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4EEA
Biol. Unit 3
Info
Asym.Unit (167 KB)
Biol.Unit 1 (56 KB)
Biol.Unit 2 (57 KB)
Biol.Unit 3 (54 KB)
Biol.Unit 4 (312 KB)
Biol.Unit 5 (158 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF HUMAN M340H-BETA-1,4-GALACTOSYLTRANSFERASE-1 (M340H-B4GAL-T1) IN COMPLEX WITH GLCNAC-BETA1,6-GAL-BETA1,4-GLC-BETA
Authors
:
B. Ramakrishnan, P. K. Qasba
Date
:
28 Mar 12 (Deposition) - 04 Jul 12 (Release) - 26 Mar 14 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.00
Chains
:
Asym. Unit : A,B,C
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Biol. Unit 3: C (1x)
Biol. Unit 4: A,B,C (2x)
Biol. Unit 5: A,B,C (1x)
Keywords
:
Enzyme-Carbohydrate Complex, Gt-A Fold, Glycosyltransferase, Udp- Galactose, Transferase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
B. Ramakrishnan, E. Boeggeman, P. K. Qasba
Binding Of N-Acetylglucosamine (Glcnac) Beta 1-6-Branched Oligosaccharide Acceptors To Beta 4-Galactosyltransferase I Reveals A New Ligand Binding Mode.
J. Biol. Chem. V. 287 28666 2012
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Hetero Components
(6, 11)
Info
All Hetero Components
1a: BETA-D-GLUCOSE (BGCa)
1b: BETA-D-GLUCOSE (BGCb)
1c: BETA-D-GLUCOSE (BGCc)
2a: BETA-D-GALACTOSE (GALa)
2b: BETA-D-GALACTOSE (GALb)
2c: BETA-D-GALACTOSE (GALc)
3a: GLYCEROL (GOLa)
3b: GLYCEROL (GOLb)
3c: GLYCEROL (GOLc)
3d: GLYCEROL (GOLd)
4a: MANGANESE (II) ION (MNa)
4b: MANGANESE (II) ION (MNb)
4c: MANGANESE (II) ION (MNc)
5a: N-ACETYL-D-GLUCOSAMINE (NAGa)
5b: N-ACETYL-D-GLUCOSAMINE (NAGb)
5c: N-ACETYL-D-GLUCOSAMINE (NAGc)
6a: SULFATE ION (SO4a)
6b: SULFATE ION (SO4b)
6c: SULFATE ION (SO4c)
6d: SULFATE ION (SO4d)
6e: SULFATE ION (SO4e)
6f: SULFATE ION (SO4f)
6g: SULFATE ION (SO4g)
6h: SULFATE ION (SO4h)
6i: SULFATE ION (SO4i)
6j: SULFATE ION (SO4j)
6k: SULFATE ION (SO4k)
6l: SULFATE ION (SO4l)
6m: SULFATE ION (SO4m)
6n: SULFATE ION (SO4n)
6o: SULFATE ION (SO4o)
6p: SULFATE ION (SO4p)
6q: SULFATE ION (SO4q)
6r: SULFATE ION (SO4r)
6s: SULFATE ION (SO4s)
6t: SULFATE ION (SO4t)
7a: URIDINE-5'-DIPHOSPHATE (UDPa)
7b: URIDINE-5'-DIPHOSPHATE (UDPb)
7c: URIDINE-5'-DIPHOSPHATE (UDPc)
View:
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Label:
No.
