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4EEM
Biol. Unit 2
Info
Asym.Unit (162 KB)
Biol.Unit 1 (54 KB)
Biol.Unit 2 (55 KB)
Biol.Unit 3 (54 KB)
Biol.Unit 4 (154 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF HUMAN M340H-BETA-1,4-GALACTOSYLTRANSFERASE-1 (M340H-B4GAL-T1) IN COMPLEX WITH GLCNAC-BETA1,6-MAN-ALPHA-METHYL
Authors
:
B. Ramakrishnan, P. K. Qasba
Date
:
28 Mar 12 (Deposition) - 04 Jul 12 (Release) - 26 Mar 14 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.20
Chains
:
Asym. Unit : A,B,C
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Biol. Unit 3: C (1x)
Biol. Unit 4: A,B,C (1x)
Keywords
:
Protein Carbohydrate Interactions, Gt-A Fold, Glycosyltransferase, Udp-Galactose, Transferase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
B. Ramakrishnan, E. Boeggeman, P. K. Qasba
Binding Of N-Acetylglucosamine (Glcnac) Beta 1-6-Branched Oligosaccharide Acceptors To Beta 4-Galactosyltransferase I Reveals A New Ligand Binding Mode.
J. Biol. Chem. V. 287 28666 2012
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Hetero Components
(5, 11)
Info
All Hetero Components
1a: GLYCEROL (GOLa)
1b: GLYCEROL (GOLb)
1c: GLYCEROL (GOLc)
1d: GLYCEROL (GOLd)
2a: O1-METHYL-MANNOSE (MMAa)
2b: O1-METHYL-MANNOSE (MMAb)
2c: O1-METHYL-MANNOSE (MMAc)
3a: MANGANESE (II) ION (MNa)
3b: MANGANESE (II) ION (MNb)
3c: MANGANESE (II) ION (MNc)
4a: N-ACETYL-D-GLUCOSAMINE (NAGa)
4b: N-ACETYL-D-GLUCOSAMINE (NAGb)
4c: N-ACETYL-D-GLUCOSAMINE (NAGc)
5a: SULFATE ION (SO4a)
5b: SULFATE ION (SO4b)
5c: SULFATE ION (SO4c)
5d: SULFATE ION (SO4d)
5e: SULFATE ION (SO4e)
5f: SULFATE ION (SO4f)
5g: SULFATE ION (SO4g)
5h: SULFATE ION (SO4h)
5i: SULFATE ION (SO4i)
5j: SULFATE ION (SO4j)
5k: SULFATE ION (SO4k)
5l: SULFATE ION (SO4l)
5m: SULFATE ION (SO4m)
5n: SULFATE ION (SO4n)
6a: URIDINE-5'-DIPHOSPHATE (UDPa)
6b: URIDINE-5'-DIPHOSPHATE (UDPb)
6c: URIDINE-5'-DIPHOSPHATE (UDPc)
View:
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Label:
No.
Name
Count
Type
Full Name
1
GOL
1
Ligand/Ion
GLYCEROL
2
MMA
1
Ligand/Ion
O1-METHYL-MANNOSE
3
MN
-1
Ligand/Ion
MANGANESE (II) ION
4
NAG
1
Ligand/Ion
N-ACETYL-D-GLUCOSAMINE
5
SO4
7
Ligand/Ion
SULFATE ION
6
UDP
1
Ligand/Ion
URIDINE-5'-DIPHOSPHATE
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Sites
(14, 14)
Info
All Sites
01: AC8 (SOFTWARE)
02: BC1 (SOFTWARE)
03: BC2 (SOFTWARE)
04: BC3 (SOFTWARE)
05: BC4 (SOFTWARE)
06: BC5 (SOFTWARE)
07: BC6 (SOFTWARE)
08: BC7 (SOFTWARE)
09: BC8 (SOFTWARE)
10: BC9 (SOFTWARE)
11: CC1 (SOFTWARE)
12: CC2 (SOFTWARE)
13: CC3 (SOFTWARE)
14: CC4 (SOFTWARE)
View:
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No.
