PLEASE WAIT...
Getting 'Biological Unit' information from database.
PLEASE WAIT...
Getting 'Hetero Component' information from database.
PLEASE WAIT...
Getting 'Site' information from database.
PLEASE WAIT...
Getting 'PROSITE' information from database.
PLEASE WAIT...
Getting 'Exon' information from database.
4E4M
Asym. Unit
Info
Asym.Unit (420 KB)
Biol.Unit 1 (106 KB)
Biol.Unit 2 (106 KB)
Biol.Unit 3 (107 KB)
Biol.Unit 4 (106 KB)
(using Jmol or JSmol)
spin
show selected part
auto zoom/center
Standard Views
(
Basic
|
Advanced
Interface
)
(
Basic
|
Advanced
Interface
)
Help
(1)
Title
:
JAK2 KINASE (JH1 DOMAIN) IN COMPLEX WITH COMPOUND 30
Authors
:
C. Eigenbrot
Date
:
13 Mar 12 (Deposition) - 30 May 12 (Release) - 11 Jul 12 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.25
Chains
:
Asym. Unit : A,B,D,E
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Biol. Unit 3: D (1x)
Biol. Unit 4: E (1x)
Keywords
:
O-Phosphotyrosine, Transferase-Transferase Inhibitor Complex
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
J. J. Kulagowski, W. Blair, R. J. Bull, C. Chang, G. Deshmukh, H. J. Dyke C. Eigenbrot, N. Ghilardi, P. Gibbons, T. K. Harrison, P. R. Hewitt, M. Liimatta, C. A. Hurley, A. Johnson, T. Johnson, J. R. Kenny, P. Bir Kohli, R. J. Maxey, R. Mendonca, K. Mortara, J. Murray, R. Narukulla, S. Shia, M. Steffek, S. Ubhayakar, M. Ultsch, A. Van Abbema, S. I. Ward, B. Waszkowycz, M. Zak
Identification Of Imidazo-Pyrrolopyridines As Novel And Potent Jak1 Inhibitors.
J. Med. Chem. V. 55 5901 2012
[
close entry info
]
Hetero Components
(2, 12)
Info
All Hetero Components
1a: 1-[4-METHYL-1-(METHYLSULFONYL)PIPE... (0NHa)
1b: 1-[4-METHYL-1-(METHYLSULFONYL)PIPE... (0NHb)
1c: 1-[4-METHYL-1-(METHYLSULFONYL)PIPE... (0NHc)
1d: 1-[4-METHYL-1-(METHYLSULFONYL)PIPE... (0NHd)
2a: O-PHOSPHOTYROSINE (PTRa)
2b: O-PHOSPHOTYROSINE (PTRb)
2c: O-PHOSPHOTYROSINE (PTRc)
2d: O-PHOSPHOTYROSINE (PTRd)
2e: O-PHOSPHOTYROSINE (PTRe)
2f: O-PHOSPHOTYROSINE (PTRf)
2g: O-PHOSPHOTYROSINE (PTRg)
2h: O-PHOSPHOTYROSINE (PTRh)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
0NH
4
Ligand/Ion
1-[4-METHYL-1-(METHYLSULFONYL)PIPERIDIN-4-YL]-1,6-DIHYDROIMIDAZO[4,5-D]PYRROLO[2,3-B]PYRIDINE
2
PTR
8
Mod. Amino Acid
O-PHOSPHOTYROSINE
[
close Hetero Component info
]
Sites
(4, 4)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
LEU A:855 , GLY A:856 , LYS A:857 , GLY A:858 , VAL A:863 , ALA A:880 , GLU A:930 , TYR A:931 , LEU A:932 , GLY A:935 , ARG A:980 , ASN A:981 , LEU A:983 , ASP A:994 , HOH A:1344 , HOH B:1380
BINDING SITE FOR RESIDUE 0NH A 1201
2
AC2
SOFTWARE
LEU B:855 , LYS B:857 , GLY B:858 , ALA B:880 , GLU B:930 , TYR B:931 , LEU B:932 , GLY B:935 , ARG B:980 , LEU B:983 , ASP B:994 , HOH B:1415