Name
Count
Type
Full Name
1
BGC
1
Ligand/Ion
BETA-D-GLUCOSE
2
GAL
1
Ligand/Ion
BETA-D-GALACTOSE
3
GOL
1
Ligand/Ion
GLYCEROL
4
MN
-1
Ligand/Ion
MANGANESE (II) ION
5
NAG
1
Ligand/Ion
N-ACETYL-D-GLUCOSAMINE
6
SO4
6
Ligand/Ion
SULFATE ION
7
UDP
1
Ligand/Ion
URIDINE-5'-DIPHOSPHATE
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Sites
(12, 12)
Info
All Sites
01: DC1 (SOFTWARE)
02: DC2 (SOFTWARE)
03: DC3 (SOFTWARE)
04: DC4 (SOFTWARE)
05: DC5 (SOFTWARE)
06: DC6 (SOFTWARE)
07: DC7 (SOFTWARE)
08: DC8 (SOFTWARE)
09: DC9 (SOFTWARE)
10: EC1 (SOFTWARE)
11: EC2 (SOFTWARE)
12: EC3 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
01
DC1
SOFTWARE
TRP C:310 , GAL C:402 , NAG C:403 , HOH C:645
BINDING SITE FOR RESIDUE BGC C 401
02
DC2
SOFTWARE
ARG C:355 , BGC C:401 , NAG C:403
BINDING SITE FOR RESIDUE GAL C 402
03
DC3
SOFTWARE
PHE C:276 , TYR C:282 , TYR C:285 , GLY C:311 , GLY C:312 , ASP C:314 , ASP C:315 , ARG C:355 , BGC C:401 , GAL C:402 , GOL C:406
BINDING SITE FOR RESIDUE NAG C 403
04
DC4
SOFTWARE
PRO C:183 , PHE C:184 , ARG C:185 , ARG C:187 , PHE C:222 , ASP C:248 , VAL C:249 , ASP C:250 , LYS C:275 , TRP C:310 , HIS C:340 , HIS C:343 , ASP C:346 , MN C:405 , GOL C:406 , HOH C:587
BINDING SITE FOR RESIDUE UDP C 404
05
DC5
SOFTWARE
ASP C:250 , HIS C:340 , HIS C:343 , UDP C:404 , HOH C:587
BINDING SITE FOR RESIDUE MN C 405
06
DC6
SOFTWARE
ARG C:224 , TRP C:310 , GLY C:311 , GLU C:313 , ASP C:314 , NAG C:403 , UDP C:404 , HOH C:577
BINDING SITE FOR RESIDUE GOL C 406
07
DC7
SOFTWARE
ASN C:160 , TYR C:167 , PRO C:169 , ARG C:170 , HOH C:527 , HOH C:534 , HOH C:572 , HOH C:647 , HOH C:663
BINDING SITE FOR RESIDUE SO4 C 407
08
DC8
SOFTWARE
GLU C:234 , LYS C:237 , TYR C:376 , GLN C:377 , VAL C:378
BINDING SITE FOR RESIDUE SO4 C 408
09
DC9
SOFTWARE
GLU C:144 , PHE C:145 , ASN C:146 , ARG C:339
BINDING SITE FOR RESIDUE SO4 C 409
10
EC1
SOFTWARE
HIS C:343 , SER C:344
BINDING SITE FOR RESIDUE SO4 C 410
11
EC2
SOFTWARE
ARG C:267 , PRO C:331
BINDING SITE FOR RESIDUE SO4 C 411
12
EC3
SOFTWARE
PHE C:263 , SER C:264 , HOH C:512
BINDING SITE FOR RESIDUE SO4 C 412
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
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PROSITE Patterns/Profiles
(, 0)
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Exons
(0, 0)
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(1, 3)
Info
All SCOP Domains
1a: SCOP_d4eeaa_ (A:)
1b: SCOP_d4eeab_ (B:)
1c: SCOP_d4eeac_ (C:)
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Protein Domains
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Organisms
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Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
Nucleotide-diphospho-sugar transferases
(408)
Superfamily
:
Nucleotide-diphospho-sugar transferases
(408)
Family
:
beta 1,4 galactosyltransferase (b4GalT1)
(39)
Protein domain
:
automated matches
(19)
Human (Homo sapiens) [TaxId: 9606]
(17)
1a
d4eeaa_
A:
1b
d4eeab_
B:
1c
d4eeac_
C:
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CATH Domains
(0, 0)
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Pfam Domains
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Chain C
Asymmetric Unit 1
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select chains 'A' and 'C'
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select all 'ALA' residues (Alanines) in chain 'A'
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select residue range 5 to 10 in all chains
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select residue range 5 to 10 in chain 'A'
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set label size to 20 (allowed range: 1-58)
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show SS bonds with a radius of 100 units (=0.4Å)
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Show PDB file:
Asym.Unit (167 KB)
Header - Asym.Unit
Biol.Unit 1 (56 KB)
Header - Biol.Unit 1
Biol.Unit 2 (57 KB)
Header - Biol.Unit 2
Biol.Unit 3 (54 KB)
Header - Biol.Unit 3
Biol.Unit 4 (312 KB)
Header - Biol.Unit 4
Biol.Unit 5 (158 KB)
Header - Biol.Unit 5
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