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4E6K
Asym. Unit
Info
Asym.Unit (215 KB)
Biol.Unit 1 (810 KB)
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(1)
Title
:
2.0 A RESOLUTION STRUCTURE OF PSEUDOMONAS AERUGINOSA BACTERIOFERRITIN (BFRB) IN COMPLEX WITH BACTERIOFERRITIN ASSOCIATED FERREDOXIN (BFD)
Authors
:
S. Lovell, K. P. Battaile, H. Yao, Y. Wang, R. Kumar, A. Ruvinsky, I. Vask M. Rivera
Date
:
15 Mar 12 (Deposition) - 01 Aug 12 (Release) - 29 Aug 12 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.00
Chains
:
Asym. Unit : A,B,C,D,E,F,G,H,I
Biol. Unit 1: A,B,C,D,E,F,G,H,I (4x)
Keywords
:
Protein Complex, Iron Storage, Iron Binding, Iron Mobilization, Ferritin, Iron Homeostasis, Bacterial Iron Metabolism, Metal Binding Protein-Electron Transport Complex
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
H. Yao, Y. Wang, S. Lovell, R. Kumar, A. M. Ruvinsky, K. P. Battaile, I. A. Vakser, M. Rivera
The Structure Of The Bfrb-Bfd Complex Reveals Protein-Protein Interactions Enabling Iron Release From Bacterioferritin.
J. Am. Chem. Soc. V. 134 13470 2012
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Hetero Components
(5, 16)
Info
All Hetero Components
1a: FE2/S2 (INORGANIC) CLUSTER (FESa)
1b: FE2/S2 (INORGANIC) CLUSTER (FESb)
1c: FE2/S2 (INORGANIC) CLUSTER (FESc)
2a: PROTOPORPHYRIN IX CONTAINING FE (HEMa)
2b: PROTOPORPHYRIN IX CONTAINING FE (HEMb)
2c: PROTOPORPHYRIN IX CONTAINING FE (HEMc)
3a: POTASSIUM ION (Ka)
3b: POTASSIUM ION (Kb)
3c: POTASSIUM ION (Kc)
4a: SODIUM ION (NAa)
4b: SODIUM ION (NAb)
4c: SODIUM ION (NAc)
4d: SODIUM ION (NAd)
4e: SODIUM ION (NAe)
4f: SODIUM ION (NAf)
5a: PHOSPHATE ION (PO4a)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
FES
3
Ligand/Ion
FE2/S2 (INORGANIC) CLUSTER
2
HEM
3
Ligand/Ion
PROTOPORPHYRIN IX CONTAINING FE
3
K
3
Ligand/Ion
POTASSIUM ION
4
NA
6
Ligand/Ion
SODIUM ION
5
PO4
1
Ligand/Ion
PHOSPHATE ION
[
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Sites
(16, 16)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
ASN A:148 , GLN A:151
BINDING SITE FOR RESIDUE K A 201
02
AC2
SOFTWARE
LEU A:19 , ILE A:22 , ASN A:23 , PHE A:26 , TYR A:45 , ILE A:49 , MET A:52 , LYS A:53 , ILE A:59 , LEU A:71 , HOH A:308 , HOH A:363 , HOH A:387 , HOH A:471 , HOH A:472 , LEU B:19 , ILE B:22 , ASN B:23 , PHE B:26 , TYR B:45 , ILE B:49 , MET B:52 , LYS B:53 , ILE B:59
BINDING SITE FOR RESIDUE HEM A 202
03
AC3
SOFTWARE
ASP A:34 , ASP A:132 , THR A:136 , HOH A:464 , HOH A:465
BINDING SITE FOR RESIDUE NA A 203
04
AC4
SOFTWARE
ASN B:148 , GLN B:151 , ASN C:148 , GLN C:151 , ASN D:148 , GLN D:151 , ASN E:148 , GLN E:151
BINDING SITE FOR RESIDUE K B 201
05
AC5
SOFTWARE
ASP B:132 , THR B:136 , HOH B:307 , ASP C:34 , HOH C:441
BINDING SITE FOR RESIDUE NA B 202
06
AC6
SOFTWARE
LEU C:19 , ILE C:22 , ASN C:23 , PHE C:26 , TYR C:45 , ILE C:49 , MET C:52 , LYS C:53 , ALA C:55 , ILE C:59 , HOH C:318 , HOH C:352 , HOH C:359 , HOH C:368 , LEU D:19 , ILE D:22 , ASN D:23 , PHE D:26 , TYR D:45 , ILE D:49 , MET D:52 , LYS D:53 , ALA D:55
BINDING SITE FOR RESIDUE HEM C 201
07
AC7
SOFTWARE
ASP C:132 , THR C:136 , HOH C:304 , ASP E:34 , HOH E:446
BINDING SITE FOR RESIDUE NA C 202
08
AC8
SOFTWARE
