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4E1G
Asym. Unit
Info
Asym.Unit (335 KB)
Biol.Unit 1 (323 KB)
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(1)
Title
:
X-RAY CRYSTAL STRUCTURE OF ALPHA-LINOLENIC ACID BOUND TO THE CYCLOOXYGENASE CHANNEL OF CYCLOOXYGENASE-2
Authors
:
A. J. Vecchio, M. G. Malkowski
Date
:
06 Mar 12 (Deposition) - 25 Apr 12 (Release) - 01 Aug 12 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.10
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (1x)
Keywords
:
Monotopic Membrane Protein, Biological Dimer, Oxidoreductase, Cox-2, N-Glycosylation, Membrane Of Er
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
A. J. Vecchio, B. J. Orlando, R. Nandagiri, M. G. Malkowski
Investigating Substrate Promiscuity In Cyclooxygenase-2: Th Role Of Arg-120 And Residues Lining The Hydrophobic Groove.
J. Biol. Chem. V. 287 24619 2012
[
close entry info
]
Hetero Components
(7, 25)
Info
All Hetero Components
1a: ACRYLIC ACID (AKRa)
1b: ACRYLIC ACID (AKRb)
2a: B-OCTYLGLUCOSIDE (BOGa)
3a: PROTOPORPHYRIN IX CONTAINING CO (COHa)
3b: PROTOPORPHYRIN IX CONTAINING CO (COHb)
4a: 1,2-ETHANEDIOL (EDOa)
4b: 1,2-ETHANEDIOL (EDOb)
4c: 1,2-ETHANEDIOL (EDOc)
4d: 1,2-ETHANEDIOL (EDOd)
4e: 1,2-ETHANEDIOL (EDOe)
4f: 1,2-ETHANEDIOL (EDOf)
4g: 1,2-ETHANEDIOL (EDOg)
5a: ALPHA-LINOLENIC ACID (LNLa)
5b: ALPHA-LINOLENIC ACID (LNLb)
6a: ALPHA-D-MANNOSE (MANa)
7a: N-ACETYL-D-GLUCOSAMINE (NAGa)
7b: N-ACETYL-D-GLUCOSAMINE (NAGb)
7c: N-ACETYL-D-GLUCOSAMINE (NAGc)
7d: N-ACETYL-D-GLUCOSAMINE (NAGd)
7e: N-ACETYL-D-GLUCOSAMINE (NAGe)
7f: N-ACETYL-D-GLUCOSAMINE (NAGf)
7g: N-ACETYL-D-GLUCOSAMINE (NAGg)
7h: N-ACETYL-D-GLUCOSAMINE (NAGh)
7i: N-ACETYL-D-GLUCOSAMINE (NAGi)
7j: N-ACETYL-D-GLUCOSAMINE (NAGj)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
AKR
2
Ligand/Ion
ACRYLIC ACID
2
BOG
1
Ligand/Ion
B-OCTYLGLUCOSIDE
3
COH
2
Ligand/Ion
PROTOPORPHYRIN IX CONTAINING CO
4
EDO
7
Ligand/Ion
1,2-ETHANEDIOL
5
LNL
2
Ligand/Ion
ALPHA-LINOLENIC ACID
6
MAN
1
Ligand/Ion
ALPHA-D-MANNOSE
7
NAG
10
Ligand/Ion
N-ACETYL-D-GLUCOSAMINE
[
close Hetero Component info
]
Sites
(25, 25)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
19: CC1 (SOFTWARE)
20: CC2 (SOFTWARE)
21: CC3 (SOFTWARE)
22: CC4 (SOFTWARE)
23: CC5 (SOFTWARE)
24: CC6 (SOFTWARE)
25: CC7 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
ARG A:120 , PHE A:205 , PHE A:209 , TYR A:348 , VAL A:349 , TYR A:355 , ILE A:377 , PHE A:381 , TYR A:385 , ALA A:527 , SER A:530 , GLY A:533 , LEU A:534
BINDING SITE FOR RESIDUE LNL A 701
02
AC2
SOFTWARE
ALA A:199 , GLN A:203 , HIS A:207 , PHE A:210 , THR A:212 , HIS A:214 , VAL A:295 , ASN A:382 , TYR A:385 , HIS A:386 , HIS A:388 , LEU A:391 , LEU A:408 , VAL A:447 , HOH A:1080
BINDING SITE FOR RESIDUE COH A 702
03
AC3
SOFTWARE
TYR A:55 , GLU A:67 , ASN A:68 , NAG A:704 , HOH A:882 , HOH A:1078 , HOH A:1162
BINDING SITE FOR RESIDUE NAG A 703
04
AC4
SOFTWARE
NAG A:703 , HOH A:1078 , HOH A:1153
BINDING SITE FOR RESIDUE NAG A 704
05
AC5
SOFTWARE
GLU A:140 , ASN A:144 , TYR A:147 , ARG A:216 , NAG A:706 , HOH A:847 , HOH A:904 , HOH A:914 , HOH A:1077
BINDING SITE FOR RESIDUE NAG A 705
06
AC6
SOFTWARE
ARG A:216 , NAG A:705 , MAN A:707
BINDING SITE FOR RESIDUE NAG A 706
07
AC7
SOFTWARE
NAG A:706 , HOH A:1180
BINDING SITE FOR RESIDUE MAN A 707
08
AC8
SOFTWARE
ASN A:410 , SER A:412 , ILE A:413
BINDING SITE FOR RESIDUE NAG A 708
09
AC9
SOFTWARE
GLU A:179 , LYS A:180 , ARG A:184 , ARG A:185 , ARG A:438 , GLU A:486 , GLU A:490 , GLU B:179 , ARG B:185 , ILE B:442 , GLN B:445
