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4EG3
Asym. Unit
Info
Asym.Unit (364 KB)
Biol.Unit 1 (181 KB)
Biol.Unit 2 (181 KB)
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(1)
Title
:
TRYPANOSOMA BRUCEI METHIONYL-TRNA SYNTHETASE IN COMPLEX WITH PRODUCT METHIONYL-ADENYLATE
Authors
:
C. Y. Koh, J. E. Kim, S. Shibata, E. Fan, C. L. M. J. Verlinde, W. G. J. Hol
Date
:
30 Mar 12 (Deposition) - 12 Sep 12 (Release) - 31 Oct 12 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.94
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Keywords
:
Aminoacyl-Trna Synthetase, Aars, Metrs, Parasite, Ligase, Protein- Inhibitor Complex, Rossmann-Fold, Translation, Nucleotide Binding, , Rossmann Fold, Trna Binding Atp Binding
(Keyword Search:
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Gene Ontology, PubMed, Web (Google)
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Reference
:
C. Y. Koh, J. E. Kim, S. Shibata, R. M. Ranade, M. Yu, J. Liu, J. R. Gillespie, F. S. Buckner, C. L. Verlinde, E. Fan, W. G. Hol
Distinct States Of Methionyl-Trna Synthetase Indicate Inhibitor Binding By Conformational Selection.
Structure V. 20 1681 2012
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Hetero Components
(3, 15)
Info
All Hetero Components
1a: S-(DIMETHYLARSENIC)CYSTEINE (CASa)
1b: S-(DIMETHYLARSENIC)CYSTEINE (CASb)
2a: GLYCEROL (GOLa)
2b: GLYCEROL (GOLb)
2c: GLYCEROL (GOLc)
2d: GLYCEROL (GOLd)
2e: GLYCEROL (GOLe)
2f: GLYCEROL (GOLf)
2g: GLYCEROL (GOLg)
2h: GLYCEROL (GOLh)
2i: GLYCEROL (GOLi)
2j: GLYCEROL (GOLj)
2k: GLYCEROL (GOLk)
3a: [[(2R,3S,4R,5R)-5-(6-AMINOPURIN-9-... (ME8a)
3b: [[(2R,3S,4R,5R)-5-(6-AMINOPURIN-9-... (ME8b)
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Label:
No.
Name
Count
Type
Full Name
1
CAS
2
Mod. Amino Acid
S-(DIMETHYLARSENIC)CYSTEINE
2
GOL
11
Ligand/Ion
GLYCEROL
3
ME8
2
Ligand/Ion
[[(2R,3S,4R,5R)-5-(6-AMINOPURIN-9-YL)-3,4-DIHYDROXY-OXOLAN-2-YL]METHOXY-HYDROXY-PHOSPHORYL] (2S)-2-AZANYL-4-METHYLSULFANYL-BUTANOATE
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Sites
(13, 13)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
ARG A:583 , ARG A:601
BINDING SITE FOR RESIDUE GOL A 801
02
AC2
SOFTWARE
ARG A:271 , VAL A:275 , SER A:714 , PRO A:718 , HOH A:906
BINDING SITE FOR RESIDUE GOL A 802
03
AC3
SOFTWARE
ASP A:653 , PHE A:741
BINDING SITE FOR RESIDUE GOL A 803
04
AC4
SOFTWARE
TRP A:345 , GLU A:349 , TYR A:405 , VAL A:463 , PRO A:464 , GLY A:465
BINDING SITE FOR RESIDUE GOL A 804
05
AC5
SOFTWARE
PHE A:370 , LEU A:371 , THR A:372 , PRO A:445 , LYS A:521 , TYR A:526
BINDING SITE FOR RESIDUE GOL A 805
06
AC6
SOFTWARE
PRO A:731 , GLU A:732 , GOL A:807
BINDING SITE FOR RESIDUE GOL A 806
07
AC7
SOFTWARE
TYR A:355 , ARG A:408 , GOL A:806
BINDING SITE FOR RESIDUE GOL A 807
08
AC8
SOFTWARE
ILE A:248 , TYR A:249 , TYR A:250 , HIS A:256 , GLY A:258 , HIS A:259 , SER A:262 , ASP A:287 , TRP A:474 , GLY A:516 , ASP A:518 , ILE A:519 , HIS A:523 , HIS A:545 , GLY A:546 , TRP A:547 , TRP A:548 , LYS A:554
BINDING SITE FOR RESIDUE ME8 A 808
09
AC9
SOFTWARE
ARG B:583 , ARG B:601
BINDING SITE FOR RESIDUE GOL B 801
10
BC1
SOFTWARE
GLU B:343 , LYS B:347 , ARG B:486
BINDING SITE FOR RESIDUE GOL B 802
11
BC2
SOFTWARE
HIS B:289 , THR B:333 , LYS B:338 , TRP B:459
BINDING SITE FOR RESIDUE GOL B 803
12
BC3
SOFTWARE
ARG B:719
BINDING SITE FOR RESIDUE GOL B 804
13
BC4
SOFTWARE
PRO B:247 , ILE B:248 , TYR B:249 , TYR B:250 , HIS B:256 , GLY B:258 , HIS B:259 , SER B:262 , ASP B:287 , TRP B:474 , ALA B:477 , TYR B:481 , GLY B:516 , ASP B:518 , ILE B:519 , HIS B:545 , GLY B:546 , TRP B:547 , TRP B:548 , HOH B:960
BINDING SITE FOR RESIDUE ME8 B 805
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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PROSITE Patterns/Profiles
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Exons
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(2, 2)
Info
All SCOP Domains
1a: SCOP_d4eg3b2 (B:607-768)
2a: SCOP_d4eg3b1 (B:237-606)
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Protein Domains
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Organisms
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Class
:
All alpha proteins
(14657)
Fold
:
Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases
(48)
Superfamily
:
Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases
(48)
Family
:
automated matches
(18)
Protein domain
:
automated matches
(18)
Trypanosoma brucei [TaxId: 999953]
(5)
1a
d4eg3b2
B:607-768
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
Adenine nucleotide alpha hydrolase-like
(440)
Superfamily
:
Nucleotidylyl transferase
(325)
Family
:
automated matches
(67)
Protein domain
:
automated matches
(67)
Trypanosoma brucei [TaxId: 999953]
(5)
2a
d4eg3b1
B:237-606
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CATH Domains
(0, 0)
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Pfam Domains
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Asymmetric Unit 1
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Asym.Unit (364 KB)
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