
C. Y. Koh, J. E. Kim, S. Shibata, R. M. Ranade, M. Yu, J. Liu, J. R. Gillespie, F. S. Buckner, C. L. Verlinde, E. Fan, W. G. Hol
Distinct States Of Methionyl-Trna Synthetase Indicate Inhibitor Binding By Conformational Selection.
Structure V. 20 1681 2012
[
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Hetero Components
(6, 31)
Info
All Hetero Components
1a: 2-({3-[(3,5-DIBROMO-2-METHOXYBENZY... (0P8a)
2a: S-(DIMETHYLARSENIC)CYSTEINE (CASa)
2b: S-(DIMETHYLARSENIC)CYSTEINE (CASb)
2c: S-(DIMETHYLARSENIC)CYSTEINE (CASc)
2d: S-(DIMETHYLARSENIC)CYSTEINE (CASd)
3a: DIMETHYL SULFOXIDE (DMSa)
3b: DIMETHYL SULFOXIDE (DMSb)
3c: DIMETHYL SULFOXIDE (DMSc)
3d: DIMETHYL SULFOXIDE (DMSd)
3e: DIMETHYL SULFOXIDE (DMSe)
3f: DIMETHYL SULFOXIDE (DMSf)
3g: DIMETHYL SULFOXIDE (DMSg)
4a: GLYCEROL (GOLa)
4b: GLYCEROL (GOLb)
4c: GLYCEROL (GOLc)
4d: GLYCEROL (GOLd)
4e: GLYCEROL (GOLe)
4f: GLYCEROL (GOLf)
4g: GLYCEROL (GOLg)
4h: GLYCEROL (GOLh)
4i: GLYCEROL (GOLi)
4j: GLYCEROL (GOLj)
4k: GLYCEROL (GOLk)
4l: GLYCEROL (GOLl)
4m: GLYCEROL (GOLm)
4n: GLYCEROL (GOLn)
4o: GLYCEROL (GOLo)
4p: GLYCEROL (GOLp)
4q: GLYCEROL (GOLq)
5a: METHIONINE (METa)
6a: SULFATE ION (SO4a)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
0P8
1
Ligand/Ion
2-({3-[(3,5-DIBROMO-2-METHOXYBENZYL)AMINO]PROPYL}AMINO)QUINOLIN-4(1H)-ONE
2
CAS
4
Mod. Amino Acid
S-(DIMETHYLARSENIC)CYSTEINE
3
DMS
7
Ligand/Ion
DIMETHYL SULFOXIDE
4
GOL
17
Ligand/Ion
GLYCEROL
5
MET
1
Mod. Amino Acid
METHIONINE
6
SO4
1
Ligand/Ion
SULFATE ION
[
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Sites
(27, 27)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
19: CC1 (SOFTWARE)
20: CC2 (SOFTWARE)
21: CC3 (SOFTWARE)
22: CC4 (SOFTWARE)
23: CC5 (SOFTWARE)
24: CC6 (SOFTWARE)
25: CC7 (SOFTWARE)
26: CC8 (SOFTWARE)
27: CC9 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
ARG A:583 , ARG A:601
BINDING SITE FOR RESIDUE GOL A 801
02
AC2
SOFTWARE
TYR A:261 , LEU A:582 , SER A:585 , PHE A:587 , PRO A:659 , ASP A:660
BINDING SITE FOR RESIDUE GOL A 802
03
AC3
SOFTWARE
ARG A:271 , VAL A:275 , SER A:714 , HOH A:985
BINDING SITE FOR RESIDUE GOL A 803
04
AC4
SOFTWARE
PRO A:731 , GLU A:732 , VAL A:733
BINDING SITE FOR RESIDUE GOL A 804
05
AC5
SOFTWARE
GLY A:573 , TYR A:574 , ASP A:575 , HOH A:941
BINDING SITE FOR RESIDUE GOL A 805
06
AC6
SOFTWARE
VAL A:340 , GLU A:343 , LEU A:344 , LYS A:347 , LEU A:482 , ARG A:486
BINDING SITE FOR RESIDUE GOL A 806
07
AC7
SOFTWARE
TRP A:345 , GLU A:349 , PRO A:464 , GLY A:465
BINDING SITE FOR RESIDUE GOL A 807
08
AC8
SOFTWARE
ASP A:381 , HIS A:395 , VAL A:396
BINDING SITE FOR RESIDUE GOL A 808
09
AC9
SOFTWARE
ASN A:252 , HIS A:256 , LYS A:292 , LYS A:550 , HOH A:957
BINDING SITE FOR RESIDUE GOL A 809
10
BC1
SOFTWARE
LEU A:444 , DMS A:812 , DMS A:813
BINDING SITE FOR RESIDUE DMS A 810
11
BC2
SOFTWARE
LYS A:517 , ASP A:518 , LEU A:520 , LYS A:521 , DMS A:812
BINDING SITE FOR RESIDUE DMS A 811
12
BC3
SOFTWARE
GLU A:435 , ALA A:439 , DMS A:810 , DMS A:811
BINDING SITE FOR RESIDUE DMS A 812
13
BC4
SOFTWARE
PRO A:445 , TYR A:526 , DMS A:810
BINDING SITE FOR RESIDUE DMS A 813
14
BC5
SOFTWARE
ILE A:248 , TYR A:249 , TYR A:250 , ASP A:287 , TRP A:474 , ALA A:477 , TYR A:481 , THR A:549 , LYS A:550 , HOH A:938
BINDING SITE FOR RESIDUE MET A 814
15
BC6
SOFTWARE
