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4E6M
Biol. Unit 3
Info
Asym.Unit (1.1 MB)
Biol.Unit 1, α-C (1.0 MB)
Biol.Unit 1 (1.0 MB)
Biol.Unit 2 (277 KB)
Biol.Unit 3 (276 KB)
Biol.Unit 4 (274 KB)
Biol.Unit 5 (276 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF PUTATIVE DEHYDRATASE PROTEIN FROM SALMONELLA ENTERICA SUBSP. ENTERICA SEROVAR TYPHIMURIUM (SALMONELLA TYPHIMURIUM)
Authors
:
V. N. Malashkevich, R. Bhosle, R. Toro, B. Hillerich, A. Gizzi, S. Garfo A. Kar, M. K. Chan, J. Lafluer, H. Patel, B. Matikainen, S. Chamala, S. L A. Celikgil, G. Villegas, B. Evans, W. Zenchek, J. Love, A. Fiser, K. Kh R. Seidel, J. B. Bonanno, S. C. Almo, New York Structural Genomics Consortium (Nysgrc)
Date
:
15 Mar 12 (Deposition) - 04 Apr 12 (Release) - 09 May 12 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.80
Chains
:
Asym. Unit : A,B,C,D,E,F,G,H
Biol. Unit 1: A,B,C,D,E,F,G,H (1x)
Biol. Unit 2: A,B (1x)
Biol. Unit 3: C,D (1x)
Biol. Unit 4: E,F (1x)
Biol. Unit 5: G,H (1x)
Keywords
:
Structural Genomics, Protein Structure Initiative, New York Structural Genomics Research Consortium, Nysgrc, Psi-Biology, Unknown Function
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
V. N. Malashkevich, R. Bhosle, R. Toro, B. Hillerich, A. Gizzi, S. Garforth, A. Kar, M. K. Chan, J. Lafluer, H. Patel, B. Matikainen, S. Chamala, S. Lim, A. Celikgil, G. Villegas, B. Evans, W. Zenchek, J. Love, A. Fiser, K. Khafizov, R. Seidel, J. B. Bonanno, S. C. Almo
Crystal Structure Of Putative Dehydratase Protein From Salmonella Enterica Subsp. Enterica Serovar Typhimurium (Salmonella Typhimurium)
To Be Published
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Hetero Components
(2, 4)
Info
All Hetero Components
1a: 4-(2-HYDROXYETHYL)-1-PIPERAZINE ET... (EPEa)
1b: 4-(2-HYDROXYETHYL)-1-PIPERAZINE ET... (EPEb)
1c: 4-(2-HYDROXYETHYL)-1-PIPERAZINE ET... (EPEc)
1d: 4-(2-HYDROXYETHYL)-1-PIPERAZINE ET... (EPEd)
1e: 4-(2-HYDROXYETHYL)-1-PIPERAZINE ET... (EPEe)
1f: 4-(2-HYDROXYETHYL)-1-PIPERAZINE ET... (EPEf)
1g: 4-(2-HYDROXYETHYL)-1-PIPERAZINE ET... (EPEg)
1h: 4-(2-HYDROXYETHYL)-1-PIPERAZINE ET... (EPEh)
2a: MAGNESIUM ION (MGa)
2b: MAGNESIUM ION (MGb)
2c: MAGNESIUM ION (MGc)
2d: MAGNESIUM ION (MGd)
2e: MAGNESIUM ION (MGe)
2f: MAGNESIUM ION (MGf)
2g: MAGNESIUM ION (MGg)
2h: MAGNESIUM ION (MGh)
3a: (4S)-2-METHYL-2,4-PENTANEDIOL (MPDa)
3b: (4S)-2-METHYL-2,4-PENTANEDIOL (MPDb)
3c: (4S)-2-METHYL-2,4-PENTANEDIOL (MPDc)
3d: (4S)-2-METHYL-2,4-PENTANEDIOL (MPDd)
3e: (4S)-2-METHYL-2,4-PENTANEDIOL (MPDe)
3f: (4S)-2-METHYL-2,4-PENTANEDIOL (MPDf)
3g: (4S)-2-METHYL-2,4-PENTANEDIOL (MPDg)
3h: (4S)-2-METHYL-2,4-PENTANEDIOL (MPDh)
3i: (4S)-2-METHYL-2,4-PENTANEDIOL (MPDi)
3j: (4S)-2-METHYL-2,4-PENTANEDIOL (MPDj)
View:
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Label:
No.
