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4EEM
Biol. Unit 4
Info
Asym.Unit (162 KB)
Biol.Unit 1 (54 KB)
Biol.Unit 2 (55 KB)
Biol.Unit 3 (54 KB)
Biol.Unit 4 (154 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF HUMAN M340H-BETA-1,4-GALACTOSYLTRANSFERASE-1 (M340H-B4GAL-T1) IN COMPLEX WITH GLCNAC-BETA1,6-MAN-ALPHA-METHYL
Authors
:
B. Ramakrishnan, P. K. Qasba
Date
:
28 Mar 12 (Deposition) - 04 Jul 12 (Release) - 26 Mar 14 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.20
Chains
:
Asym. Unit : A,B,C
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Biol. Unit 3: C (1x)
Biol. Unit 4: A,B,C (1x)
Keywords
:
Protein Carbohydrate Interactions, Gt-A Fold, Glycosyltransferase, Udp-Galactose, Transferase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
B. Ramakrishnan, E. Boeggeman, P. K. Qasba
Binding Of N-Acetylglucosamine (Glcnac) Beta 1-6-Branched Oligosaccharide Acceptors To Beta 4-Galactosyltransferase I Reveals A New Ligand Binding Mode.
J. Biol. Chem. V. 287 28666 2012
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Hetero Components
(5, 27)
Info
All Hetero Components
1a: GLYCEROL (GOLa)
1b: GLYCEROL (GOLb)
1c: GLYCEROL (GOLc)
1d: GLYCEROL (GOLd)
2a: O1-METHYL-MANNOSE (MMAa)
2b: O1-METHYL-MANNOSE (MMAb)
2c: O1-METHYL-MANNOSE (MMAc)
3a: MANGANESE (II) ION (MNa)
3b: MANGANESE (II) ION (MNb)
3c: MANGANESE (II) ION (MNc)
4a: N-ACETYL-D-GLUCOSAMINE (NAGa)
4b: N-ACETYL-D-GLUCOSAMINE (NAGb)
4c: N-ACETYL-D-GLUCOSAMINE (NAGc)
5a: SULFATE ION (SO4a)
5b: SULFATE ION (SO4b)
5c: SULFATE ION (SO4c)
5d: SULFATE ION (SO4d)
5e: SULFATE ION (SO4e)
5f: SULFATE ION (SO4f)
5g: SULFATE ION (SO4g)
5h: SULFATE ION (SO4h)
5i: SULFATE ION (SO4i)
5j: SULFATE ION (SO4j)
5k: SULFATE ION (SO4k)
5l: SULFATE ION (SO4l)
5m: SULFATE ION (SO4m)
5n: SULFATE ION (SO4n)
6a: URIDINE-5'-DIPHOSPHATE (UDPa)
6b: URIDINE-5'-DIPHOSPHATE (UDPb)
6c: URIDINE-5'-DIPHOSPHATE (UDPc)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
GOL
4
Ligand/Ion
GLYCEROL
2
MMA
3
Ligand/Ion
O1-METHYL-MANNOSE
3
MN
-1
Ligand/Ion
MANGANESE (II) ION
4
NAG
3
Ligand/Ion
N-ACETYL-D-GLUCOSAMINE
5
SO4
14
Ligand/Ion
SULFATE ION
6
UDP
3
Ligand/Ion
URIDINE-5'-DIPHOSPHATE
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close Hetero Component info
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Sites
(30, 30)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
19: CC1 (SOFTWARE)
20: CC2 (SOFTWARE)
21: CC3 (SOFTWARE)
22: CC4 (SOFTWARE)
23: CC5 (SOFTWARE)
24: CC6 (SOFTWARE)
25: CC7 (SOFTWARE)
26: CC8 (SOFTWARE)
27: CC9 (SOFTWARE)
28: DC1 (SOFTWARE)
29: DC2 (SOFTWARE)
30: DC3 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
TYR A:282 , ASP A:315 , NAG A:402 , HOH A:593 , HOH A:659
