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4E6M
Asym. Unit
Info
Asym.Unit (1.1 MB)
Biol.Unit 1, α-C (1.0 MB)
Biol.Unit 1 (1.0 MB)
Biol.Unit 2 (277 KB)
Biol.Unit 3 (276 KB)
Biol.Unit 4 (274 KB)
Biol.Unit 5 (276 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF PUTATIVE DEHYDRATASE PROTEIN FROM SALMONELLA ENTERICA SUBSP. ENTERICA SEROVAR TYPHIMURIUM (SALMONELLA TYPHIMURIUM)
Authors
:
V. N. Malashkevich, R. Bhosle, R. Toro, B. Hillerich, A. Gizzi, S. Garfo A. Kar, M. K. Chan, J. Lafluer, H. Patel, B. Matikainen, S. Chamala, S. L A. Celikgil, G. Villegas, B. Evans, W. Zenchek, J. Love, A. Fiser, K. Kh R. Seidel, J. B. Bonanno, S. C. Almo, New York Structural Genomics Consortium (Nysgrc)
Date
:
15 Mar 12 (Deposition) - 04 Apr 12 (Release) - 09 May 12 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.80
Chains
:
Asym. Unit : A,B,C,D,E,F,G,H
Biol. Unit 1: A,B,C,D,E,F,G,H (1x)
Biol. Unit 2: A,B (1x)
Biol. Unit 3: C,D (1x)
Biol. Unit 4: E,F (1x)
Biol. Unit 5: G,H (1x)
Keywords
:
Structural Genomics, Protein Structure Initiative, New York Structural Genomics Research Consortium, Nysgrc, Psi-Biology, Unknown Function
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
V. N. Malashkevich, R. Bhosle, R. Toro, B. Hillerich, A. Gizzi, S. Garforth, A. Kar, M. K. Chan, J. Lafluer, H. Patel, B. Matikainen, S. Chamala, S. Lim, A. Celikgil, G. Villegas, B. Evans, W. Zenchek, J. Love, A. Fiser, K. Khafizov, R. Seidel, J. B. Bonanno, S. C. Almo
Crystal Structure Of Putative Dehydratase Protein From Salmonella Enterica Subsp. Enterica Serovar Typhimurium (Salmonella Typhimurium)
To Be Published
[
close entry info
]
Hetero Components
(3, 26)
Info
All Hetero Components
1a: 4-(2-HYDROXYETHYL)-1-PIPERAZINE ET... (EPEa)
1b: 4-(2-HYDROXYETHYL)-1-PIPERAZINE ET... (EPEb)
1c: 4-(2-HYDROXYETHYL)-1-PIPERAZINE ET... (EPEc)
1d: 4-(2-HYDROXYETHYL)-1-PIPERAZINE ET... (EPEd)
1e: 4-(2-HYDROXYETHYL)-1-PIPERAZINE ET... (EPEe)
1f: 4-(2-HYDROXYETHYL)-1-PIPERAZINE ET... (EPEf)
1g: 4-(2-HYDROXYETHYL)-1-PIPERAZINE ET... (EPEg)
1h: 4-(2-HYDROXYETHYL)-1-PIPERAZINE ET... (EPEh)
2a: MAGNESIUM ION (MGa)
2b: MAGNESIUM ION (MGb)
2c: MAGNESIUM ION (MGc)
2d: MAGNESIUM ION (MGd)
2e: MAGNESIUM ION (MGe)
2f: MAGNESIUM ION (MGf)
2g: MAGNESIUM ION (MGg)
2h: MAGNESIUM ION (MGh)
3a: (4S)-2-METHYL-2,4-PENTANEDIOL (MPDa)
3b: (4S)-2-METHYL-2,4-PENTANEDIOL (MPDb)
3c: (4S)-2-METHYL-2,4-PENTANEDIOL (MPDc)
3d: (4S)-2-METHYL-2,4-PENTANEDIOL (MPDd)
3e: (4S)-2-METHYL-2,4-PENTANEDIOL (MPDe)
3f: (4S)-2-METHYL-2,4-PENTANEDIOL (MPDf)
3g: (4S)-2-METHYL-2,4-PENTANEDIOL (MPDg)
3h: (4S)-2-METHYL-2,4-PENTANEDIOL (MPDh)
3i: (4S)-2-METHYL-2,4-PENTANEDIOL (MPDi)
3j: (4S)-2-METHYL-2,4-PENTANEDIOL (MPDj)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
EPE
8
Ligand/Ion
4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID
2
MG
8
Ligand/Ion
MAGNESIUM ION
3
MPD
10
Ligand/Ion
(4S)-2-METHYL-2,4-PENTANEDIOL
[
close Hetero Component info
]
Sites
(26, 26)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