ASP B:34 , ASP D:132 , THR D:136 , HOH D:427 , HOH D:428
BINDING SITE FOR RESIDUE NA D 201
09
AC9
SOFTWARE
LEU E:19 , ASN E:23 , PHE E:26 , TYR E:45 , ILE E:49 , MET E:52 , LYS E:53 , LEU E:71 , HOH E:342 , HOH E:366 , HOH E:368 , HOH E:389 , HOH E:395 , LEU F:19 , ILE F:22 , ASN F:23 , PHE F:26 , TYR F:45 , ILE F:49 , MET F:52 , LYS F:53 , LEU F:71
BINDING SITE FOR RESIDUE HEM E 201
10
BC1
SOFTWARE
ASP D:34 , ASP E:132 , THR E:136 , HOH E:302 , HOH E:447
BINDING SITE FOR RESIDUE NA E 202
11
BC2
SOFTWARE
ASN F:148 , GLN F:151
BINDING SITE FOR RESIDUE K F 201
12
BC3
SOFTWARE
ASP F:34 , ASP F:132 , THR F:136 , HOH F:465 , HOH F:467
BINDING SITE FOR RESIDUE NA F 202
13
BC4
SOFTWARE
CYS G:4 , LEU G:5 , CYS G:6 , GLY G:35 , GLN G:37 , CYS G:38 , GLY G:39 , CYS G:41
BINDING SITE FOR RESIDUE FES G 101
14
BC5
SOFTWARE
LYS B:76 , HOH B:321 , ARG G:26 , ARG G:29 , LYS G:46 , HOH G:217 , HOH G:226
BINDING SITE FOR RESIDUE PO4 G 102
15
BC6
SOFTWARE
CYS H:4 , LEU H:5 , CYS H:6 , GLY H:35 , GLN H:37 , CYS H:38 , GLY H:39 , CYS H:41
BINDING SITE FOR RESIDUE FES H 101
16
BC7
SOFTWARE
CYS I:4 , LEU I:5 , CYS I:6 , GLY I:35 , GLN I:37 , CYS I:38 , GLY I:39 , CYS I:41
BINDING SITE FOR RESIDUE FES I 101
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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PROSITE Patterns/Profiles
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Exons
(0, 0)
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All Exons
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All Exon Boundaries
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 6)
Info
All SCOP Domains
1a: SCOP_d4e6ka_ (A:)
1b: SCOP_d4e6kb_ (B:)
1c: SCOP_d4e6kc_ (C:)
1d: SCOP_d4e6kd_ (D:)
1e: SCOP_d4e6ke_ (E:)
1f: SCOP_d4e6kf_ (F:)
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Protein Domains
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Organisms
(
)
(
)
Class
:
All alpha proteins
(14657)
Fold
:
Ferritin-like
(533)
Superfamily
:
Ferritin-like
(489)
Family
:
Ferritin
(232)
Protein domain
:
automated matches
(70)
Pseudomonas aeruginosa [TaxId: 287]
(5)
1a
d4e6ka_
A:
1b
d4e6kb_
B:
1c
d4e6kc_
C:
1d
d4e6kd_
D:
1e
d4e6ke_
E:
1f
d4e6kf_
F:
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CATH Domains
(0, 0)
Info
all CATH domains
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Sorry, no Info available
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Pfam Domains
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Sorry, no Info available
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Protein & NOT Site
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Chain A
Chain B
Chain C
Chain D
Chain E
Chain F
Chain G
Chain H
Chain I
Asymmetric Unit 1
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select chains 'A' and 'C'
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select all 'ALA' residues (Alanines) in chain 'A'
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select residue range 5 to 10 in all chains
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select residue range 5 to 10 in chain 'A'
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Asym.Unit (215 KB)
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