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4EE3
Asym. Unit
Info
Asym.Unit (164 KB)
Biol.Unit 1 (55 KB)
Biol.Unit 2 (55 KB)
Biol.Unit 3 (54 KB)
Biol.Unit 4 (305 KB)
Biol.Unit 5 (155 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF HUMAN M340H-BETA-1,4-GALACTOSYLTRANSFERASE-1 (M340H-B4GAL-T1) IN COMPLEX WITH PENTASACCHARIDE
Authors
:
B. Ramakrishnan, P. K. Qasba
Date
:
28 Mar 12 (Deposition) - 04 Jul 12 (Release) - 02 Apr 14 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.30
Chains
:
Asym. Unit : A,B,C
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Biol. Unit 3: C (1x)
Biol. Unit 4: A,B,C (2x)
Biol. Unit 5: A,B,C (1x)
Keywords
:
Protein-Carbohydrate Complex, Gt-A Fold, Glycosyltransferase, Transferase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
B. Ramakrishnan, E. Boeggeman, P. K. Qasba
Binding Of N-Acetylglucosamine (Glcnac) Beta 1-6-Branched Oligosaccharide Acceptors To Beta 4-Galactosyltransferase I Reveals A New Ligand Binding Mode.
J. Biol. Chem. V. 287 28666 2012
[
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Hetero Components
(7, 42)
Info
All Hetero Components
1a: BETA-D-GLUCOSE (BGCa)
1b: BETA-D-GLUCOSE (BGCb)
1c: BETA-D-GLUCOSE (BGCc)
2a: BETA-D-GALACTOSE (GALa)
2b: BETA-D-GALACTOSE (GALb)
2c: BETA-D-GALACTOSE (GALc)
2d: BETA-D-GALACTOSE (GALd)
2e: BETA-D-GALACTOSE (GALe)
2f: BETA-D-GALACTOSE (GALf)
3a: GLYCEROL (GOLa)
3b: GLYCEROL (GOLb)
3c: GLYCEROL (GOLc)
4a: MANGANESE (II) ION (MNa)
4b: MANGANESE (II) ION (MNb)
4c: MANGANESE (II) ION (MNc)
5a: N-ACETYL-D-GLUCOSAMINE (NAGa)
5b: N-ACETYL-D-GLUCOSAMINE (NAGb)
5c: N-ACETYL-D-GLUCOSAMINE (NAGc)
5d: N-ACETYL-D-GLUCOSAMINE (NAGd)
5e: N-ACETYL-D-GLUCOSAMINE (NAGe)
5f: N-ACETYL-D-GLUCOSAMINE (NAGf)
6a: SULFATE ION (SO4a)
6b: SULFATE ION (SO4b)
6c: SULFATE ION (SO4c)
6d: SULFATE ION (SO4d)
6e: SULFATE ION (SO4e)
6f: SULFATE ION (SO4f)
6g: SULFATE ION (SO4g)
6h: SULFATE ION (SO4h)
6i: SULFATE ION (SO4i)
6j: SULFATE ION (SO4j)
6k: SULFATE ION (SO4k)
6l: SULFATE ION (SO4l)
6m: SULFATE ION (SO4m)
6n: SULFATE ION (SO4n)
6o: SULFATE ION (SO4o)
6p: SULFATE ION (SO4p)
6q: SULFATE ION (SO4q)
6r: SULFATE ION (SO4r)
7a: 6-AMINOHEXYL-URIDINE-C1,5'-DIPHOSP... (UDHa)
7b: 6-AMINOHEXYL-URIDINE-C1,5'-DIPHOSP... (UDHb)
7c: 6-AMINOHEXYL-URIDINE-C1,5'-DIPHOSP... (UDHc)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
BGC
3
Ligand/Ion
BETA-D-GLUCOSE
2
GAL
6
Ligand/Ion
BETA-D-GALACTOSE
3
GOL
3
Ligand/Ion
GLYCEROL
4
MN
3
Ligand/Ion
MANGANESE (II) ION
5
NAG
6
Ligand/Ion
N-ACETYL-D-GLUCOSAMINE
6
SO4
18
Ligand/Ion
SULFATE ION
7
UDH
3
Ligand/Ion
6-AMINOHEXYL-URIDINE-C1,5'-DIPHOSPHATE
[
close Hetero Component info
]
Sites
(30, 30)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
19: CC1 (SOFTWARE)
20: CC2 (SOFTWARE)
21: CC3 (SOFTWARE)
22: CC4 (SOFTWARE)
23: CC5 (SOFTWARE)
24: CC6 (SOFTWARE)
25: CC7 (SOFTWARE)
26: CC8 (SOFTWARE)
27: CC9 (SOFTWARE)
28: DC1 (SOFTWARE)
