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4E6P
Biol. Unit 1
Info
Asym.Unit (337 KB)
Biol.Unit 1 (326 KB)
Biol.Unit 2 (165 KB)
Biol.Unit 3 (166 KB)
Biol.Unit 4 (166 KB)
Biol.Unit 5 (165 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF A PROBABLE SORBITOL DEHYDROGENASE (TARGET PSI-012078) FROM SINORHIZOBIUM MELILOTI 1021
Authors
:
P. R. Kumar, S. C. Almo, New York Structural Genomics Research Con (Nysgrc)
Date
:
15 Mar 12 (Deposition) - 11 Apr 12 (Release) - 11 Apr 12 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.10
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A,B,C,D (1x)
Biol. Unit 2: A,D (1x)
Biol. Unit 3: A,B (1x)
Biol. Unit 4: B,C (1x)
Biol. Unit 5: C,D (1x)
Keywords
:
Nad(P)-Binding, Structural Genomics, Psi-Biology, New York Structural Genomics Research Consortium (Nysgrc), Oxidoreductase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
P. R. Kumar, N. Banu, R. Bhosle, J. Bonanno, S. Chamala, S. Chowdhury, A. Gizzi, S. Glen, J. Hammonds, B. Hillerich, J. D. Love, B. Matikainen R. Seidel, R. Toro, W. Zencheck, S. C. Almo
Crystal Structure Of A Probable Sorbitol Dehydrogenase From Sinorhizobium Meliloti 1021
To Be Published
[
close entry info
]
Hetero Components
(2, 41)
Info
All Hetero Components
1a: 1,2-ETHANEDIOL (EDOa)
1b: 1,2-ETHANEDIOL (EDOb)
1c: 1,2-ETHANEDIOL (EDOc)
1d: 1,2-ETHANEDIOL (EDOd)
1e: 1,2-ETHANEDIOL (EDOe)
1f: 1,2-ETHANEDIOL (EDOf)
1g: 1,2-ETHANEDIOL (EDOg)
1h: 1,2-ETHANEDIOL (EDOh)
1i: 1,2-ETHANEDIOL (EDOi)
1j: 1,2-ETHANEDIOL (EDOj)
1k: 1,2-ETHANEDIOL (EDOk)
1l: 1,2-ETHANEDIOL (EDOl)
1m: 1,2-ETHANEDIOL (EDOm)
1n: 1,2-ETHANEDIOL (EDOn)
1o: 1,2-ETHANEDIOL (EDOo)
1p: 1,2-ETHANEDIOL (EDOp)
1q: 1,2-ETHANEDIOL (EDOq)
2a: SELENOMETHIONINE (MSEa)
2b: SELENOMETHIONINE (MSEb)
2c: SELENOMETHIONINE (MSEc)
2d: SELENOMETHIONINE (MSEd)
2e: SELENOMETHIONINE (MSEe)
2f: SELENOMETHIONINE (MSEf)
2g: SELENOMETHIONINE (MSEg)
2h: SELENOMETHIONINE (MSEh)
2i: SELENOMETHIONINE (MSEi)
2j: SELENOMETHIONINE (MSEj)
2k: SELENOMETHIONINE (MSEk)
2l: SELENOMETHIONINE (MSEl)
2m: SELENOMETHIONINE (MSEm)
2n: SELENOMETHIONINE (MSEn)
2o: SELENOMETHIONINE (MSEo)
2p: SELENOMETHIONINE (MSEp)
2q: SELENOMETHIONINE (MSEq)
2r: SELENOMETHIONINE (MSEr)
2s: SELENOMETHIONINE (MSEs)
2t: SELENOMETHIONINE (MSEt)
2u: SELENOMETHIONINE (MSEu)
2v: SELENOMETHIONINE (MSEv)
2w: SELENOMETHIONINE (MSEw)
2x: SELENOMETHIONINE (MSEx)
3a: SODIUM ION (NAa)
3b: SODIUM ION (NAb)
3c: SODIUM ION (NAc)
3d: SODIUM ION (NAd)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
EDO
17
Ligand/Ion
1,2-ETHANEDIOL
2
MSE
24
Mod. Amino Acid
SELENOMETHIONINE
3
NA
-1
Ligand/Ion
SODIUM ION
[
close Hetero Component info
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Sites
(21, 21)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
19: CC1 (SOFTWARE)
20: CC2 (SOFTWARE)
21: CC3 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
ALA A:47 , GLY A:51 , ALA A:54 , HOH A:444 , HOH A:457 , HOH A:468
BINDING SITE FOR RESIDUE NA A 301
02
AC2
SOFTWARE
GLN A:141 , ALA A:142 , ARG A:145 , GLU A:147
BINDING SITE FOR RESIDUE EDO A 302
03
AC3
SOFTWARE
LYS A:2 , ARG A:3 , ARG D:3
BINDING SITE FOR RESIDUE EDO A 303
04
AC4
SOFTWARE
ALA B:47 , GLY B:51 , ALA B:54 , HOH B:421 , HOH B:479 , HOH B:495
BINDING SITE FOR RESIDUE NA B 301
05
AC5
SOFTWARE
GLN B:141 , ALA B:142 , ARG B:145 , GLU B:147
BINDING SITE FOR RESIDUE EDO B 302
06
AC6
SOFTWARE
TYR A:104 , PHE A:108 , ALA A:109 , TYR B:104 , PHE B:108 , HOH B:503 , HOH B:508
BINDING SITE FOR RESIDUE EDO B 303
07
AC7
SOFTWARE
LYS B:7 , ASP B:82 , GLY B:133 , HOH B:445 , HOH B:496
BINDING SITE FOR RESIDUE EDO B 304
08
AC8
SOFTWARE
GLY A:143 , ARG A:144 , ARG A:145 , SER B:162 , GLN B:165 , EDO B:306 , HOH B:424 , HOH B:451 , HOH B:452
BINDING SITE FOR RESIDUE EDO B 305
09
AC9
SOFTWARE
