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4EEA
Biol. Unit 4
Info
Asym.Unit (167 KB)
Biol.Unit 1 (56 KB)
Biol.Unit 2 (57 KB)
Biol.Unit 3 (54 KB)
Biol.Unit 4 (312 KB)
Biol.Unit 5 (158 KB)
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Title
:
CRYSTAL STRUCTURE OF HUMAN M340H-BETA-1,4-GALACTOSYLTRANSFERASE-1 (M340H-B4GAL-T1) IN COMPLEX WITH GLCNAC-BETA1,6-GAL-BETA1,4-GLC-BETA
Authors
:
B. Ramakrishnan, P. K. Qasba
Date
:
28 Mar 12 (Deposition) - 04 Jul 12 (Release) - 26 Mar 14 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.00
Chains
:
Asym. Unit : A,B,C
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Biol. Unit 3: C (1x)
Biol. Unit 4: A,B,C (2x)
Biol. Unit 5: A,B,C (1x)
Keywords
:
Enzyme-Carbohydrate Complex, Gt-A Fold, Glycosyltransferase, Udp- Galactose, Transferase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
B. Ramakrishnan, E. Boeggeman, P. K. Qasba
Binding Of N-Acetylglucosamine (Glcnac) Beta 1-6-Branched Oligosaccharide Acceptors To Beta 4-Galactosyltransferase I Reveals A New Ligand Binding Mode.
J. Biol. Chem. V. 287 28666 2012
[
close entry info
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Hetero Components
(6, 72)
Info
All Hetero Components
1a: BETA-D-GLUCOSE (BGCa)
1b: BETA-D-GLUCOSE (BGCb)
1c: BETA-D-GLUCOSE (BGCc)
2a: BETA-D-GALACTOSE (GALa)
2b: BETA-D-GALACTOSE (GALb)
2c: BETA-D-GALACTOSE (GALc)
3a: GLYCEROL (GOLa)
3b: GLYCEROL (GOLb)
3c: GLYCEROL (GOLc)
3d: GLYCEROL (GOLd)
4a: MANGANESE (II) ION (MNa)
4b: MANGANESE (II) ION (MNb)
4c: MANGANESE (II) ION (MNc)
5a: N-ACETYL-D-GLUCOSAMINE (NAGa)
5b: N-ACETYL-D-GLUCOSAMINE (NAGb)
5c: N-ACETYL-D-GLUCOSAMINE (NAGc)
6a: SULFATE ION (SO4a)
6b: SULFATE ION (SO4b)
6c: SULFATE ION (SO4c)
6d: SULFATE ION (SO4d)
6e: SULFATE ION (SO4e)
6f: SULFATE ION (SO4f)
6g: SULFATE ION (SO4g)
6h: SULFATE ION (SO4h)
6i: SULFATE ION (SO4i)
6j: SULFATE ION (SO4j)
6k: SULFATE ION (SO4k)
6l: SULFATE ION (SO4l)
6m: SULFATE ION (SO4m)
6n: SULFATE ION (SO4n)
6o: SULFATE ION (SO4o)
6p: SULFATE ION (SO4p)
6q: SULFATE ION (SO4q)
6r: SULFATE ION (SO4r)
6s: SULFATE ION (SO4s)
6t: SULFATE ION (SO4t)
7a: URIDINE-5'-DIPHOSPHATE (UDPa)
7b: URIDINE-5'-DIPHOSPHATE (UDPb)
7c: URIDINE-5'-DIPHOSPHATE (UDPc)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
BGC
6
Ligand/Ion
BETA-D-GLUCOSE
2
GAL
6
Ligand/Ion
BETA-D-GALACTOSE
3
GOL
8
Ligand/Ion
GLYCEROL
4
MN
-1
Ligand/Ion
MANGANESE (II) ION
5
NAG
6
Ligand/Ion
N-ACETYL-D-GLUCOSAMINE
6
SO4
40
Ligand/Ion
SULFATE ION
7
UDP
6
Ligand/Ion
URIDINE-5'-DIPHOSPHATE
[
close Hetero Component info
]
Sites
(39, 39)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
19: CC1 (SOFTWARE)
20: CC2 (SOFTWARE)
21: CC3 (SOFTWARE)
22: CC4 (SOFTWARE)
23: CC5 (SOFTWARE)
24: CC6 (SOFTWARE)
25: CC7 (SOFTWARE)
26: CC8 (SOFTWARE)
27: CC9 (SOFTWARE)
28: DC1 (SOFTWARE)
29: DC2 (SOFTWARE)
30: DC3 (SOFTWARE)
31: DC4 (SOFTWARE)
32: DC5 (SOFTWARE)
33: DC6 (SOFTWARE)
34: DC7 (SOFTWARE)
35: DC8 (SOFTWARE)
36: DC9 (SOFTWARE)
37: EC1 (SOFTWARE)
38: EC2 (SOFTWARE)
39: EC3 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
LYS A:275 , TRP A:310 , GAL A:402 , NAG A:403 , HOH A:702
BINDING SITE FOR RESIDUE BGC A 401
02
AC2
SOFTWARE
TRP A:310 , ARG A:355 , PHE A:356 , BGC A:401 , NAG A:403
