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4E7R
Biol. Unit 1
Info
Asym.Unit (199 KB)
Biol.Unit 1 (97 KB)
Biol.Unit 2 (97 KB)
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(1)
Title
:
THROMBIN IN COMPLEX WITH 3-AMIDINOPHENYLALANINE INHIBITOR
Authors
:
E. Ruehmann, A. Heine, G. Klebe
Date
:
19 Mar 12 (Deposition) - 20 Jun 12 (Release) - 17 Aug 16 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.25
Chains
:
Asym. Unit : G,H,I,J,L,M
Biol. Unit 1: H,I,L (1x)
Biol. Unit 2: G,J,M (1x)
Keywords
:
Hydrolase-Hydrolase Inhibitor Complex, Serine Protease, Kringle, Hydrolase, Blood Coagulation, Blood Clotting, Convertion Of Fibrinogen To Fibrin, Blood Clotting Inhibitor, Thrombin Inhibitor, Glycosylation, Blood
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Reference
:
M. Hammami, E. Ruehmann, M. Mauerer, A. Heine, M. Guetschow, G. Klebe, T. Steinmetzer
New 3-Amidinophenylalanine-Derived Inhibitors Of Matriptase
Medchemcomm V. 3 807 2012
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Hetero Components
(5, 6)
Info
All Hetero Components
1a: 3-[(2S)-3-[4-(2-AMINOETHYL)PIPERID... (0NWa)
1b: 3-[(2S)-3-[4-(2-AMINOETHYL)PIPERID... (0NWb)
2a: GLYCEROL (GOLa)
2b: GLYCEROL (GOLb)
2c: GLYCEROL (GOLc)
4a: N-ACETYL-D-GLUCOSAMINE (NAGa)
4b: N-ACETYL-D-GLUCOSAMINE (NAGb)
3a: SODIUM ION (NAa)
3b: SODIUM ION (NAb)
3c: SODIUM ION (NAc)
3d: SODIUM ION (NAd)
5a: PHOSPHATE ION (PO4a)
5b: PHOSPHATE ION (PO4b)
6a: O-SULFO-L-TYROSINE (TYSa)
6b: O-SULFO-L-TYROSINE (TYSb)
View:
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No.
Name
Count
Type
Full Name
1
0NW
1
Ligand/Ion
3-[(2S)-3-[4-(2-AMINOETHYL)PIPERIDIN-1-YL]-2-{[(2',4'-DICHLOROBIPHENYL-3-YL)SULFONYL]AMINO}-3-OXOPROPYL]BENZENECARBOXIMIDAMIDE
2
GOL
2
Ligand/Ion
GLYCEROL
3
NA
-1
Ligand/Ion
SODIUM ION
4
NAG
1
Ligand/Ion
N-ACETYL-D-GLUCOSAMINE
5
PO4
1
Ligand/Ion
PHOSPHATE ION
6
TYS
1
Mod. Amino Acid
O-SULFO-L-TYROSINE
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Sites
(8, 8)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
5: AC5 (SOFTWARE)
6: AC6 (SOFTWARE)
7: AC7 (SOFTWARE)
8: BC1 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
ASN H:60G
BINDING SITE FOR RESIDUE NAG H 301
2
AC2
SOFTWARE
HIS H:57 , ASN H:98 , LEU H:99 , ASP H:189 , ALA H:190 , GLU H:192 , SER H:195 , VAL H:213 , TRP H:215 , GLY H:216 , GLU H:217 , GLY H:219 , GLY H:226 , HOH H:414
BINDING SITE FOR RESIDUE 0NW H 302
3
AC3
SOFTWARE
PHE G:1204A , LYS H:169 , THR H:172 , HOH H:475 , HOH H:496 , HOH H:497
BINDING SITE FOR RESIDUE NA H 303
4
AC4
SOFTWARE
ARG H:221A , LYS H:224 , HOH H:420 , HOH H:426 , HOH H:451 , HOH H:504
BINDING SITE FOR RESIDUE NA H 304
5
AC5
SOFTWARE
ASN H:95 , ASP H:100 , ARG H:101 , ARG H:175
BINDING SITE FOR RESIDUE PO4 H 305
6
AC6
SOFTWARE
VAL H:163 , GLU H:164 , ARG H:165 , CYS H:168 , PHE H:181 , CYS H:182 , GOL H:307 , HOH H:436
BINDING SITE FOR RESIDUE GOL H 306
7
AC7
SOFTWARE
ARG H:165 , HIS H:230 , GOL H:306 , HOH H:461
BINDING SITE FOR RESIDUE GOL H 307
8
BC1
SOFTWARE
LYS G:1169 , THR G:1172 , HOH G:1464 , HOH G:1505 , PHE H:204A
BINDING SITE FOR RESIDUE NA G 1303
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are only available for the asymmetric unit)
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PROSITE Patterns/Profiles
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Exons
(0, 0)
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
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SCOP Domains
(0, 0)
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CATH Domains
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Pfam Domains
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Asymmetric Unit 1
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Show PDB file:
Asym.Unit (199 KB)
Header - Asym.Unit
Biol.Unit 1 (97 KB)
Header - Biol.Unit 1
Biol.Unit 2 (97 KB)
Header - Biol.Unit 2
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