29: DC2 (SOFTWARE)
30: DC3 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
PRO A:183 , PHE A:184 , ARG A:185 , ARG A:187 , PHE A:222 , ASP A:248 , VAL A:249 , ASP A:250 , LYS A:275 , TRP A:310 , HIS A:340 , HIS A:343 , ASP A:346 , MN A:407 , HOH A:522 , HOH A:568 , HOH A:572 , HOH A:586 , HOH A:627
BINDING SITE FOR RESIDUE UDH A 406
02
AC2
SOFTWARE
ASP A:250 , HIS A:340 , HIS A:343 , UDH A:406 , HOH A:522
BINDING SITE FOR RESIDUE MN A 407
03
AC3
SOFTWARE
GLU A:144 , PHE A:145 , ASN A:146 , ARG A:339
BINDING SITE FOR RESIDUE SO4 A 408
04
AC4
SOFTWARE
ASN A:160 , TYR A:167 , PRO A:169 , ARG A:170 , HOH A:602 , HOH A:603 , HOH A:669
BINDING SITE FOR RESIDUE SO4 A 409
05
AC5
SOFTWARE
THR A:375 , TYR A:376 , HOH A:671 , ASP B:393 , HOH B:617
BINDING SITE FOR RESIDUE SO4 A 410
06
AC6
SOFTWARE
PHE A:263 , ARG A:267 , HOH A:647
BINDING SITE FOR RESIDUE SO4 A 411
07
AC7
SOFTWARE
SER A:368 , ARG B:185 , ASN B:186 , ASN B:215
BINDING SITE FOR RESIDUE SO4 A 412
08
AC8
SOFTWARE
PHE A:263 , SER A:264
BINDING SITE FOR RESIDUE SO4 A 413
09
AC9
SOFTWARE
HIS A:343 , SER A:344
BINDING SITE FOR RESIDUE SO4 A 414
10
BC1
SOFTWARE
PHE A:318 , SER A:327 , ILE A:328 , PHE B:318 , SER B:327 , ILE B:328
BINDING SITE FOR RESIDUE SO4 A 415
11
BC2
SOFTWARE
ARG A:224 , ASP A:248 , GLY A:288 , TRP A:310 , GLY A:311 , GLU A:313 , NAG A:403 , HOH A:571 , HOH A:635
BINDING SITE FOR RESIDUE GOL A 416
12
BC3
SOFTWARE
PRO B:183 , PHE B:184 , ARG B:185 , ARG B:187 , PHE B:222 , ASP B:248 , VAL B:249 , ASP B:250 , LYS B:275 , TRP B:310 , HIS B:340 , HIS B:343 , ASP B:346 , MN B:407 , GOL B:415 , HOH B:529 , HOH B:556 , HOH B:559 , HOH B:570 , HOH B:616
BINDING SITE FOR RESIDUE UDH B 406
13
BC4
SOFTWARE
ASP B:250 , HIS B:340 , HIS B:343 , UDH B:406 , HOH B:559
BINDING SITE FOR RESIDUE MN B 407
14
BC5
SOFTWARE
ASN B:160 , TYR B:167 , PRO B:169 , ARG B:170 , HOH B:585 , HOH B:587 , HOH B:603
BINDING SITE FOR RESIDUE SO4 B 408
15
BC6
SOFTWARE
GLU B:144 , PHE B:145 , ARG B:339
BINDING SITE FOR RESIDUE SO4 B 409
16
BC7
SOFTWARE
ASN B:306 , TRP B:308 , ARG B:358 , SER B:398
BINDING SITE FOR RESIDUE SO4 B 410
17
BC8
SOFTWARE
HIS B:343 , SER B:344 , HOH B:598
BINDING SITE FOR RESIDUE SO4 B 411
18
BC9
SOFTWARE
ARG B:267 , PRO B:331
BINDING SITE FOR RESIDUE SO4 B 412
19
CC1
SOFTWARE
ASP B:150 , LEU B:151 , LYS B:192 , HOH B:579
BINDING SITE FOR RESIDUE SO4 B 413
20
CC2
SOFTWARE
ARG B:224 , TRP B:310 , GLY B:311 , GLU B:313 , ASP B:314 , NAG B:403 , UDH B:406 , HOH B:650 , HOH B:668
BINDING SITE FOR RESIDUE GOL B 415
21
CC3
SOFTWARE
PRO C:183 , PHE C:184 , ARG C:185 , ARG C:187 , PHE C:222 , ASP C:248 , VAL C:249 , ASP C:250 , LYS C:275 , TRP C:310 , HIS C:340 , ARG C:342 , HIS C:343 , ASP C:346 , MN C:407 , GOL C:412 , HOH C:524 , HOH C:550 , HOH C:599 , HOH C:605 , HOH C:650
BINDING SITE FOR RESIDUE UDH C 406
22
CC4
SOFTWARE
ASP C:250 , HIS C:340 , HIS C:343 , UDH C:406 , HOH C:524