19: CC1 (SOFTWARE)
20: CC2 (SOFTWARE)
21: CC3 (SOFTWARE)
22: CC4 (SOFTWARE)
23: CC5 (SOFTWARE)
24: CC6 (SOFTWARE)
25: CC7 (SOFTWARE)
26: CC8 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
GLU A:222 , GLU A:248 , GLU A:274 , HOH A:754 , HOH A:772 , HOH A:773
BINDING SITE FOR RESIDUE MG A 501
02
AC2
SOFTWARE
TYR A:23 , TYR A:46 , PHE A:137 , GLU A:173 , HIS A:224 , HIS A:351 , HOH A:775
BINDING SITE FOR RESIDUE MPD A 502
03
AC3
SOFTWARE
TRP A:105 , LEU A:119 , LEU A:120 , LYS A:308 , ASP A:312 , HOH A:640 , GLU F:73 , LEU F:119 , HOH F:829 , HOH F:913
BINDING SITE FOR RESIDUE MPD A 503
04
AC4
SOFTWARE
GLU B:222 , GLU B:248 , GLU B:274 , HOH B:883 , HOH B:944 , HOH B:972
BINDING SITE FOR RESIDUE MG B 700
05
AC5
SOFTWARE
TYR B:46 , PHE B:137 , GLU B:173 , HIS B:224 , CYS B:326 , HIS B:351 , HOH B:965
BINDING SITE FOR RESIDUE MPD B 701
06
AC6
SOFTWARE
GLU A:211 , ALA A:212 , MET A:213 , GLY A:214 , GLU B:211 , ALA B:212 , MET B:213
BINDING SITE FOR RESIDUE EPE B 702
07
AC7
SOFTWARE
GLN A:184 , ASN A:185 , ARG A:186 , LEU B:63 , GLU B:67 , ASP B:68 , ASN B:71 , ILE B:75 , PHE B:78
BINDING SITE FOR RESIDUE EPE B 703
08
AC8
SOFTWARE
GLU C:222 , GLU C:248 , GLU C:274 , HOH C:722 , HOH C:724 , HOH C:745
BINDING SITE FOR RESIDUE MG C 501
09
AC9
SOFTWARE
GLU C:173 , HIS C:224 , HIS C:351 , PHE D:84
BINDING SITE FOR RESIDUE MPD C 502
10
BC1
SOFTWARE
LEU C:63 , GLU C:67 , ASP C:68 , ASN C:71 , ILE C:75 , PHE C:78 , HOH C:664 , GLN D:184 , ASN D:185
BINDING SITE FOR RESIDUE EPE C 503
11
BC2
SOFTWARE
GLU D:222 , GLU D:248 , GLU D:274 , HOH D:696 , HOH D:752 , HOH D:772
BINDING SITE FOR RESIDUE MG D 501
12
BC3
SOFTWARE
PHE C:84 , TYR D:46 , PHE D:137 , GLU D:173 , HIS D:224 , CYS D:326 , HIS D:351
BINDING SITE FOR RESIDUE MPD D 502
13
BC4
SOFTWARE
GLN C:184 , ASN C:185 , ARG C:186 , LEU D:63 , ASP D:68 , ASN D:71 , ILE D:75 , PHE D:78
BINDING SITE FOR RESIDUE EPE D 503
14
BC5
SOFTWARE
GLU E:222 , GLU E:248 , GLU E:274 , HOH E:690 , HOH E:739 , HOH E:757
BINDING SITE FOR RESIDUE MG E 501
15
BC6
SOFTWARE
TYR E:23 , TYR E:46 , PHE E:137 , HIS E:224 , HIS E:351 , PHE F:84
BINDING SITE FOR RESIDUE MPD E 502
16
BC7
SOFTWARE
GLU E:67 , ASP E:68 , ASN E:71 , LYS E:74 , ILE E:75 , PHE E:78 , PHE F:183 , GLN F:184 , ASN F:185 , ARG F:186
BINDING SITE FOR RESIDUE EPE E 503
17
BC8
SOFTWARE
GLN E:184 , ASN E:185 , ARG E:186 , HOH E:882 , GLU F:67 , ASP F:68 , ASN F:71 , PHE F:78 , HOH F:937
BINDING SITE FOR RESIDUE EPE E 504
18
BC9
SOFTWARE
GLU F:222 , GLU F:248 , GLU F:274 , HOH F:832 , HOH F:901 , HOH F:956
BINDING SITE FOR RESIDUE MG F 700
19
CC1
SOFTWARE
PHE E:84 , TYR F:46 , PHE F:137 , GLU F:173 , HIS F:224 , HIS F:351
BINDING SITE FOR RESIDUE MPD F 701
20
CC2
SOFTWARE
GLU G:222 , GLU G:248 , GLU G:274 , HOH G:636 , HOH G:693 , HOH G:728
BINDING SITE FOR RESIDUE MG G 501
21
CC3
SOFTWARE
TYR G:46 , GLN G:134 , PHE G:137 , GLU G:173 , HIS G:224 , HIS G:351 , PHE H:84
BINDING SITE FOR RESIDUE MPD G 502
22
CC4
SOFTWARE
GLU G:67 , ASP G:68 , ASN G:71 , ILE G:75 , PHE G:78 , HOH G:743 , HOH G:776 , GLN H:184 , ASN H:185 , ARG H:186
