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4E35
Asym. Unit
Info
Asym.Unit (66 KB)
Biol.Unit 1 (32 KB)
Biol.Unit 2 (32 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF CFTR ASSOCIATED LIGAND (CAL) PDZ DOMAIN BOUND TO ICAL36-L (ANSRWPTSIL) PEPTIDE
Authors
:
J. F. Amacher, D. R. Madden
Date
:
09 Mar 12 (Deposition) - 26 Dec 12 (Release) - 06 Mar 13 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.40
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A,C (1x)
Biol. Unit 2: B,D (1x)
Keywords
:
Pdz-Peptide Complex, Protein Transport-Protein Binding Complex
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
J. F. Amacher, P. R. Cushing, C. D. Bahl, T. Beck, D. R. Madden
Stereochemical Determinants Of C-Terminal Specificity In Pd Peptide-Binding Domains: A Novel Contribution Of The Carboxylate-Binding Loop.
J. Biol. Chem. V. 288 5114 2013
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Hetero Components
(1, 5)
Info
All Hetero Components
1a: GLYCEROL (GOLa)
1b: GLYCEROL (GOLb)
1c: GLYCEROL (GOLc)
1d: GLYCEROL (GOLd)
1e: GLYCEROL (GOLe)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
GOL
5
Ligand/Ion
GLYCEROL
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Sites
(7, 7)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
5: AC5 (SOFTWARE)
6: AC6 (SOFTWARE)
7: AC7 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
GLN A:322 , HOH A:528 , HOH A:562 , GLY B:284 , PRO B:285 , ILE B:286 , VAL B:368 , HOH B:570 , ILE C:9
BINDING SITE FOR RESIDUE GOL A 401
2
AC2
SOFTWARE
LEU A:292 , LYS A:293 , GLU A:294 , LYS A:350 , HOH A:521 , HOH A:525
BINDING SITE FOR RESIDUE GOL A 402
3
AC3
SOFTWARE
ASP A:346 , LYS A:348 , GLU A:351 , HOH A:580 , LYS B:288 , LEU B:290 , GLU B:364 , GOL B:402 , HOH B:547 , HOH B:566
BINDING SITE FOR RESIDUE GOL B 401
4
AC4
SOFTWARE
HIS A:296 , VAL A:342 , ASN A:343 , LYS B:288 , GOL B:401 , HOH B:566
BINDING SITE FOR RESIDUE GOL B 402
5
AC5
SOFTWARE
SER A:357 , LYS B:288 , GLU B:364 , GLU B:366 , HOH B:511 , HOH B:546
BINDING SITE FOR RESIDUE GOL B 403
6
AC6
SOFTWARE
GLY A:298 , LEU A:299 , GLY A:300 , ILE A:301 , SER A:302 , ILE A:303 , THR A:304 , HIS A:309 , HIS A:349 , VAL A:353 , LEU A:356 , GOL A:401 , HOH A:528 , HOH A:573 , ILE B:286 , ARG B:345 , HOH C:102 , HOH C:103 , HOH C:104 , HOH C:106 , HOH C:112
BINDING SITE FOR CHAIN C OF ICAL50 PEPTIDE
7
AC7
SOFTWARE
GLY A:284 , PRO A:285 , ILE A:286 , ASP A:325 , VAL A:370 , LEU B:292 , GLY B:298 , LEU B:299 , GLY B:300 , ILE B:301 , SER B:302 , ILE B:303 , THR B:304 , HIS B:309 , VAL B:311 , HIS B:349 , VAL B:353 , LEU B:356 , ARG B:360 , GLY B:361 , GLU B:362 , HOH B:513 , HOH B:515 , HOH B:537 , HOH D:101 , HOH D:102 , HOH D:104 , HOH D:108 , HOH D:109 , HOH D:110 , HOH D:111 , HOH D:114
BINDING SITE FOR CHAIN D OF ICAL50 PEPTIDE
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
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Sorry, no Info available
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PROSITE Patterns/Profiles
(1, 2)
Info
All PROSITE Patterns/Profiles
1: PDZ (A:288-370,B:288-370)
;
View:
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Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
PDZ
PS50106
PDZ domain profile.
GOPC_HUMAN
288-371
2
A:288-370
B:288-370
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Exons
(3, 6)
Info
All Exons
Exon 1.6 (A:284-304 | B:284-304)
Exon 1.7 (A:305-359 | B:305-359)
Exon 1.8 (A:360-370 | B:360-370)
View:
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All Exon Boundaries
1: Boundary 1.5a/1.6
2: Boundary 1.6/1.7
3: Boundary 1.7/1.8
4: Boundary 1.8/1.9
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1b
ENST00000368498
1b
ENSE00001931189
chr6:
117923527-117923167
361
GOPC_HUMAN
1-95
95
0
-
-
1.2
ENST00000368498
2
ENSE00000840039
chr6:
117900227-117900063
165
GOPC_HUMAN
96-150
55
0
-
-
1.3
ENST00000368498
3
ENSE00001371009
chr6:
117898634-117898611
24
GOPC_HUMAN
151-158
8
0
-
-
1.4
ENST00000368498
4
ENSE00000762781
chr6:
117896515-117896340
176
GOPC_HUMAN
159-217
59
0
-
-
1.5a
ENST00000368498
5a
ENSE00000762780
chr6:
117894795-117894630
166
GOPC_HUMAN
217-272
56
0
-
-
1.6
ENST00000368498
6
ENSE00002164938
chr6:
117892118-117892023
96
GOPC_HUMAN
273-304
32
2
A:284-304
B:284-304
21
21
1.7
ENST00000368498
7
ENSE00002151421
chr6:
117890899-117890735
165
GOPC_HUMAN
305-359
55
2
A:305-359
B:305-359
55
55
1.8
ENST00000368498
8
ENSE00002152146
chr6:
117888197-117888017
181
GOPC_HUMAN
360-420
61
2
A:360-370
B:360-370
11
11
1.9
ENST00000368498
9
ENSE00001017893
chr6:
117884547-117881432
3116
GOPC_HUMAN
420-462
43
0
-
-
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SCOP Domains
(1, 2)
Info
All SCOP Domains
1a: SCOP_d4e35a_ (A:)
1b: SCOP_d4e35b_ (B:)
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Class
:
All beta proteins
(24004)
Fold
:
PDZ domain-like
(299)
Superfamily
:
PDZ domain-like
(299)
Family
:
automated matches
(94)
Protein domain
:
automated matches
(94)
Human (Homo sapiens) [TaxId: 9606]
(71)
1a
d4e35a_
A:
1b
d4e35b_
B:
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CATH Domains
(0, 0)
Info
all CATH domains
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Pfam Domains
(0, 0)
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Protein & NOT Site
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Chain D
Asymmetric Unit 1
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Asym.Unit (66 KB)
Header - Asym.Unit
Biol.Unit 1 (32 KB)
Header - Biol.Unit 1
Biol.Unit 2 (32 KB)
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