BINDING SITE FOR RESIDUE GAL A 402
03
AC3
SOFTWARE
PHE A:276 , TYR A:282 , TYR A:285 , GLY A:311 , GLY A:312 , ASP A:314 , ASP A:315 , ARG A:355 , BGC A:401 , GAL A:402 , GOL A:406 , HOH A:650
BINDING SITE FOR RESIDUE NAG A 403
04
AC4
SOFTWARE
PRO A:183 , PHE A:184 , ARG A:185 , ARG A:187 , PHE A:222 , ASP A:248 , VAL A:249 , ASP A:250 , LYS A:275 , HIS A:340 , HIS A:343 , ASP A:346 , MN A:405 , GOL A:406 , HOH A:565 , HOH A:625 , HOH A:673 , HOH A:691
BINDING SITE FOR RESIDUE UDP A 404
05
AC5
SOFTWARE
ASP A:250 , HIS A:340 , HIS A:343 , UDP A:404
BINDING SITE FOR RESIDUE MN A 405
06
AC6
SOFTWARE
TRP A:310 , GLY A:311 , GLU A:313 , ASP A:314 , NAG A:403 , UDP A:404 , HOH A:584 , HOH A:758
BINDING SITE FOR RESIDUE GOL A 406
07
AC7
SOFTWARE
GLU A:144 , PHE A:145 , ASN A:146 , ARG A:339
BINDING SITE FOR RESIDUE SO4 A 407
08
AC8
SOFTWARE
ASN A:160 , TYR A:167 , PRO A:169 , ARG A:170 , HOH A:605 , HOH A:692 , HOH A:753
BINDING SITE FOR RESIDUE SO4 A 408
09
AC9
SOFTWARE
ARG A:267 , HOH A:566 , HOH A:581
BINDING SITE FOR RESIDUE SO4 A 409
10
BC1
SOFTWARE
HIS A:343 , SER A:344
BINDING SITE FOR RESIDUE SO4 A 410
11
BC2
SOFTWARE
LYS A:162 , MET A:163
BINDING SITE FOR RESIDUE SO4 A 411
12
BC3
SOFTWARE
PHE A:318 , SER A:327 , ILE A:328 , PHE B:318 , ILE B:328
BINDING SITE FOR RESIDUE SO4 A 412
13
BC4
SOFTWARE
GAL B:402 , NAG B:403
BINDING SITE FOR RESIDUE BGC B 401
14
BC5
SOFTWARE
TRP B:310 , ARG B:355 , BGC B:401 , NAG B:403
BINDING SITE FOR RESIDUE GAL B 402
15
BC6
SOFTWARE
PHE B:276 , TYR B:282 , TYR B:285 , GLY B:311 , GLY B:312 , ASP B:314 , ASP B:315 , ARG B:355 , BGC B:401 , GAL B:402 , GOL B:406 , HOH B:504
BINDING SITE FOR RESIDUE NAG B 403
16
BC7
SOFTWARE
PRO B:183 , PHE B:184 , ARG B:185 , ARG B:187 , PHE B:222 , ASP B:248 , VAL B:249 , ASP B:250 , LYS B:275 , TRP B:310 , HIS B:340 , HIS B:343 , ASP B:346 , MN B:405 , GOL B:406 , HOH B:528 , HOH B:596 , HOH B:614
BINDING SITE FOR RESIDUE UDP B 404
17
BC8
SOFTWARE
ASP B:250 , HIS B:340 , HIS B:343 , UDP B:404
BINDING SITE FOR RESIDUE MN B 405
18
BC9
SOFTWARE
TRP B:310 , GLY B:311 , GLU B:313 , NAG B:403 , UDP B:404 , HOH B:504 , HOH B:770 , HOH B:775
BINDING SITE FOR RESIDUE GOL B 406
19
CC1
SOFTWARE
SER A:368 , ASP A:369 , ARG B:185 , ASN B:186 , ASN B:215 , HOH B:767
BINDING SITE FOR RESIDUE GOL B 407
20
CC2
SOFTWARE
GLU B:144 , PHE B:145 , ASN B:146 , ARG B:339 , ARG B:342
BINDING SITE FOR RESIDUE SO4 B 408
21
CC3
SOFTWARE
ASN B:160 , TYR B:167 , PRO B:169 , ARG B:170 , HOH B:562 , HOH B:579 , HOH B:628 , HOH B:708
BINDING SITE FOR RESIDUE SO4 B 409
22
CC4
SOFTWARE
ARG B:267 , PRO B:331 , HOH B:577
BINDING SITE FOR RESIDUE SO4 B 410
23
CC5
SOFTWARE
HIS B:343 , SER B:344
BINDING SITE FOR RESIDUE SO4 B 411
24
CC6
SOFTWARE
GLN B:233 , TYR B:376 , HOH B:575
BINDING SITE FOR RESIDUE SO4 B 412
25
CC7
SOFTWARE
PRO B:148 , VAL B:149 , ASP B:150 , TYR B:196
BINDING SITE FOR RESIDUE SO4 B 413
26
CC8
SOFTWARE
ASN B:306 , TRP B:308 , ARG B:358 , PRO B:397 , SER B:398 , HOH B:627
BINDING SITE FOR RESIDUE SO4 B 414
27
CC9
SOFTWARE
ASP B:150 , LEU B:151 , GLU B:152 , LYS B:192 , HOH B:685
BINDING SITE FOR RESIDUE SO4 B 415
28
DC1
SOFTWARE
TRP C:310 , GAL C:402 , NAG C:403 , HOH C:645
BINDING SITE FOR RESIDUE BGC C 401