BINDING SITE FOR RESIDUE MMA A 401
02
AC2
SOFTWARE
PHE A:276 , TYR A:282 , TYR A:285 , TRP A:310 , GLY A:311 , GLY A:312 , ASP A:314 , ASP A:315 , ARG A:355 , MMA A:401 , GOL A:409 , HOH A:593 , HOH A:629 , HOH A:653
BINDING SITE FOR RESIDUE NAG A 402
03
AC3
SOFTWARE
PRO A:183 , PHE A:184 , ARG A:185 , ARG A:187 , PHE A:222 , ASP A:248 , VAL A:249 , ASP A:250 , LYS A:275 , TRP A:310 , HIS A:340 , HIS A:343 , ASP A:346 , MN A:404 , GOL A:409 , HOH A:549 , HOH A:590 , HOH A:591 , HOH A:614 , HOH A:629 , HOH A:645
BINDING SITE FOR RESIDUE UDP A 403
04
AC4
SOFTWARE
ASP A:250 , HIS A:340 , HIS A:343 , UDP A:403 , HOH A:549
BINDING SITE FOR RESIDUE MN A 404
05
AC5
SOFTWARE
GLU A:144 , PHE A:145 , ASN A:146 , ARG A:339
BINDING SITE FOR RESIDUE SO4 A 405
06
AC6
SOFTWARE
ASN A:160 , TYR A:167 , PRO A:169 , ARG A:170 , HOH A:640 , HOH A:676 , HOH A:679
BINDING SITE FOR RESIDUE SO4 A 406
07
AC7
SOFTWARE
ARG A:267 , HOH A:584
BINDING SITE FOR RESIDUE SO4 A 407
08
AC8
SOFTWARE
ARG A:358 , ASN B:186
BINDING SITE FOR RESIDUE SO4 A 408
09
AC9
SOFTWARE
ARG A:224 , TRP A:310 , GLY A:311 , GLU A:313 , ASP A:314 , NAG A:402 , UDP A:403 , HOH A:580 , HOH A:607
BINDING SITE FOR RESIDUE GOL A 409
10
BC1
SOFTWARE
SER A:368 , ASP A:369 , PHE B:184 , ARG B:185 , ASN B:186 , ASN B:215 , HOH B:713
BINDING SITE FOR RESIDUE GOL A 410
11
BC2
SOFTWARE
TYR B:282 , ASP B:315 , NAG B:402 , HOH B:617
BINDING SITE FOR RESIDUE MMA B 401
12
BC3
SOFTWARE
PHE B:276 , TYR B:282 , TYR B:285 , GLY B:311 , GLY B:312 , ASP B:314 , ASP B:315 , ARG B:355 , MMA B:401 , HOH B:617
BINDING SITE FOR RESIDUE NAG B 402
13
BC4
SOFTWARE
HOH A:510 , PRO B:183 , PHE B:184 , ARG B:185 , ARG B:187 , PHE B:222 , ASP B:248 , VAL B:249 , ASP B:250 , LYS B:275 , TRP B:310 , HIS B:340 , HIS B:343 , ASP B:346 , MN B:404 , GOL B:412 , HOH B:585
BINDING SITE FOR RESIDUE UDP B 403
14
BC5
SOFTWARE
ASP B:250 , HIS B:340 , HIS B:343 , UDP B:403
BINDING SITE FOR RESIDUE MN B 404
15
BC6
SOFTWARE
ASN B:160 , TYR B:167 , PRO B:169 , ARG B:170 , HOH B:576 , HOH B:577 , HOH B:592 , HOH B:622 , HOH B:672
BINDING SITE FOR RESIDUE SO4 B 405
16
BC7
SOFTWARE
ASN B:306 , TRP B:308 , ARG B:358 , SER B:398 , HOH B:646
BINDING SITE FOR RESIDUE SO4 B 406
17
BC8
SOFTWARE
HIS B:343 , SER B:344 , HOH B:706
BINDING SITE FOR RESIDUE SO4 B 407
18
BC9
SOFTWARE
GLU B:144 , PHE B:145 , ASN B:146 , ARG B:339 , ARG B:342 , HOH B:588 , HOH B:690
BINDING SITE FOR RESIDUE SO4 B 408
19
CC1
SOFTWARE
ARG B:267 , PRO B:331 , HOH B:567
BINDING SITE FOR RESIDUE SO4 B 409
20
CC2
SOFTWARE
ASP B:150 , LEU B:151
BINDING SITE FOR RESIDUE SO4 B 410
21
CC3
SOFTWARE
PHE B:263 , SER B:264 , HOH B:506
BINDING SITE FOR RESIDUE SO4 B 411
