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4EE4
Biol. Unit 2
Info
Asym.Unit (168 KB)
Biol.Unit 1 (56 KB)
Biol.Unit 2 (57 KB)
Biol.Unit 3 (55 KB)
Biol.Unit 4 (313 KB)
Biol.Unit 5 (159 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF HUMAN M340H-BETA-1,4-GALACTOSYLTRANSFERASE-1 (M340H-B4GAL-T1) IN COMPLEX WITH TETRASACCHARIDE FROM LACTO-N-NEOHEXOSE
Authors
:
B. Ramakrishnan, P. K. Qasba
Date
:
28 Mar 12 (Deposition) - 04 Jul 12 (Release) - 26 Mar 14 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.95
Chains
:
Asym. Unit : A,B,C
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Biol. Unit 3: C (1x)
Biol. Unit 4: A,B,C (2x)
Biol. Unit 5: A,B,C (1x)
Keywords
:
Protein-Carbohydrate Complex, Gt-A Fold, Glycosyltransferase, Transferase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
B. Ramakrishnan, E. Boeggeman, P. K. Qasba
Binding Of N-Acetylglucosamine (Glcnac) Beta 1-6-Branched Oligosaccharide Acceptors To Beta 4-Galactosyltransferase I Reveals A New Ligand Binding Mode.
J. Biol. Chem. V. 287 28666 2012
[
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Hetero Components
(6, 18)
Info
All Hetero Components
1a: BETA-D-GLUCOSE (BGCa)
1b: BETA-D-GLUCOSE (BGCb)
1c: BETA-D-GLUCOSE (BGCc)
2a: BETA-D-GALACTOSE (GALa)
2b: BETA-D-GALACTOSE (GALb)
2c: BETA-D-GALACTOSE (GALc)
3a: GLYCEROL (GOLa)
3b: GLYCEROL (GOLb)
3c: GLYCEROL (GOLc)
3d: GLYCEROL (GOLd)
4a: MANGANESE (II) ION (MNa)
4b: MANGANESE (II) ION (MNb)
4c: MANGANESE (II) ION (MNc)
5a: N-ACETYL-D-GLUCOSAMINE (NAGa)
5b: N-ACETYL-D-GLUCOSAMINE (NAGb)
5c: N-ACETYL-D-GLUCOSAMINE (NAGc)
5d: N-ACETYL-D-GLUCOSAMINE (NAGd)
5e: N-ACETYL-D-GLUCOSAMINE (NAGe)
5f: N-ACETYL-D-GLUCOSAMINE (NAGf)
6a: SULFATE ION (SO4a)
6b: SULFATE ION (SO4b)
6c: SULFATE ION (SO4c)
6d: SULFATE ION (SO4d)
6e: SULFATE ION (SO4e)
6f: SULFATE ION (SO4f)
6g: SULFATE ION (SO4g)
6h: SULFATE ION (SO4h)
6i: SULFATE ION (SO4i)
6j: SULFATE ION (SO4j)
6k: SULFATE ION (SO4k)
6l: SULFATE ION (SO4l)
6m: SULFATE ION (SO4m)
6n: SULFATE ION (SO4n)
6o: SULFATE ION (SO4o)
6p: SULFATE ION (SO4p)
6q: SULFATE ION (SO4q)
6r: SULFATE ION (SO4r)
6s: SULFATE ION (SO4s)
6t: SULFATE ION (SO4t)
6u: SULFATE ION (SO4u)
6v: SULFATE ION (SO4v)
7a: URIDINE-5'-DIPHOSPHATE (UDPa)
7b: URIDINE-5'-DIPHOSPHATE (UDPb)
7c: URIDINE-5'-DIPHOSPHATE (UDPc)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
BGC
1
Ligand/Ion
BETA-D-GLUCOSE
2
GAL
1
Ligand/Ion
BETA-D-GALACTOSE
3
GOL
2
Ligand/Ion
GLYCEROL
4
MN
-1
Ligand/Ion
MANGANESE (II) ION
5
NAG
2
Ligand/Ion
N-ACETYL-D-GLUCOSAMINE
6
SO4
11
Ligand/Ion
SULFATE ION
7
UDP
1
Ligand/Ion
URIDINE-5'-DIPHOSPHATE
[
close Hetero Component info
]
Sites
(21, 21)
Info
All Sites
01: BC1 (SOFTWARE)
02: BC2 (SOFTWARE)
03: BC6 (SOFTWARE)
04: BC7 (SOFTWARE)
05: BC8 (SOFTWARE)
06: BC9 (SOFTWARE)
07: CC1 (SOFTWARE)
08: CC2 (SOFTWARE)
09: CC3 (SOFTWARE)
10: CC4 (SOFTWARE)
11: CC5 (SOFTWARE)
12: CC6 (SOFTWARE)
13: CC7 (SOFTWARE)
14: CC8 (SOFTWARE)
15: CC9 (SOFTWARE)
16: DC1 (SOFTWARE)
17: DC2 (SOFTWARE)
18: DC3 (SOFTWARE)
19: DC4 (SOFTWARE)
20: DC5 (SOFTWARE)
21: DC6 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
BC1
SOFTWARE
THR A:375 , TYR A:376 , ASP B:393
BINDING SITE FOR RESIDUE SO4 A 410
02
BC2
SOFTWARE
PHE A:318 , SER A:327 , ILE A:328 , PHE B:318 , SER B:327 , ILE B:328
BINDING SITE FOR RESIDUE SO4 A 411
03
BC6
SOFTWARE
LYS B:275 , TRP B:310 , GAL B:402 , NAG B:403
BINDING SITE FOR RESIDUE BGC B 401