BINDING SITE FOR RESIDUE 0NH B 1201
3
AC3
SOFTWARE
LEU D:855 , LYS D:857 , GLY D:858 , ALA D:880 , GLU D:930 , TYR D:931 , LEU D:932 , GLY D:935 , ARG D:980 , ASN D:981 , LEU D:983 , ASP D:994
BINDING SITE FOR RESIDUE 0NH D 1201
4
AC4
SOFTWARE
GLY E:856 , LYS E:857 , GLY E:858 , VAL E:863 , ALA E:880 , GLU E:930 , TYR E:931 , LEU E:932 , GLY E:935 , ARG E:980 , ASN E:981 , LEU E:983 , ASP E:994 , HOH E:1329 , HOH E:1386
BINDING SITE FOR RESIDUE 0NH E 1201
[
close Site info
]
SAPs(SNPs)/Variants
(1, 4)
Info
(mutated residues are not available)
All SNPs/Variants
1: VAR_041721 (R1063H, chain A/B/D/E, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_041721
R
1063
H
JAK2_HUMAN
Polymorphism
41316003
A/B/D/E
R
1063
H
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
[
close SNP/Variant info
]
PROSITE Patterns/Profiles
(2, 8)
Info
All PROSITE Patterns/Profiles
1: PROTEIN_KINASE_ATP (A:855-883,B:855-883,D:855-883,E:85...)
2: PROTEIN_KINASE_TYR (A:972-984,B:972-984,D:972-984,E:97...)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
PROTEIN_KINASE_ATP
PS00107
Protein kinases ATP-binding region signature.
JAK2_HUMAN
855-883
4
A:855-883
B:855-883
D:855-883
E:855-883
2
PROTEIN_KINASE_TYR
PS00109
Tyrosine protein kinases specific active-site signature.
JAK2_HUMAN
972-984
4
A:972-984
B:972-984
D:972-984
E:972-984
[
close PROSITE info
]
Exons
(7, 28)
Info
All Exons
Exon 1.20 (A:835-857 | B:835-857 | D:835-857 ...)
Exon 1.21 (A:858-921 | B:858-921 | D:858-921 ...)
Exon 1.22 (A:921-962 | B:921-962 | D:921-962 ...)
Exon 1.23 (A:963-1020 | B:963-1020 | D:963-10...)
Exon 1.24 (A:1020-1059 | B:1020-1059 | D:1020...)
Exon 1.25b (A:1060-1097 | B:1060-1097 | D:1060...)
Exon 1.26b (A:1098-1132 | B:1098-1132 | D:1098...)
View:
Select:
Label:
All Exon Boundaries
1: Boundary 1.19/1.20
2: Boundary 1.20/1.21
3: Boundary 1.21/1.22
4: Boundary 1.22/1.23
5: Boundary 1.23/1.24
6: Boundary 1.24/1.25b
7: Boundary 1.25b/1.26b
8: Boundary 1.26b/-
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.2
ENST00000381652
2
ENSE00001489462
chr9:
4985245-4985630
386
JAK2_HUMAN
-
0
0
-
-
1.3
ENST00000381652
3
ENSE00001489459
chr9:
4985940-4986022
83
JAK2_HUMAN
-
0
0
-
-
1.4b
ENST00000381652
4b
ENSE00001489453
chr9:
5021963-5022213
251
JAK2_HUMAN
1-76
76
0
-
-
1.5
ENST00000381652
5
ENSE00000687814
chr9:
5029783-5029906
124
JAK2_HUMAN
76-117
42
0
-
-
1.6a
ENST00000381652
6a
ENSE00000506574
chr9:
5044403-5044520
118
JAK2_HUMAN
117-156
40
0
-
-
1.7
ENST00000381652
7
ENSE00001282936
chr9:
5050686-5050831
146
JAK2_HUMAN
157-205
49
0
-
-
1.8b
ENST00000381652
8b
ENSE00000687923
chr9:
5054563-5054884
322
JAK2_HUMAN
205-312
108
0
-
-
1.9
ENST00000381652