BINDING SITE FOR RESIDUE EPE G 503
23
CC5
SOFTWARE
LYS C:308 , ASP C:312 , HOH C:631 , TRP H:105 , LEU H:119 , LYS H:308 , ASP H:312 , HOH H:716
BINDING SITE FOR RESIDUE MPD H 501
24
CC6
SOFTWARE
GLU H:222 , GLU H:248 , GLU H:274 , HOH H:664 , HOH H:729 , HOH H:759
BINDING SITE FOR RESIDUE MG H 502
25
CC7
SOFTWARE
TYR H:46 , GLN H:134 , PHE H:137 , GLU H:173 , HIS H:224 , HIS H:351
BINDING SITE FOR RESIDUE MPD H 503
26
CC8
SOFTWARE
GLN G:184 , ASN G:185 , LEU H:63 , GLU H:67 , ASP H:68 , ASN H:71 , ILE H:75 , PHE H:78
BINDING SITE FOR RESIDUE EPE H 504
[
close Site info
]
SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
View:
Select:
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Sorry, no Info available
[
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PROSITE Patterns/Profiles
(0, 0)
Info
All PROSITE Patterns/Profiles
;
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End label:
Sorry, no Info available
[
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Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
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Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(2, 16)
Info
All SCOP Domains
1a: SCOP_d4e6ma1 (A:0-122)
1b: SCOP_d4e6mb1 (B:0-122)
1c: SCOP_d4e6mc1 (C:0-122)
1d: SCOP_d4e6md1 (D:0-122)
1e: SCOP_d4e6me1 (E:0-122)
1f: SCOP_d4e6mf1 (F:0-122)
1g: SCOP_d4e6mg1 (G:0-122)
1h: SCOP_d4e6mh1 (H:0-122)
2a: SCOP_d4e6ma2 (A:123-400)
2b: SCOP_d4e6mb2 (B:123-400)
2c: SCOP_d4e6mc2 (C:123-400)
2d: SCOP_d4e6md2 (D:123-400)
2e: SCOP_d4e6me2 (E:123-400)
2f: SCOP_d4e6mf2 (F:123-400)
2g: SCOP_d4e6mg2 (G:123-400)
2h: SCOP_d4e6mh2 (H:123-400)
View:
Select:
Label:
Classes
(
)
(
)
Folds
(
)
(
)
Superfamilies
(
)
(
)
Families
(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
Enolase N-terminal domain-like
(211)
Superfamily
:
Enolase N-terminal domain-like
(211)
Family
:
Enolase N-terminal domain-like
(88)
Protein domain
:
Putative dehydratase protein STM2273
(2)
Salmonella enterica [TaxId: 90371]
(1)
1a
d4e6ma1
A:0-122
1b
d4e6mb1
B:0-122
1c
d4e6mc1
C:0-122
1d
d4e6md1
D:0-122
1e
d4e6me1
E:0-122
1f
d4e6mf1
F:0-122
1g
d4e6mg1
G:0-122
1h
d4e6mh1
H:0-122
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
TIM beta/alpha-barrel
(3956)
Superfamily
:
Enolase C-terminal domain-like
(212)
Family
:
D-glucarate dehydratase-like
(65)
Protein domain
:
Putative dehydratase protein STM2273
(2)
Salmonella enterica [TaxId: 90371]
(1)
2a
d4e6ma2
A:123-400
2b
d4e6mb2
B:123-400
2c
d4e6mc2
C:123-400
2d
d4e6md2
D:123-400
2e
d4e6me2
E:123-400
2f
d4e6mf2
F:123-400
2g
d4e6mg2
G:123-400
2h
d4e6mh2
H:123-400
[
close SCOP info
]
CATH Domains
(0, 0)
Info
all CATH domains
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Label:
Sorry, no Info available
[
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Pfam Domains
(0, 0)
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Sorry, no Info available
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