04
BC7
SOFTWARE
TRP B:310 , ARG B:355 , BGC B:401 , NAG B:403 , NAG B:404 , SO4 B:410
BINDING SITE FOR RESIDUE GAL B 402
05
BC8
SOFTWARE
PHE B:276 , TYR B:282 , TYR B:285 , GLY B:311 , GLY B:312 , ASP B:314 , ASP B:315 , ARG B:355 , BGC B:401 , GAL B:402 , SO4 B:410 , GOL B:418 , HOH B:727
BINDING SITE FOR RESIDUE NAG B 403
06
BC9
SOFTWARE
ARG B:355 , PHE B:356 , GAL B:402 , HOH B:603
BINDING SITE FOR RESIDUE NAG B 404
07
CC1
SOFTWARE
PRO B:183 , PHE B:184 , ARG B:185 , ARG B:187 , PHE B:222 , ASP B:248 , VAL B:249 , ASP B:250 , TRP B:310 , HIS B:343 , ASP B:346 , MN B:406 , SO4 B:412 , GOL B:418 , HOH B:543 , HOH B:584 , HOH B:594 , HOH B:617 , HOH B:746
BINDING SITE FOR RESIDUE UDP B 405
08
CC2
SOFTWARE
ASP B:250 , HIS B:340 , HIS B:343 , UDP B:405
BINDING SITE FOR RESIDUE MN B 406
09
CC3
SOFTWARE
HIS B:343 , SER B:344 , HOH B:586
BINDING SITE FOR RESIDUE SO4 B 407
10
CC4
SOFTWARE
GLU B:144 , PHE B:145 , ASN B:146 , ARG B:339 , ARG B:342 , HOH B:757
BINDING SITE FOR RESIDUE SO4 B 408
11
CC5
SOFTWARE
TRP B:308 , ARG B:358 , PRO B:397 , SER B:398 , HOH B:666
BINDING SITE FOR RESIDUE SO4 B 409
12
CC6
SOFTWARE
TYR B:282 , ASP B:315 , GAL B:402 , NAG B:403
BINDING SITE FOR RESIDUE SO4 B 410
13
CC7
SOFTWARE
ARG B:267 , PRO B:331 , HOH B:565 , HOH B:682
BINDING SITE FOR RESIDUE SO4 B 411
14
CC8
SOFTWARE
TRP B:310 , UDP B:405
BINDING SITE FOR RESIDUE SO4 B 412
15
CC9
SOFTWARE
ASN B:160 , TYR B:167 , PRO B:169 , ARG B:170 , HOH B:569 , HOH B:579 , HOH B:633
BINDING SITE FOR RESIDUE SO4 B 413
16
DC1
SOFTWARE
PRO B:148 , VAL B:149 , ASP B:150 , TYR B:196
BINDING SITE FOR RESIDUE SO4 B 414
17
DC2
SOFTWARE
LYS B:162 , MET B:163 , HOH B:659
BINDING SITE FOR RESIDUE SO4 B 415
18
DC3
SOFTWARE
GLY B:395 , THR B:396 , HOH B:684
BINDING SITE FOR RESIDUE SO4 B 416
19
DC4
SOFTWARE
LEU B:236 , LYS B:237 , ASP B:238 , TYR B:239 , ASP B:240
BINDING SITE FOR RESIDUE SO4 B 417
20
DC5
SOFTWARE
TRP B:310 , GLY B:311 , GLU B:313 , NAG B:403 , UDP B:405 , HOH B:508 , HOH B:727 , HOH B:736
BINDING SITE FOR RESIDUE GOL B 418
21
DC6
SOFTWARE
SER A:368 , ASP A:369 , ARG B:185 , ASN B:186 , ASN B:215 , HOH B:734 , HOH B:760
BINDING SITE FOR RESIDUE GOL B 419
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are only available for the asymmetric unit)
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PROSITE Patterns/Profiles
(, 0)
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;
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Exons
(0, 0)
Info
All Exons
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(1, 3)
Info
All SCOP Domains
1a: SCOP_d4ee4a_ (A:)
1b: SCOP_d4ee4b_ (B:)
1c: SCOP_d4ee4c_ (C:)
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)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
Nucleotide-diphospho-sugar transferases
(408)
Superfamily
:
Nucleotide-diphospho-sugar transferases
(408)
Family
:
beta 1,4 galactosyltransferase (b4GalT1)
(39)
Protein domain
:
automated matches
(19)
Human (Homo sapiens) [TaxId: 9606]
(17)
1a
d4ee4a_
A:
1b
d4ee4b_
B:
1c
d4ee4c_
C:
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CATH Domains
(0, 0)
Info
all CATH domains
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Sorry, no Info available
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Pfam Domains
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Chain B
Asymmetric Unit 1
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