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4E57
Asym. Unit
Info
Asym.Unit (468 KB)
Biol.Unit 1 (234 KB)
Biol.Unit 2 (232 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF SPACER 6AA-SHORTENED CEPHALOSPORIN ACYLASE MUTANT
Authors
:
J. Yin, Z. Zhang, G. Wu, X. Huang
Date
:
14 Mar 12 (Deposition) - 20 Mar 13 (Release) - 20 Mar 13 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.00
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Keywords
:
Cephalosporin Acylase, Spacer, Autocleavage, Hydrolase, Glutaryl-7- Aminocephalosporanic-Acid Acylase, N-Terminal Nucleophile (Ntn) Hydrolase Superfamily
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
J. Yin, Z. Zhang, G. Wu, X. Huang
Spacer Shortened Cephalosporin Acylase
To Be Published
[
close entry info
]
Hetero Components
(1, 33)
Info
All Hetero Components
1a: CADMIUM ION (CDa)
1aa: CADMIUM ION (CDaa)
1ab: CADMIUM ION (CDab)
1ac: CADMIUM ION (CDac)
1ad: CADMIUM ION (CDad)
1ae: CADMIUM ION (CDae)
1af: CADMIUM ION (CDaf)
1ag: CADMIUM ION (CDag)
1b: CADMIUM ION (CDb)
1c: CADMIUM ION (CDc)
1d: CADMIUM ION (CDd)
1e: CADMIUM ION (CDe)
1f: CADMIUM ION (CDf)
1g: CADMIUM ION (CDg)
1h: CADMIUM ION (CDh)
1i: CADMIUM ION (CDi)
1j: CADMIUM ION (CDj)
1k: CADMIUM ION (CDk)
1l: CADMIUM ION (CDl)
1m: CADMIUM ION (CDm)
1n: CADMIUM ION (CDn)
1o: CADMIUM ION (CDo)
1p: CADMIUM ION (CDp)
1q: CADMIUM ION (CDq)
1r: CADMIUM ION (CDr)
1s: CADMIUM ION (CDs)
1t: CADMIUM ION (CDt)
1u: CADMIUM ION (CDu)
1v: CADMIUM ION (CDv)
1w: CADMIUM ION (CDw)
1x: CADMIUM ION (CDx)
1y: CADMIUM ION (CDy)
1z: CADMIUM ION (CDz)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
CD
33
Ligand/Ion
CADMIUM ION
[
close Hetero Component info
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Sites
(33, 33)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
19: CC1 (SOFTWARE)
20: CC2 (SOFTWARE)
21: CC3 (SOFTWARE)
22: CC4 (SOFTWARE)
23: CC5 (SOFTWARE)
24: CC6 (SOFTWARE)
25: CC7 (SOFTWARE)
26: CC8 (SOFTWARE)
27: CC9 (SOFTWARE)
28: DC1 (SOFTWARE)
29: DC2 (SOFTWARE)
30: DC3 (SOFTWARE)
31: DC4 (SOFTWARE)
32: DC5 (SOFTWARE)
33: DC6 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
ASP A:662
BINDING SITE FOR RESIDUE CD A 701
02
AC2
SOFTWARE
ASP A:325
BINDING SITE FOR RESIDUE CD A 702
03
AC3
SOFTWARE
GLU A:161 , THR A:192
BINDING SITE FOR RESIDUE CD A 703
04
AC4
SOFTWARE
ASP A:506
BINDING SITE FOR RESIDUE CD A 704
05
AC5
SOFTWARE
ASP A:74
BINDING SITE FOR RESIDUE CD A 705
06
AC6
SOFTWARE
ASP A:123 , HOH A:977 , HOH A:1263
BINDING SITE FOR RESIDUE CD A 706
07
AC7
SOFTWARE
HIS A:650 , GLU A:679
BINDING SITE FOR RESIDUE CD A 707
08
AC8
SOFTWARE
HIS A:465 , HOH A:1471 , HOH A:1472
BINDING SITE FOR RESIDUE CD A 708
09
AC9
SOFTWARE
ASP A:555
BINDING SITE FOR RESIDUE CD A 709
10
BC1
SOFTWARE
ASP A:577
BINDING SITE FOR RESIDUE CD A 710
11
BC2
SOFTWARE
ASP A:328
BINDING SITE FOR RESIDUE CD A 711
12
BC3
SOFTWARE
ARG A:264 , GLU A:284
BINDING SITE FOR RESIDUE CD A 712
13
BC4
SOFTWARE
ASP A:425
BINDING SITE FOR RESIDUE CD A 713
14
BC5
SOFTWARE
GLU A:674
BINDING SITE FOR RESIDUE CD A 714
15
BC6
SOFTWARE
GLU A:316 , ASP A:320 , CD A:716
BINDING SITE FOR RESIDUE CD A 715
16
BC7
SOFTWARE
SER A:99 , ASP A:101 , GLU A:316 , CD A:715
BINDING SITE FOR RESIDUE CD A 716
17
BC8
SOFTWARE
ASP A:329
BINDING SITE FOR RESIDUE CD A 717
18
BC9
SOFTWARE
GLU A:610
BINDING SITE FOR RESIDUE CD A 718
19
CC1
SOFTWARE
ASP A:451 , ASP A:452
BINDING SITE FOR RESIDUE CD A 719
20
CC2
SOFTWARE
ASP B:123
BINDING SITE FOR RESIDUE CD B 701
21
CC3
SOFTWARE