BINDING SITE FOR RESIDUE MN C 407
23
CC5
SOFTWARE
ASN C:160 , TYR C:167 , PRO C:169 , ARG C:170 , HOH C:519 , HOH C:602 , HOH C:625
BINDING SITE FOR RESIDUE SO4 C 408
24
CC6
SOFTWARE
PHE C:263 , SER C:264
BINDING SITE FOR RESIDUE SO4 C 409
25
CC7
SOFTWARE
ASN C:306 , TRP C:308 , PRO C:397 , SER C:398
BINDING SITE FOR RESIDUE SO4 C 410
26
CC8
SOFTWARE
GLU C:144 , PHE C:145 , ASN C:146 , ARG C:339
BINDING SITE FOR RESIDUE SO4 C 411
27
CC9
SOFTWARE
ASP C:248 , GLY C:288 , TRP C:310 , GLY C:311 , GLU C:313 , NAG C:403 , UDH C:406 , HOH C:572
BINDING SITE FOR RESIDUE GOL C 412
28
DC1
SOFTWARE
PHE A:276 , TYR A:282 , TYR A:285 , TRP A:310 , GLY A:311 , GLY A:312 , ASP A:314 , ASP A:315 , ARG A:355 , PHE A:356 , GOL A:416 , HOH A:586
BINDING SITE FOR CHAIN A OF POLYSACCHARIDE RESIDUES 401 TO 405
29
DC2
SOFTWARE
PHE B:276 , TYR B:282 , TYR B:285 , TRP B:310 , GLY B:311 , GLY B:312 , ASP B:314 , ASP B:315 , ARG B:355 , PHE B:356 , GOL B:415 , HOH B:542 , HOH B:666
BINDING SITE FOR CHAIN B OF POLYSACCHARIDE RESIDUES 401 TO 405
30
DC3
SOFTWARE
PHE C:276 , TYR C:282 , TYR C:285 , TRP C:310 , GLY C:311 , GLY C:312 , ASP C:314 , ASP C:315 , ARG C:355 , GOL C:412 , HOH C:550 , HOH C:564 , HOH C:580 , HOH C:615
BINDING SITE FOR CHAIN C OF POLYSACCHARIDE RESIDUES 401 TO 405
[
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
View:
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Sorry, no Info available
[
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PROSITE Patterns/Profiles
(0, 0)
Info
All PROSITE Patterns/Profiles
;
View:
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End label:
Sorry, no Info available
[
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]
Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 3)
Info
All SCOP Domains
1a: SCOP_d4ee3a_ (A:)
1b: SCOP_d4ee3b_ (B:)
1c: SCOP_d4ee3c_ (C:)
View:
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Classes
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(
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Folds
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(
)
Superfamilies
(
)
(
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(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
Nucleotide-diphospho-sugar transferases
(408)
Superfamily
:
Nucleotide-diphospho-sugar transferases
(408)
Family
:
beta 1,4 galactosyltransferase (b4GalT1)
(39)
Protein domain
:
automated matches
(19)
Human (Homo sapiens) [TaxId: 9606]
(17)
1a
d4ee3a_
A:
1b
d4ee3b_
B:
1c
d4ee3c_
C:
[
close SCOP info
]
CATH Domains
(0, 0)
Info
all CATH domains
View:
Select:
Label:
Sorry, no Info available
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Pfam Domains
(0, 0)
Info
all PFAM domains
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Label:
Sorry, no Info available
[
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Asym.Unit (164 KB)
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