Name
Count
Type
Full Name
1
EPE
2
Ligand/Ion
4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID
2
MG
-1
Ligand/Ion
MAGNESIUM ION
3
MPD
2
Ligand/Ion
(4S)-2-METHYL-2,4-PENTANEDIOL
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Sites
(7, 7)
Info
All Sites
1: AC8 (SOFTWARE)
2: AC9 (SOFTWARE)
3: BC1 (SOFTWARE)
4: BC2 (SOFTWARE)
5: BC3 (SOFTWARE)
6: BC4 (SOFTWARE)
7: CC5 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
1
AC8
SOFTWARE
GLU C:222 , GLU C:248 , GLU C:274 , HOH C:722 , HOH C:724 , HOH C:745
BINDING SITE FOR RESIDUE MG C 501
2
AC9
SOFTWARE
GLU C:173 , HIS C:224 , HIS C:351 , PHE D:84
BINDING SITE FOR RESIDUE MPD C 502
3
BC1
SOFTWARE
LEU C:63 , GLU C:67 , ASP C:68 , ASN C:71 , ILE C:75 , PHE C:78 , HOH C:664 , GLN D:184 , ASN D:185
BINDING SITE FOR RESIDUE EPE C 503
4
BC2
SOFTWARE
GLU D:222 , GLU D:248 , GLU D:274 , HOH D:696 , HOH D:752 , HOH D:772
BINDING SITE FOR RESIDUE MG D 501
5
BC3
SOFTWARE
PHE C:84 , TYR D:46 , PHE D:137 , GLU D:173 , HIS D:224 , CYS D:326 , HIS D:351
BINDING SITE FOR RESIDUE MPD D 502
6
BC4
SOFTWARE
GLN C:184 , ASN C:185 , ARG C:186 , LEU D:63 , ASP D:68 , ASN D:71 , ILE D:75 , PHE D:78
BINDING SITE FOR RESIDUE EPE D 503
7
CC5
SOFTWARE
LYS C:308 , ASP C:312 , HOH C:631 , TRP H:105 , LEU H:119 , LYS H:308 , ASP H:312 , HOH H:716
BINDING SITE FOR RESIDUE MPD H 501
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are only available for the asymmetric unit)
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PROSITE Patterns/Profiles
(, 0)
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Exons
(0, 0)
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(2, 16)
Info
All SCOP Domains
1a: SCOP_d4e6ma1 (A:0-122)
1b: SCOP_d4e6mb1 (B:0-122)
1c: SCOP_d4e6mc1 (C:0-122)
1d: SCOP_d4e6md1 (D:0-122)
1e: SCOP_d4e6me1 (E:0-122)
1f: SCOP_d4e6mf1 (F:0-122)
1g: SCOP_d4e6mg1 (G:0-122)
1h: SCOP_d4e6mh1 (H:0-122)
2a: SCOP_d4e6ma2 (A:123-400)
2b: SCOP_d4e6mb2 (B:123-400)
2c: SCOP_d4e6mc2 (C:123-400)
2d: SCOP_d4e6md2 (D:123-400)
2e: SCOP_d4e6me2 (E:123-400)
2f: SCOP_d4e6mf2 (F:123-400)
2g: SCOP_d4e6mg2 (G:123-400)
2h: SCOP_d4e6mh2 (H:123-400)
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Protein Domains
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)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
Enolase N-terminal domain-like
(211)
Superfamily
:
Enolase N-terminal domain-like
(211)
Family
:
Enolase N-terminal domain-like
(88)
Protein domain
:
Putative dehydratase protein STM2273
(2)
Salmonella enterica [TaxId: 90371]
(1)
1a
d4e6ma1
A:0-122
1b
d4e6mb1
B:0-122
1c
d4e6mc1
C:0-122
1d
d4e6md1
D:0-122
1e
d4e6me1
E:0-122
1f
d4e6mf1
F:0-122
1g
d4e6mg1
G:0-122
1h
d4e6mh1
H:0-122
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
TIM beta/alpha-barrel
(3956)
Superfamily
:
Enolase C-terminal domain-like
(212)
Family
:
D-glucarate dehydratase-like
(65)
Protein domain
:
Putative dehydratase protein STM2273
(2)
Salmonella enterica [TaxId: 90371]
(1)
2a
d4e6ma2
A:123-400
2b
d4e6mb2
B:123-400
2c
d4e6mc2
C:123-400
2d
d4e6md2
D:123-400
2e
d4e6me2
E:123-400
2f
d4e6mf2
F:123-400
2g
d4e6mg2
G:123-400
2h
d4e6mh2
H:123-400
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CATH Domains
(0, 0)
Info
all CATH domains
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Sorry, no Info available
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Pfam Domains
(0, 0)
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Sorry, no Info available
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Asymmetric Unit 1
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select residue range 5 to 10 in chain 'A'
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Asym.Unit (1.1 MB)
Header - Asym.Unit
Biol.Unit 1 (1.0 MB)
Header - Biol.Unit 1
Biol.Unit 2 (277 KB)
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Biol.Unit 3 (276 KB)
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Biol.Unit 4 (274 KB)
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