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4EEA
Asym. Unit
Info
Asym.Unit (167 KB)
Biol.Unit 1 (56 KB)
Biol.Unit 2 (57 KB)
Biol.Unit 3 (54 KB)
Biol.Unit 4 (312 KB)
Biol.Unit 5 (158 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF HUMAN M340H-BETA-1,4-GALACTOSYLTRANSFERASE-1 (M340H-B4GAL-T1) IN COMPLEX WITH GLCNAC-BETA1,6-GAL-BETA1,4-GLC-BETA
Authors
:
B. Ramakrishnan, P. K. Qasba
Date
:
28 Mar 12 (Deposition) - 04 Jul 12 (Release) - 26 Mar 14 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.00
Chains
:
Asym. Unit : A,B,C
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Biol. Unit 3: C (1x)
Biol. Unit 4: A,B,C (2x)
Biol. Unit 5: A,B,C (1x)
Keywords
:
Enzyme-Carbohydrate Complex, Gt-A Fold, Glycosyltransferase, Udp- Galactose, Transferase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
B. Ramakrishnan, E. Boeggeman, P. K. Qasba
Binding Of N-Acetylglucosamine (Glcnac) Beta 1-6-Branched Oligosaccharide Acceptors To Beta 4-Galactosyltransferase I Reveals A New Ligand Binding Mode.
J. Biol. Chem. V. 287 28666 2012
[
close entry info
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Hetero Components
(7, 39)
Info
All Hetero Components
1a: BETA-D-GLUCOSE (BGCa)
1b: BETA-D-GLUCOSE (BGCb)
1c: BETA-D-GLUCOSE (BGCc)
2a: BETA-D-GALACTOSE (GALa)
2b: BETA-D-GALACTOSE (GALb)
2c: BETA-D-GALACTOSE (GALc)
3a: GLYCEROL (GOLa)
3b: GLYCEROL (GOLb)
3c: GLYCEROL (GOLc)
3d: GLYCEROL (GOLd)
4a: MANGANESE (II) ION (MNa)
4b: MANGANESE (II) ION (MNb)
4c: MANGANESE (II) ION (MNc)
5a: N-ACETYL-D-GLUCOSAMINE (NAGa)
5b: N-ACETYL-D-GLUCOSAMINE (NAGb)
5c: N-ACETYL-D-GLUCOSAMINE (NAGc)
6a: SULFATE ION (SO4a)
6b: SULFATE ION (SO4b)
6c: SULFATE ION (SO4c)
6d: SULFATE ION (SO4d)
6e: SULFATE ION (SO4e)
6f: SULFATE ION (SO4f)
6g: SULFATE ION (SO4g)
6h: SULFATE ION (SO4h)
6i: SULFATE ION (SO4i)
6j: SULFATE ION (SO4j)
6k: SULFATE ION (SO4k)
6l: SULFATE ION (SO4l)
6m: SULFATE ION (SO4m)
6n: SULFATE ION (SO4n)
6o: SULFATE ION (SO4o)
6p: SULFATE ION (SO4p)
6q: SULFATE ION (SO4q)
6r: SULFATE ION (SO4r)
6s: SULFATE ION (SO4s)
6t: SULFATE ION (SO4t)
7a: URIDINE-5'-DIPHOSPHATE (UDPa)
7b: URIDINE-5'-DIPHOSPHATE (UDPb)
7c: URIDINE-5'-DIPHOSPHATE (UDPc)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
BGC
3
Ligand/Ion
BETA-D-GLUCOSE
2
GAL
3
Ligand/Ion
BETA-D-GALACTOSE
3
GOL
4
Ligand/Ion
GLYCEROL
4
MN
3
Ligand/Ion
MANGANESE (II) ION
5
NAG
3
Ligand/Ion
N-ACETYL-D-GLUCOSAMINE
6
SO4
20
Ligand/Ion
SULFATE ION
7
UDP
3
Ligand/Ion
URIDINE-5'-DIPHOSPHATE
[
close Hetero Component info
]
Sites
(39, 39)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
19: CC1 (SOFTWARE)
20: CC2 (SOFTWARE)
21: CC3 (SOFTWARE)
22: CC4 (SOFTWARE)
23: CC5 (SOFTWARE)
24: CC6 (SOFTWARE)
25: CC7 (SOFTWARE)
26: CC8 (SOFTWARE)
27: CC9 (SOFTWARE)
28: DC1 (SOFTWARE)
29: DC2 (SOFTWARE)
30: DC3 (SOFTWARE)
31: DC4 (SOFTWARE)
32: DC5 (SOFTWARE)
33: DC6 (SOFTWARE)
34: DC7 (SOFTWARE)
35: DC8 (SOFTWARE)
36: DC9 (SOFTWARE)
37: EC1 (SOFTWARE)
38: EC2 (SOFTWARE)
39: EC3 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
LYS A:275 , TRP A:310 , GAL A:402 , NAG A:403 , HOH A:702