9
ENSE00000687929
chr9:
5055669-5055788
120
JAK2_HUMAN
313-352
40
0
-
-
1.10
ENST00000381652
10
ENSE00001282918
chr9:
5064883-5065040
158
JAK2_HUMAN
353-405
53
0
-
-
1.11
ENST00000381652
11
ENSE00001282909
chr9:
5066678-5066789
112
JAK2_HUMAN
405-442
38
0
-
-
1.12
ENST00000381652
12
ENSE00000687945
chr9:
5069022-5069208
187
JAK2_HUMAN
443-505
63
0
-
-
1.13
ENST00000381652
13
ENSE00001282899
chr9:
5069925-5070052
128
JAK2_HUMAN
505-547
43
0
-
-
1.14
ENST00000381652
14
ENSE00000687951
chr9:
5072492-5072626
135
JAK2_HUMAN
548-592
45
0
-
-
1.15
ENST00000381652
15
ENSE00001282890
chr9:
5073698-5073785
88
JAK2_HUMAN
593-622
30
0
-
-
1.16
ENST00000381652
16
ENSE00001282885
chr9:
5077453-5077580
128
JAK2_HUMAN
622-664
43
0
-
-
1.17
ENST00000381652
17
ENSE00000687968
chr9:
5078306-5078444
139
JAK2_HUMAN
665-711
47
0
-
-
1.18
ENST00000381652
18
ENSE00000687973
chr9:
5080229-5080380
152
JAK2_HUMAN
711-761
51
0
-
-
1.19
ENST00000381652
19
ENSE00001282875
chr9:
5080533-5080683
151
JAK2_HUMAN
762-812
51
0
-
-
1.20
ENST00000381652
20
ENSE00001282867
chr9:
5081725-5081861
137
JAK2_HUMAN
812-857
46
4
A:835-857
B:835-857
D:835-857
E:835-857
23
23
23
23
1.21
ENST00000381652
21
ENSE00000688013
chr9:
5089674-5089863
190
JAK2_HUMAN
858-921
64
4
A:858-921
B:858-921
D:858-921
E:858-921
64
64
64
64
1.22
ENST00000381652
22
ENSE00000688019
chr9:
5090446-5090570
125
JAK2_HUMAN
921-962
42
4
A:921-962
B:921-962
D:921-962
E:921-962
42
42
42
42
1.23
ENST00000381652
23
ENSE00001282842
chr9:
5090739-5090911
173
JAK2_HUMAN
963-1020
58
4
A:963-1020
B:963-1020
D:963-1020
E:963-1020
58
58
58
58
1.24
ENST00000381652
24
ENSE00001282833
chr9:
5123004-5123121
118
JAK2_HUMAN
1020-1059
40
4
A:1020-1059
B:1020-1059
D:1020-1059
E:1020-1059
40
40
40
40
1.25b
ENST00000381652
25b
ENSE00001282826
chr9:
5126333-5126446
114
JAK2_HUMAN
1060-1097
38
4
A:1060-1097
B:1060-1097
D:1060-1097
E:1060-1097
38
38
38
38
1.26b
ENST00000381652
26b
ENSE00001489355
chr9:
5126684-5128183
1500
JAK2_HUMAN
1098-1132
35
4
A:1098-1132
B:1098-1132
D:1098-1132
E:1098-1132
35
35
35
35
[
close EXON info
]
SCOP Domains
(1, 4)
Info
All SCOP Domains
1a: SCOP_d4e4ma_ (A:)
1b: SCOP_d4e4mb_ (B:)
1c: SCOP_d4e4md_ (D:)
1d: SCOP_d4e4me_ (E:)
View:
Select:
Label:
Classes
(
)
(
)
Folds
(
)
(
)
Superfamilies
(
)
(
)
Families
(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
Protein kinase-like (PK-like)
(2589)
Superfamily
:
Protein kinase-like (PK-like)
(2589)
Family
:
automated matches
(529)
Protein domain
:
automated matches
(529)
Human (Homo sapiens) [TaxId: 9606]
(438)
1a
d4e4ma_
A:
1b
d4e4mb_
B:
1c
d4e4md_
D:
1d
d4e4me_
E:
[
close SCOP info
]
CATH Domains
(0, 0)
Info
all CATH domains
View:
Select:
Label:
Sorry, no Info available