ASP B:329
BINDING SITE FOR RESIDUE CD B 702
22
CC4
SOFTWARE
ASP B:74
BINDING SITE FOR RESIDUE CD B 703
23
CC5
SOFTWARE
HIS B:650 , GLU B:679
BINDING SITE FOR RESIDUE CD B 704
24
CC6
SOFTWARE
HIS B:465 , HOH B:1430 , HOH B:1432
BINDING SITE FOR RESIDUE CD B 705
25
CC7
SOFTWARE
ASP B:555
BINDING SITE FOR RESIDUE CD B 706
26
CC8
SOFTWARE
ASP B:577 , HOH B:1286
BINDING SITE FOR RESIDUE CD B 707
27
CC9
SOFTWARE
ASP B:328
BINDING SITE FOR RESIDUE CD B 708
28
DC1
SOFTWARE
ASP B:662
BINDING SITE FOR RESIDUE CD B 709
29
DC2
SOFTWARE
GLU B:674
BINDING SITE FOR RESIDUE CD B 710
30
DC3
SOFTWARE
ASP B:425
BINDING SITE FOR RESIDUE CD B 711
31
DC4
SOFTWARE
GLU B:316 , ASP B:320 , CD B:713
BINDING SITE FOR RESIDUE CD B 712
32
DC5
SOFTWARE
SER B:99 , ASP B:101 , GLU B:316 , CD B:712
BINDING SITE FOR RESIDUE CD B 713
33
DC6
SOFTWARE
GLU B:610
BINDING SITE FOR RESIDUE CD B 714
[
close Site info
]
SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
View:
Select:
Label:
Sorry, no Info available
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PROSITE Patterns/Profiles
(0, 0)
Info
All PROSITE Patterns/Profiles
;
View:
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Label:
End label:
Sorry, no Info available
[
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Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 2)
Info
All SCOP Domains
1a: SCOP_d4e57a_ (A:)
1b: SCOP_d4e57b_ (B:)
View:
Select:
Label:
Classes
(
)
(
)
Folds
(
)
(
)
Superfamilies
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)
(
)
Families
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)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
Ntn hydrolase-like
(356)
Superfamily
:
N-terminal nucleophile aminohydrolases (Ntn hydrolases)
(352)
Family
:
Penicillin acylase, catalytic domain
(37)
Protein domain
:
automated matches
(3)
Pseudomonas sp. [TaxId: 81841]
(3)
1a
d4e57a_
A:
1b
d4e57b_
B:
[
close SCOP info
]
CATH Domains
(0, 0)
Info
all CATH domains
View:
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Label:
Sorry, no Info available
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Pfam Domains
(0, 0)
Info
all PFAM domains
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Label:
Sorry, no Info available
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Atom Selection
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Protein
Nucleic
Backbone
Sidechain
Hetero
Ligand
Solvent
All Atoms
Protein & NOT Variant
Protein & NOT Site
Protein & NOT PROSITE
Chain A
Chain B
Asymmetric Unit 1
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Miscellaneous
Script
Example Commands
Example Command
Action
select :A, :C
select chains 'A' and 'C'
select [ALA]:A
select all 'ALA' residues (Alanines) in chain 'A'
select 5-10
select residue range 5 to 10 in all chains
select 5-10:A
select residue range 5 to 10 in chain 'A'
select protein & not helix & not sheet
select non-helix/non-sheet protein parts
set fontsize 20
set label size to 20 (allowed range: 1-58)
ssbonds 100
show SS bonds with a radius of 100 units (=0.4Å)
wireframe 100
show bonds with a radius of 100 units (=0.4Å)
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View and selection are coupled in the structure specific controls (e.g. "Hetero","PROSITE") .
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Show PDB file:
Asym.Unit (468 KB)
Header - Asym.Unit
Biol.Unit 1 (234 KB)
Header - Biol.Unit 1
Biol.Unit 2 (232 KB)
Header - Biol.Unit 2
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