BINDING SITE FOR RESIDUE BGC A 401
02
AC2
SOFTWARE
TRP A:310 , ARG A:355 , PHE A:356 , BGC A:401 , NAG A:403
BINDING SITE FOR RESIDUE GAL A 402
03
AC3
SOFTWARE
PHE A:276 , TYR A:282 , TYR A:285 , GLY A:311 , GLY A:312 , ASP A:314 , ASP A:315 , ARG A:355 , BGC A:401 , GAL A:402 , GOL A:406 , HOH A:650
BINDING SITE FOR RESIDUE NAG A 403
04
AC4
SOFTWARE
PRO A:183 , PHE A:184 , ARG A:185 , ARG A:187 , PHE A:222 , ASP A:248 , VAL A:249 , ASP A:250 , LYS A:275 , HIS A:340 , HIS A:343 , ASP A:346 , MN A:405 , GOL A:406 , HOH A:565 , HOH A:625 , HOH A:673 , HOH A:691
BINDING SITE FOR RESIDUE UDP A 404
05
AC5
SOFTWARE
ASP A:250 , HIS A:340 , HIS A:343 , UDP A:404
BINDING SITE FOR RESIDUE MN A 405
06
AC6
SOFTWARE
TRP A:310 , GLY A:311 , GLU A:313 , ASP A:314 , NAG A:403 , UDP A:404 , HOH A:584 , HOH A:758
BINDING SITE FOR RESIDUE GOL A 406
07
AC7
SOFTWARE
GLU A:144 , PHE A:145 , ASN A:146 , ARG A:339
BINDING SITE FOR RESIDUE SO4 A 407
08
AC8
SOFTWARE
ASN A:160 , TYR A:167 , PRO A:169 , ARG A:170 , HOH A:605 , HOH A:692 , HOH A:753
BINDING SITE FOR RESIDUE SO4 A 408
09
AC9
SOFTWARE
ARG A:267 , HOH A:566 , HOH A:581
BINDING SITE FOR RESIDUE SO4 A 409
10
BC1
SOFTWARE
HIS A:343 , SER A:344
BINDING SITE FOR RESIDUE SO4 A 410
11
BC2
SOFTWARE
LYS A:162 , MET A:163
BINDING SITE FOR RESIDUE SO4 A 411
12
BC3
SOFTWARE
PHE A:318 , SER A:327 , ILE A:328 , PHE B:318 , ILE B:328
BINDING SITE FOR RESIDUE SO4 A 412
13
BC4
SOFTWARE
GAL B:402 , NAG B:403
BINDING SITE FOR RESIDUE BGC B 401
14
BC5
SOFTWARE
TRP B:310 , ARG B:355 , BGC B:401 , NAG B:403
BINDING SITE FOR RESIDUE GAL B 402
15
BC6
SOFTWARE
PHE B:276 , TYR B:282 , TYR B:285 , GLY B:311 , GLY B:312 , ASP B:314 , ASP B:315 , ARG B:355 , BGC B:401 , GAL B:402 , GOL B:406 , HOH B:504
BINDING SITE FOR RESIDUE NAG B 403
16
BC7
SOFTWARE
PRO B:183 , PHE B:184 , ARG B:185 , ARG B:187 , PHE B:222 , ASP B:248 , VAL B:249 , ASP B:250 , LYS B:275 , TRP B:310 , HIS B:340 , HIS B:343 , ASP B:346 , MN B:405 , GOL B:406 , HOH B:528 , HOH B:596 , HOH B:614
BINDING SITE FOR RESIDUE UDP B 404
17
BC8
SOFTWARE
ASP B:250 , HIS B:340 , HIS B:343 , UDP B:404
BINDING SITE FOR RESIDUE MN B 405
18
BC9
SOFTWARE
TRP B:310 , GLY B:311 , GLU B:313 , NAG B:403 , UDP B:404 , HOH B:504 , HOH B:770 , HOH B:775
BINDING SITE FOR RESIDUE GOL B 406
19
CC1
SOFTWARE
SER A:368 , ASP A:369 , ARG B:185 , ASN B:186 , ASN B:215 , HOH B:767
BINDING SITE FOR RESIDUE GOL B 407
20
CC2
SOFTWARE
GLU B:144 , PHE B:145 , ASN B:146 , ARG B:339 , ARG B:342
BINDING SITE FOR RESIDUE SO4 B 408
21
CC3
SOFTWARE
ASN B:160 , TYR B:167 , PRO B:169 , ARG B:170 , HOH B:562 , HOH B:579 , HOH B:628 , HOH B:708
BINDING SITE FOR RESIDUE SO4 B 409
22
CC4
SOFTWARE
ARG B:267 , PRO B:331 , HOH B:577
BINDING SITE FOR RESIDUE SO4 B 410
23
CC5
SOFTWARE
HIS B:343 , SER B:344
BINDING SITE FOR RESIDUE SO4 B 411
24
CC6
SOFTWARE
GLN B:233 , TYR B:376 , HOH B:575
BINDING SITE FOR RESIDUE SO4 B 412
25
CC7
SOFTWARE
PRO B:148 , VAL B:149 , ASP B:150 , TYR B:196
BINDING SITE FOR RESIDUE SO4 B 413
26
CC8
SOFTWARE
ASN B:306 , TRP B:308 , ARG B:358 , PRO B:397 , SER B:398 , HOH B:627