BINDING SITE FOR RESIDUE BOG A 709
10
BC1
SOFTWARE
PRO A:162 , SER A:455 , ARG A:456 , LYS A:459 , TYR A:460 , HOH A:942
BINDING SITE FOR RESIDUE EDO A 710
11
BC2
SOFTWARE
GLU A:308 , ARG A:311 , GLU A:339 , SER A:566 , LEU A:567 , ASN A:570 , ASN A:571 , HOH A:845
BINDING SITE FOR RESIDUE EDO A 711
12
BC3
SOFTWARE
SER A:477 , PHE A:478 , GLU A:479 , LYS A:492 , HOH A:1076
BINDING SITE FOR RESIDUE AKR A 712
13
BC4
SOFTWARE
ASP A:239 , ARG A:240 , LYS A:243 , VAL A:271 , GLU A:272 , HOH A:1114
BINDING SITE FOR RESIDUE AKR A 713
14
BC5
SOFTWARE
ARG B:120 , PHE B:205 , PHE B:209 , TYR B:348 , VAL B:349 , LEU B:352 , TYR B:355 , ILE B:377 , PHE B:381 , TYR B:385 , ALA B:527 , SER B:530 , GLY B:533 , LEU B:534
BINDING SITE FOR RESIDUE LNL B 701
15
BC6
SOFTWARE
ALA B:199 , GLN B:203 , HIS B:207 , PHE B:210 , LYS B:211 , THR B:212 , HIS B:214 , VAL B:295 , ASN B:382 , TYR B:385 , HIS B:386 , TRP B:387 , HIS B:388 , LEU B:391 , LEU B:408 , VAL B:447 , HOH B:1119
BINDING SITE FOR RESIDUE COH B 702
16
BC7
SOFTWARE
TYR B:55 , GLU B:67 , ASN B:68 , NAG B:704 , HOH B:1004
BINDING SITE FOR RESIDUE NAG B 703
17
BC8
SOFTWARE
NAG B:703
BINDING SITE FOR RESIDUE NAG B 704
18
BC9
SOFTWARE
LEU A:238 , GLU B:140 , ASN B:144 , ARG B:216 , NAG B:706 , HOH B:802 , HOH B:916 , HOH B:1019 , HOH B:1117
BINDING SITE FOR RESIDUE NAG B 705
19
CC1
SOFTWARE
ARG B:216 , NAG B:705 , HOH B:1091
BINDING SITE FOR RESIDUE NAG B 706
20
CC2
SOFTWARE
GLN B:406 , ASN B:410 , ILE B:413 , HOH B:937 , HOH B:938 , HOH B:1125
BINDING SITE FOR RESIDUE NAG B 707
21
CC3
SOFTWARE
PRO B:162 , ARG B:456 , LYS B:459 , TYR B:460 , HOH B:914
BINDING SITE FOR RESIDUE EDO B 708
22
CC4
SOFTWARE
ARG B:240 , LYS B:243 , GLN B:270 , VAL B:271 , GLU B:272
BINDING SITE FOR RESIDUE EDO B 709
23
CC5
SOFTWARE
LYS B:251 , TYR B:254 , VAL B:261 , ASN B:310 , HOH B:857 , HOH B:1007
BINDING SITE FOR RESIDUE EDO B 710
24
CC6
SOFTWARE
LEU A:224 , SER B:143 , HOH B:867 , HOH B:911 , HOH B:954 , HOH B:1093
BINDING SITE FOR RESIDUE EDO B 711
25
CC7
SOFTWARE
GLU B:308 , ARG B:311 , GLU B:339 , SER B:566 , LEU B:567 , ASN B:570 , HOH B:854
BINDING SITE FOR RESIDUE EDO B 712
[
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
View:
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Sorry, no Info available
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PROSITE Patterns/Profiles
(1, 2)
Info
All PROSITE Patterns/Profiles
1: PEROXIDASE_3 (A:110-582,B:110-582)
;
View:
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Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
PEROXIDASE_3
PS50292
Animal heme peroxidase superfamily profile.
PGH2_MOUSE
96-598
2
A:110-582
B:110-582
[
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Exons
(0, 0)
Info
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
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CATH Domains
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Pfam Domains
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Sorry, no Info available
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Asymmetric Unit 1
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select all 'ALA' residues (Alanines) in chain 'A'
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select residue range 5 to 10 in all chains
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select residue range 5 to 10 in chain 'A'
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Asym.Unit (335 KB)
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