GLN A:165 , GLY B:143 , ARG B:144 , ARG B:145 , EDO B:305 , HOH B:411 , HOH B:451 , HOH B:452
BINDING SITE FOR RESIDUE EDO B 306
10
BC1
SOFTWARE
VAL B:75 , GLN B:125
BINDING SITE FOR RESIDUE EDO B 307
11
BC2
SOFTWARE
ALA C:47 , GLY C:51 , ALA C:54 , HOH C:492 , HOH C:497 , HOH C:512
BINDING SITE FOR RESIDUE NA C 301
12
BC3
SOFTWARE
TYR C:104 , PHE C:108 , ALA C:109 , HOH C:469 , TYR D:104 , GLU D:105 , PHE D:108
BINDING SITE FOR RESIDUE EDO C 302
13
BC4
SOFTWARE
ARG C:16 , ASP C:39 , GLU C:41 , ARG C:42
BINDING SITE FOR RESIDUE EDO C 303
14
BC5
SOFTWARE
LYS C:7 , ASP C:82 , GLY C:133 , HOH C:485 , HOH C:490
BINDING SITE FOR RESIDUE EDO C 304
15
BC6
SOFTWARE
SER C:8 , ALA C:78 , GLY C:80 , LEU C:81 , ASP C:82 , GLN C:129 , ARG C:131
BINDING SITE FOR RESIDUE EDO C 305
16
BC7
SOFTWARE
ALA D:47 , GLY D:51 , ALA D:54 , EDO D:304 , HOH D:415
BINDING SITE FOR RESIDUE NA D 301
17
BC8
SOFTWARE
ASP D:92 , LEU D:93 , ALA D:94 , ILE D:99 , LEU D:149 , VAL D:150 , ALA D:151 , ILE D:152 , TYR D:153 , HOH D:426
BINDING SITE FOR RESIDUE EDO D 302
18
BC9
SOFTWARE
PRO D:218 , GLY D:253 , ASN D:254 , TRP D:255 , HOH D:437
BINDING SITE FOR RESIDUE EDO D 303
19
CC1
SOFTWARE
GLY B:6 , ALA D:47 , PRO D:52 , ALA D:54 , NA D:301 , HOH D:444
BINDING SITE FOR RESIDUE EDO D 304
20
CC2
SOFTWARE
ILE C:99 , ARG C:101 , GLN D:64 , GLN D:120 , ARG D:124
BINDING SITE FOR RESIDUE EDO D 305
21
CC3
SOFTWARE
SER C:162 , GLN C:165 , HOH C:418 , GLY D:143 , ARG D:144 , ARG D:145 , HOH D:448
BINDING SITE FOR RESIDUE EDO D 306
[
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]
SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
View:
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PROSITE Patterns/Profiles
(, 0)
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;
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End label:
Sorry, no Info available
[
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Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(1, 4)
Info
All SCOP Domains
1a: SCOP_d4e6pa_ (A:)
1b: SCOP_d4e6pb_ (B:)
1c: SCOP_d4e6pc_ (C:)
1d: SCOP_d4e6pd_ (D:)
View:
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(
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)
(
)
Families
(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
NAD(P)-binding Rossmann-fold domains
(1604)
Superfamily
:
NAD(P)-binding Rossmann-fold domains
(1604)
Family
:
Tyrosine-dependent oxidoreductases
(503)
Protein domain
:
automated matches
(114)
Sinorhizobium meliloti [TaxId: 266834]
(1)
1a
d4e6pa_
A:
1b
d4e6pb_
B:
1c
d4e6pc_
C:
1d
d4e6pd_
D:
[
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]
CATH Domains
(0, 0)
Info
all CATH domains
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Sorry, no Info available
[
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Pfam Domains
(0, 0)
Info
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Sorry, no Info available
[
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Asymmetric Unit 1
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select chains 'A' and 'C'
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select all 'ALA' residues (Alanines) in chain 'A'
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select residue range 5 to 10 in all chains
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select residue range 5 to 10 in chain 'A'
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select non-helix/non-sheet protein parts
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Asym.Unit (337 KB)
Header - Asym.Unit
Biol.Unit 1 (326 KB)
Header - Biol.Unit 1
Biol.Unit 2 (165 KB)
Header - Biol.Unit 2
Biol.Unit 3 (166 KB)
Header - Biol.Unit 3
Biol.Unit 4 (166 KB)
Header - Biol.Unit 4
Biol.Unit 5 (165 KB)
Header - Biol.Unit 5
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