BINDING SITE FOR RESIDUE SO4 B 414
27
CC9
SOFTWARE
ASP B:150 , LEU B:151 , GLU B:152 , LYS B:192 , HOH B:685
BINDING SITE FOR RESIDUE SO4 B 415
28
DC1
SOFTWARE
TRP C:310 , GAL C:402 , NAG C:403 , HOH C:645
BINDING SITE FOR RESIDUE BGC C 401
29
DC2
SOFTWARE
ARG C:355 , BGC C:401 , NAG C:403
BINDING SITE FOR RESIDUE GAL C 402
30
DC3
SOFTWARE
PHE C:276 , TYR C:282 , TYR C:285 , GLY C:311 , GLY C:312 , ASP C:314 , ASP C:315 , ARG C:355 , BGC C:401 , GAL C:402 , GOL C:406
BINDING SITE FOR RESIDUE NAG C 403
31
DC4
SOFTWARE
PRO C:183 , PHE C:184 , ARG C:185 , ARG C:187 , PHE C:222 , ASP C:248 , VAL C:249 , ASP C:250 , LYS C:275 , TRP C:310 , HIS C:340 , HIS C:343 , ASP C:346 , MN C:405 , GOL C:406 , HOH C:587
BINDING SITE FOR RESIDUE UDP C 404
32
DC5
SOFTWARE
ASP C:250 , HIS C:340 , HIS C:343 , UDP C:404 , HOH C:587
BINDING SITE FOR RESIDUE MN C 405
33
DC6
SOFTWARE
ARG C:224 , TRP C:310 , GLY C:311 , GLU C:313 , ASP C:314 , NAG C:403 , UDP C:404 , HOH C:577
BINDING SITE FOR RESIDUE GOL C 406
34
DC7
SOFTWARE
ASN C:160 , TYR C:167 , PRO C:169 , ARG C:170 , HOH C:527 , HOH C:534 , HOH C:572 , HOH C:647 , HOH C:663
BINDING SITE FOR RESIDUE SO4 C 407
35
DC8
SOFTWARE
GLU C:234 , LYS C:237 , TYR C:376 , GLN C:377 , VAL C:378
BINDING SITE FOR RESIDUE SO4 C 408
36
DC9
SOFTWARE
GLU C:144 , PHE C:145 , ASN C:146 , ARG C:339
BINDING SITE FOR RESIDUE SO4 C 409
37
EC1
SOFTWARE
HIS C:343 , SER C:344
BINDING SITE FOR RESIDUE SO4 C 410
38
EC2
SOFTWARE
ARG C:267 , PRO C:331
BINDING SITE FOR RESIDUE SO4 C 411
39
EC3
SOFTWARE
PHE C:263 , SER C:264 , HOH C:512
BINDING SITE FOR RESIDUE SO4 C 412
[
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]
SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
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PROSITE Patterns/Profiles
(0, 0)
Info
All PROSITE Patterns/Profiles
;
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End label:
Sorry, no Info available
[
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Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
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Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 3)
Info
All SCOP Domains
1a: SCOP_d4eeaa_ (A:)
1b: SCOP_d4eeab_ (B:)
1c: SCOP_d4eeac_ (C:)
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Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
Nucleotide-diphospho-sugar transferases
(408)
Superfamily
:
Nucleotide-diphospho-sugar transferases
(408)
Family
:
beta 1,4 galactosyltransferase (b4GalT1)
(39)
Protein domain
:
automated matches
(19)
Human (Homo sapiens) [TaxId: 9606]
(17)
1a
d4eeaa_
A:
1b
d4eeab_
B:
1c
d4eeac_
C:
[
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]
CATH Domains
(0, 0)
Info
all CATH domains
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Sorry, no Info available
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Pfam Domains
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all PFAM domains
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Sorry, no Info available
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