Name
Evidence
Residues
Description
01
AC8
SOFTWARE
ARG A:358 , ASN B:186
BINDING SITE FOR RESIDUE SO4 A 408
02
BC1
SOFTWARE
SER A:368 , ASP A:369 , PHE B:184 , ARG B:185 , ASN B:186 , ASN B:215 , HOH B:713
BINDING SITE FOR RESIDUE GOL A 410
03
BC2
SOFTWARE
TYR B:282 , ASP B:315 , NAG B:402 , HOH B:617
BINDING SITE FOR RESIDUE MMA B 401
04
BC3
SOFTWARE
PHE B:276 , TYR B:282 , TYR B:285 , GLY B:311 , GLY B:312 , ASP B:314 , ASP B:315 , ARG B:355 , MMA B:401 , HOH B:617
BINDING SITE FOR RESIDUE NAG B 402
05
BC4
SOFTWARE
HOH A:510 , PRO B:183 , PHE B:184 , ARG B:185 , ARG B:187 , PHE B:222 , ASP B:248 , VAL B:249 , ASP B:250 , LYS B:275 , TRP B:310 , HIS B:340 , HIS B:343 , ASP B:346 , MN B:404 , GOL B:412 , HOH B:585
BINDING SITE FOR RESIDUE UDP B 403
06
BC5
SOFTWARE
ASP B:250 , HIS B:340 , HIS B:343 , UDP B:403
BINDING SITE FOR RESIDUE MN B 404
07
BC6
SOFTWARE
ASN B:160 , TYR B:167 , PRO B:169 , ARG B:170 , HOH B:576 , HOH B:577 , HOH B:592 , HOH B:622 , HOH B:672
BINDING SITE FOR RESIDUE SO4 B 405
08
BC7
SOFTWARE
ASN B:306 , TRP B:308 , ARG B:358 , SER B:398 , HOH B:646
BINDING SITE FOR RESIDUE SO4 B 406
09
BC8
SOFTWARE
HIS B:343 , SER B:344 , HOH B:706
BINDING SITE FOR RESIDUE SO4 B 407
10
BC9
SOFTWARE
GLU B:144 , PHE B:145 , ASN B:146 , ARG B:339 , ARG B:342 , HOH B:588 , HOH B:690
BINDING SITE FOR RESIDUE SO4 B 408
11
CC1
SOFTWARE
ARG B:267 , PRO B:331 , HOH B:567
BINDING SITE FOR RESIDUE SO4 B 409
12
CC2
SOFTWARE
ASP B:150 , LEU B:151
BINDING SITE FOR RESIDUE SO4 B 410
13
CC3
SOFTWARE
PHE B:263 , SER B:264 , HOH B:506
BINDING SITE FOR RESIDUE SO4 B 411
14
CC4
SOFTWARE
ARG B:224 , TRP B:310 , GLY B:311 , GLU B:313 , ASP B:314 , UDP B:403 , HOH B:701 , HOH B:711
BINDING SITE FOR RESIDUE GOL B 412
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are only available for the asymmetric unit)
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PROSITE Patterns/Profiles
(, 0)
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Exons
(0, 0)
Info
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(1, 3)
Info
All SCOP Domains
1a: SCOP_d4eema_ (A:)
1b: SCOP_d4eemb_ (B:)
1c: SCOP_d4eemc_ (C:)
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Protein Domains
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Organisms
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(
)
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
Nucleotide-diphospho-sugar transferases
(408)
Superfamily
:
Nucleotide-diphospho-sugar transferases
(408)
Family
:
beta 1,4 galactosyltransferase (b4GalT1)
(39)
Protein domain
:
automated matches
(19)
Human (Homo sapiens) [TaxId: 9606]
(17)
1a
d4eema_
A:
1b
d4eemb_
B:
1c
d4eemc_
C:
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CATH Domains
(0, 0)
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Pfam Domains
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Chain B
Asymmetric Unit 1
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Show PDB file:
Asym.Unit (162 KB)
Header - Asym.Unit
Biol.Unit 1 (54 KB)
Header - Biol.Unit 1
Biol.Unit 2 (55 KB)
Header - Biol.Unit 2
Biol.Unit 3 (54 KB)
Header - Biol.Unit 3
Biol.Unit 4 (154 KB)
Header - Biol.Unit 4
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