GLU A:430 , ASP A:660 , LYS A:663 , GLU B:637 , ASP B:681
BINDING SITE FOR RESIDUE GOL B 801
16
BC7
SOFTWARE
LEU B:482 , ARG B:486 , ASP B:500
BINDING SITE FOR RESIDUE GOL B 802
17
BC8
SOFTWARE
ARG B:583 , ARG B:601
BINDING SITE FOR RESIDUE GOL B 803
18
BC9
SOFTWARE
ARG B:408
BINDING SITE FOR RESIDUE GOL B 804
19
CC1
SOFTWARE
ARG B:271 , ARG B:274 , SER B:714 , LYS B:736
BINDING SITE FOR RESIDUE GOL B 805
20
CC2
SOFTWARE
HIS A:421 , PRO A:424 , ALA B:632 , ALA B:633 , GLU B:693 , ARG B:694 , HOH B:991
BINDING SITE FOR RESIDUE GOL B 806
21
CC3
SOFTWARE
HIS B:289 , TYR B:305 , LYS B:338 , ALA B:460
BINDING SITE FOR RESIDUE GOL B 807
22
CC4
SOFTWARE
GLY B:-4 , GLN B:643 , LYS B:646
BINDING SITE FOR RESIDUE GOL B 808
23
CC5
SOFTWARE
TYR B:324 , ILE B:326
BINDING SITE FOR RESIDUE DMS B 809
24
CC6
SOFTWARE
TYR B:472 , HOH B:963 , HOH B:1005
BINDING SITE FOR RESIDUE DMS B 810
25
CC7
SOFTWARE
TYR B:574 , ASP B:575 , LYS B:720 , HOH B:1039
BINDING SITE FOR RESIDUE DMS B 811
26
CC8
SOFTWARE
TYR B:249 , TYR B:250 , HIS B:259 , 0P8 B:813
BINDING SITE FOR RESIDUE SO4 B 812
27
CC9
SOFTWARE
TYR B:250 , ASP B:287 , HIS B:289 , GLY B:290 , TYR B:472 , VAL B:473 , TRP B:474 , ASP B:476 , TYR B:481 , PHE B:522 , HIS B:523 , SO4 B:812 , HOH B:928 , HOH B:963 , HOH B:992 , HOH B:994 , HOH B:995
BINDING SITE FOR RESIDUE 0P8 B 813
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
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PROSITE Patterns/Profiles
(0, 0)
Info
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;
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Sorry, no Info available
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Exons
(0, 0)
Info
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(2, 4)
Info
All SCOP Domains
1a: SCOP_d4egaa2 (A:607-768)
1b: SCOP_d4egab2 (B:607-767)
2a: SCOP_d4egaa1 (A:238-606)
2b: SCOP_d4egab1 (B:237-606)
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Classes
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Folds
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Protein Domains
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(
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Organisms
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(
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Class
:
All alpha proteins
(14657)
Fold
:
Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases
(48)
Superfamily
:
Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases
(48)
Family
:
automated matches
(18)
Protein domain
:
automated matches
(18)
Trypanosoma brucei [TaxId: 999953]
(5)
1a
d4egaa2
A:607-768
1b
d4egab2
B:607-767
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
Adenine nucleotide alpha hydrolase-like
(440)
Superfamily
:
Nucleotidylyl transferase
(325)
Family
:
automated matches
(67)
Protein domain
:
automated matches
(67)
Trypanosoma brucei [TaxId: 999953]
(5)
2a
d4egaa1
A:238-606
2b
d4egab1
B:237-606
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CATH Domains
(0, 0)
Info
all CATH domains
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Sorry, no Info available
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Pfam Domains
(0, 0)
Info
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Sorry, no Info available
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