29
DC2
SOFTWARE
ARG C:355 , BGC C:401 , NAG C:403
BINDING SITE FOR RESIDUE GAL C 402
30
DC3
SOFTWARE
PHE C:276 , TYR C:282 , TYR C:285 , GLY C:311 , GLY C:312 , ASP C:314 , ASP C:315 , ARG C:355 , BGC C:401 , GAL C:402 , GOL C:406
BINDING SITE FOR RESIDUE NAG C 403
31
DC4
SOFTWARE
PRO C:183 , PHE C:184 , ARG C:185 , ARG C:187 , PHE C:222 , ASP C:248 , VAL C:249 , ASP C:250 , LYS C:275 , TRP C:310 , HIS C:340 , HIS C:343 , ASP C:346 , MN C:405 , GOL C:406 , HOH C:587
BINDING SITE FOR RESIDUE UDP C 404
32
DC5
SOFTWARE
ASP C:250 , HIS C:340 , HIS C:343 , UDP C:404 , HOH C:587
BINDING SITE FOR RESIDUE MN C 405
33
DC6
SOFTWARE
ARG C:224 , TRP C:310 , GLY C:311 , GLU C:313 , ASP C:314 , NAG C:403 , UDP C:404 , HOH C:577
BINDING SITE FOR RESIDUE GOL C 406
34
DC7
SOFTWARE
ASN C:160 , TYR C:167 , PRO C:169 , ARG C:170 , HOH C:527 , HOH C:534 , HOH C:572 , HOH C:647 , HOH C:663
BINDING SITE FOR RESIDUE SO4 C 407
35
DC8
SOFTWARE
GLU C:234 , LYS C:237 , TYR C:376 , GLN C:377 , VAL C:378
BINDING SITE FOR RESIDUE SO4 C 408
36
DC9
SOFTWARE
GLU C:144 , PHE C:145 , ASN C:146 , ARG C:339
BINDING SITE FOR RESIDUE SO4 C 409
37
EC1
SOFTWARE
HIS C:343 , SER C:344
BINDING SITE FOR RESIDUE SO4 C 410
38
EC2
SOFTWARE
ARG C:267 , PRO C:331
BINDING SITE FOR RESIDUE SO4 C 411
39
EC3
SOFTWARE
PHE C:263 , SER C:264 , HOH C:512
BINDING SITE FOR RESIDUE SO4 C 412
[
close Site info
]
SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
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PROSITE Patterns/Profiles
(, 0)
Info
All PROSITE Patterns/Profiles
;
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End label:
Sorry, no Info available
[
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Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
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Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(1, 3)
Info
All SCOP Domains
1a: SCOP_d4eeaa_ (A:)
1b: SCOP_d4eeab_ (B:)
1c: SCOP_d4eeac_ (C:)
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(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
Nucleotide-diphospho-sugar transferases
(408)
Superfamily
:
Nucleotide-diphospho-sugar transferases
(408)
Family
:
beta 1,4 galactosyltransferase (b4GalT1)
(39)
Protein domain
:
automated matches
(19)
Human (Homo sapiens) [TaxId: 9606]
(17)
1a
d4eeaa_
A:
1b
d4eeab_
B:
1c
d4eeac_
C:
[
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]
CATH Domains
(0, 0)
Info
all CATH domains
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Sorry, no Info available
[
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Pfam Domains
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all PFAM domains
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Sorry, no Info available
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Asym.Unit (167 KB)
Header - Asym.Unit
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Header - Biol.Unit 1
Biol.Unit 2 (57 KB)
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Biol.Unit 3 (54 KB)
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Biol.Unit 4 (312 KB)
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Biol.Unit 5 (158 KB)
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