22
CC4
SOFTWARE
ARG B:224 , TRP B:310 , GLY B:311 , GLU B:313 , ASP B:314 , UDP B:403 , HOH B:701 , HOH B:711
BINDING SITE FOR RESIDUE GOL B 412
23
CC5
SOFTWARE
TYR C:282 , NAG C:402
BINDING SITE FOR RESIDUE MMA C 401
24
CC6
SOFTWARE
PHE C:276 , TYR C:282 , TYR C:285 , TRP C:310 , GLY C:311 , GLY C:312 , ASP C:314 , ASP C:315 , ARG C:355 , MMA C:401 , GOL C:408 , HOH C:594
BINDING SITE FOR RESIDUE NAG C 402
25
CC7
SOFTWARE
PRO C:183 , PHE C:184 , ARG C:185 , ARG C:187 , PHE C:222 , ASP C:248 , VAL C:249 , ASP C:250 , LYS C:275 , TRP C:310 , HIS C:340 , HIS C:343 , ASP C:346 , MN C:404 , GOL C:408 , HOH C:544
BINDING SITE FOR RESIDUE UDP C 403
26
CC8
SOFTWARE
ASP C:250 , HIS C:340 , HIS C:343 , UDP C:403 , HOH C:542
BINDING SITE FOR RESIDUE MN C 404
27
CC9
SOFTWARE
ASN C:160 , TYR C:167 , PRO C:169 , ARG C:170 , HOH C:545 , HOH C:556 , HOH C:633
BINDING SITE FOR RESIDUE SO4 C 405
28
DC1
SOFTWARE
GLU C:144 , PHE C:145 , ASN C:146 , ARG C:339
BINDING SITE FOR RESIDUE SO4 C 406
29
DC2
SOFTWARE
HIS C:343 , SER C:344
BINDING SITE FOR RESIDUE SO4 C 407
30
DC3
SOFTWARE
ARG C:224 , TRP C:310 , GLY C:311 , GLU C:313 , ASP C:314 , NAG C:402 , UDP C:403 , HOH C:588 , HOH C:607
BINDING SITE FOR RESIDUE GOL C 408
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
View:
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Sorry, no Info available
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PROSITE Patterns/Profiles
(, 0)
Info
All PROSITE Patterns/Profiles
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End label:
Sorry, no Info available
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Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(1, 3)
Info
All SCOP Domains
1a: SCOP_d4eema_ (A:)
1b: SCOP_d4eemb_ (B:)
1c: SCOP_d4eemc_ (C:)
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(
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)
(
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)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
Nucleotide-diphospho-sugar transferases
(408)
Superfamily
:
Nucleotide-diphospho-sugar transferases
(408)
Family
:
beta 1,4 galactosyltransferase (b4GalT1)
(39)
Protein domain
:
automated matches
(19)
Human (Homo sapiens) [TaxId: 9606]
(17)
1a
d4eema_
A:
1b
d4eemb_
B:
1c
d4eemc_
C:
[
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CATH Domains
(0, 0)
Info
all CATH domains
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Label:
Sorry, no Info available
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Pfam Domains
(0, 0)
Info
all PFAM domains
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Sorry, no Info available
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