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4E2F
Asym. Unit
Info
Asym.Unit (929 KB)
Biol.Unit 1 (913 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF E. COLI ASPARTATE TRANSCARBAMOYLASE K164E/E239K MUTANT IN AN INTERMEDIATE STATE
Authors
:
W. Guo, E. R. Kantrowitz
Date
:
08 Mar 12 (Deposition) - 02 May 12 (Release) - 30 May 12 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.80
Chains
:
Asym. Unit : A,B,C,D,E,F,G,H,I,J,K,L
Biol. Unit 1: A,B,C,D,E,F,G,H,I,J,K,L (1x)
Keywords
:
Transferase, Cooperativity, Allosteric Transition, Intermediate, Transferase-Protein Binding Complex
(Keyword Search:
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Reference
:
W. Guo, J. M. West, A. S. Dutton, H. Tsuruta, E. R. Kantrowitz
Trapping And Structure Determination Of An Intermediate In The Allosteric Transition Of Aspartate Transcarbamoylase.
Proc. Natl. Acad. Sci. Usa V. 109 7741 2012
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Hetero Components
(1, 6)
Info
All Hetero Components
1a: ZINC ION (ZNa)
1b: ZINC ION (ZNb)
1c: ZINC ION (ZNc)
1d: ZINC ION (ZNd)
1e: ZINC ION (ZNe)
1f: ZINC ION (ZNf)
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No.
Name
Count
Type
Full Name
1
ZN
6
Ligand/Ion
ZINC ION
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Sites
(6, 6)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
5: AC5 (SOFTWARE)
6: AC6 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
CYS D:109 , CYS D:114 , CYS D:138 , CYS D:141
BINDING SITE FOR RESIDUE ZN D 201
2
AC2
SOFTWARE
CYS B:109 , CYS B:114 , CYS B:138 , CYS B:141
BINDING SITE FOR RESIDUE ZN B 201
3
AC3
SOFTWARE
CYS J:109 , CYS J:114 , CYS J:138 , CYS J:141
BINDING SITE FOR RESIDUE ZN J 201
4
AC4
SOFTWARE
CYS L:109 , CYS L:114 , CYS L:138 , CYS L:141
BINDING SITE FOR RESIDUE ZN L 201
5
AC5
SOFTWARE
CYS H:109 , CYS H:114 , CYS H:138 , CYS H:141
BINDING SITE FOR RESIDUE ZN H 201
6
AC6
SOFTWARE
CYS F:109 , CYS F:114 , CYS F:138 , CYS F:141
BINDING SITE FOR RESIDUE ZN F 201
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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PROSITE Patterns/Profiles
(1, 6)
Info
All PROSITE Patterns/Profiles
1: CARBAMOYLTRANSFERASE (A:48-55,C:48-55,E:48-55,G:48-55,I:...)
;
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PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
CARBAMOYLTRANSFERASE
PS00097
Aspartate and ornithine carbamoyltransferases signature.
PYRB_ECOLI
49-56
6
A:48-55
C:48-55
E:48-55
G:48-55
I:48-55
K:48-55
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Exons
(0, 0)
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(3, 24)
Info
All SCOP Domains
1a: SCOP_d4e2fb1 (B:10-100)
1b: SCOP_d4e2fd1 (D:10-100)
1c: SCOP_d4e2ff1 (F:10-100)
1d: SCOP_d4e2fh1 (H:10-100)
1e: SCOP_d4e2fj1 (J:10-100)
1f: SCOP_d4e2fl1 (L:10-100)
2a: SCOP_d4e2fa1 (A:1-150)
2b: SCOP_d4e2fa2 (A:151-310)
2c: SCOP_d4e2fc1 (C:1-150)
2d: SCOP_d4e2fc2 (C:151-310)
2e: SCOP_d4e2fe1 (E:1-150)
2f: SCOP_d4e2fe2 (E:151-310)
2g: SCOP_d4e2fg1 (G:1-150)
2h: SCOP_d4e2fg2 (G:151-310)
2i: SCOP_d4e2fi1 (I:1-150)
2j: SCOP_d4e2fi2 (I:151-310)
2k: SCOP_d4e2fk1 (K:1-150)
2l: SCOP_d4e2fk2 (K:151-310)
3a: SCOP_d4e2fb2 (B:101-153)
3b: SCOP_d4e2fd2 (D:101-153)
3c: SCOP_d4e2ff2 (F:101-153)
3d: SCOP_d4e2fh2 (H:101-153)
3e: SCOP_d4e2fj2 (J:101-153)
3f: SCOP_d4e2fl2 (L:101-153)
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Classes
(
)
(
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(
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(
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Families
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)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
Ferredoxin-like
(1795)
Superfamily
:
Aspartate carbamoyltransferase, Regulatory-chain, N-terminal domain
(63)
Family
:
Aspartate carbamoyltransferase, Regulatory-chain, N-terminal domain
(62)
Protein domain
:
Aspartate carbamoyltransferase
(62)
Escherichia coli [TaxId: 562]
(59)
1a
d4e2fb1
B:10-100
1b
d4e2fd1
D:10-100
1c
d4e2ff1
F:10-100
1d
d4e2fh1
H:10-100
1e
d4e2fj1
J:10-100
1f
d4e2fl1
L:10-100
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
ATC-like
(129)
Superfamily
:
Aspartate/ornithine carbamoyltransferase
(122)
Family
:
Aspartate/ornithine carbamoyltransferase
(87)
Protein domain
:
Aspartate carbamoyltransferase catalytic subunit
(68)
Escherichia coli [TaxId: 562]
(62)
2a
d4e2fa1
A:1-150
2b
d4e2fa2
A:151-310
2c
d4e2fc1
C:1-150
2d
d4e2fc2
C:151-310
2e
d4e2fe1
E:1-150
2f
d4e2fe2
E:151-310
2g
d4e2fg1
G:1-150
2h
d4e2fg2
G:151-310
2i
d4e2fi1
I:1-150
2j
d4e2fi2
I:151-310
2k
d4e2fk1
K:1-150
2l
d4e2fk2
K:151-310
Class
:
Small proteins
(3458)
Fold
:
Rubredoxin-like
(572)
Superfamily
:
Aspartate carbamoyltransferase, Regulatory-chain, C-terminal domain
(63)
Family
:
Aspartate carbamoyltransferase, Regulatory-chain, C-terminal domain
(62)
Protein domain
:
Aspartate carbamoyltransferase, Regulatory-chain, C-terminal domain
(62)
Escherichia coli [TaxId: 562]
(59)
3a
d4e2fb2
B:101-153
3b
d4e2fd2
D:101-153
3c
d4e2ff2
F:101-153
3d
d4e2fh2
H:101-153
3e
d4e2fj2
J:101-153
3f
d4e2fl2
L:101-153
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CATH Domains
(0, 0)
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Pfam Domains
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select residue range 5 to 10 in chain 'A'
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Asym.Unit (929 KB)
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