[
close CATH info
]
Pfam Domains
(0, 0)
Info
all PFAM domains
View:
Select:
Label:
Sorry, no Info available
[
close Pfam info
]
Atom Selection
(currently selected atoms:
all
)
Protein
Nucleic
Backbone
Sidechain
Hetero
Ligand
Solvent
All Atoms
Protein & NOT Variant
Protein & NOT Site
Protein & NOT PROSITE
Chain A
Chain B
Chain D
Chain E
Asymmetric Unit 1
Rendering
(selected part)
Molecule Coloring
(selected part)
by Chain (Asym. Unit)
by Chain (Biol. Unit)
by Secondary Structure
by Atom (CPK)
by SCOP Domain
by CATH Domain
by Pfam Domain
by Asymmetric Unit
by Exon
by Amino Acid
by Nucleotide
by Temperature
by Charge
by Rainbow (Group)
by Custom Color
Background Coloring
Choose
molecule
background
color...
[
close
]
RGB value
(e.g.: "#3cb371" or "60,179,113")
Stereo
Graphics Window
x
pixel
Miscellaneous
Script
Example Commands
Example Command
Action
select :A, :C
select chains 'A' and 'C'
select [ALA]:A
select all 'ALA' residues (Alanines) in chain 'A'
select 5-10
select residue range 5 to 10 in all chains
select 5-10:A
select residue range 5 to 10 in chain 'A'
select protein & not helix & not sheet
select non-helix/non-sheet protein parts
set fontsize 20
set label size to 20 (allowed range: 1-58)
ssbonds 100
show SS bonds with a radius of 100 units (=0.4Å)
wireframe 100
show bonds with a radius of 100 units (=0.4Å)
[
close Script example commands
]
Log
Note:
In this "Basic Interface" any change in the selection of a pulldown menu automatically triggers an action (one-step mechanism).
View and selection are coupled in the structure specific controls (e.g. "Hetero","PROSITE") .
Note:
In this "Advanced Interface" any change in the selection of a pulldown menu only sets the target for the corresponding control buttons (two-step mechanism).
View and selection are set independently in the structure specific controls (e.g. "Hetero","PROSITE") .
QuickSearch:
by PDB,NDB,UniProt,PROSITE Code or
Search Term(s)
Show PDB file:
Asym.Unit (420 KB)
Header - Asym.Unit
Biol.Unit 1 (106 KB)
Header - Biol.Unit 1
Biol.Unit 2 (106 KB)
Header - Biol.Unit 2
Biol.Unit 3 (107 KB)
Header - Biol.Unit 3
Biol.Unit 4 (106 KB)
Header - Biol.Unit 4
Plain Text
HTML (compressed size)
use JSmol [Javascript]
use Jmol [Java applet]
Upload:
Select a local file
OR
Enter a remote file address
You can upload any molecular structure file format that is recognized by Jmol,
e.g.: PDB, mmCif, CIF, CML, MOL, XYZ
(also compressed with 'gzip', see the
Jmol documentation
for a complete list)
JenaLib Atlas Page
|
Sequence/Alignment View
4E4M
Jmol Script Commands
|
Jmol Color Schemes
|
Jmol Mouse Manual
|
Jmol Wiki
controls:
collapse
expand
Home
JenaLib
Jmol Scripting
Contact
Help
