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4E0X
Biol. Unit 1
Info
Asym.Unit (99 KB)
Biol.Unit 1 (184 KB)
Biol.Unit 2 (94 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF THE KAINATE RECEPTOR GLUK1 LIGAND-BINDING DOMAIN IN COMPLEX WITH KAINATE IN THE ABSENCE OF GLYCEROL
Authors
:
K. Frydenvang, J. S. Kastrup
Date
:
05 Mar 12 (Deposition) - 25 Apr 12 (Release) - 19 Sep 12 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.00
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (2x)
Biol. Unit 2: A,B (1x)
Keywords
:
Ionotropic Glutamate Receptor, Gluk1, Ligand-Binding Domain, Agonist, Membrane Protein
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
R. Venskutonyte, K. Frydenvang, H. Hald, A. C. Rabassa, M. Gajhede, P. K. Ahring, J. S. Kastrup
Kainate Induces Various Domain Closures In Ampa And Kainate Receptors.
Neurochem Int V. 61 536 2012
(for further references see the
PDB file header
)
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Hetero Components
(2, 16)
Info
All Hetero Components
1a: CHLORIDE ION (CLa)
1b: CHLORIDE ION (CLb)
1c: CHLORIDE ION (CLc)
2a: 3-(CARBOXYMETHYL)-4-ISOPROPENYLPRO... (KAIa)
2b: 3-(CARBOXYMETHYL)-4-ISOPROPENYLPRO... (KAIb)
3a: SULFATE ION (SO4a)
3b: SULFATE ION (SO4b)
3c: SULFATE ION (SO4c)
3d: SULFATE ION (SO4d)
3e: SULFATE ION (SO4e)
3f: SULFATE ION (SO4f)
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Label:
No.
Name
Count
Type
Full Name
1
CL
-1
Ligand/Ion
CHLORIDE ION
2
KAI
4
Ligand/Ion
3-(CARBOXYMETHYL)-4-ISOPROPENYLPROLINE
3
SO4
12
Ligand/Ion
SULFATE ION
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Sites
(10, 10)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
GLU A:13 , TYR A:61 , PRO A:88 , LEU A:89 , THR A:90 , ARG A:95 , GLY A:140 , SER A:141 , THR A:142 , SER A:173 , GLU A:190 , HOH A:404 , HOH A:406 , HOH A:413
BINDING SITE FOR RESIDUE KAI A 301
02
AC2
SOFTWARE
ARG A:20 , SER A:22 , LYS B:147 , TRP B:158
BINDING SITE FOR RESIDUE SO4 A 302
03
AC3
SOFTWARE
ARG A:31 , HOH A:474 , HOH A:563 , HOH A:607 , HOH A:619
BINDING SITE FOR RESIDUE SO4 A 303
04
AC4
SOFTWARE
LYS A:103 , HOH A:500 , LYS B:103 , HOH B:483
BINDING SITE FOR RESIDUE CL A 305
05
AC5
SOFTWARE
GLU B:13 , TYR B:61 , PRO B:88 , THR B:90 , ARG B:95 , GLY B:140 , SER B:141 , THR B:142 , GLU B:190 , HOH B:405 , HOH B:408 , HOH B:416
BINDING SITE FOR RESIDUE KAI B 301
06
AC6
SOFTWARE
GLN A:165 , HOH A:598 , ARG B:20 , SER B:22 , LYS B:24 , HOH B:615
BINDING SITE FOR RESIDUE SO4 B 302
07
AC7
SOFTWARE
HOH A:468 , ARG B:31 , VAL B:53 , LYS B:54 , HOH B:472 , HOH B:504 , HOH B:596 , HOH B:634
BINDING SITE FOR RESIDUE SO4 B 303
08
AC8
SOFTWARE
LYS A:116 , ARG B:4 , HIS B:80 , PRO B:225 , HOH B:559
BINDING SITE FOR RESIDUE SO4 B 304
09
AC9
SOFTWARE
LYS A:60 , LYS A:171 , LYS B:171 , HOH B:629
BINDING SITE FOR RESIDUE SO4 B 305
10
BC1
SOFTWARE
ARG B:164
BINDING SITE FOR RESIDUE CL B 306
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are only available for the asymmetric unit)
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PROSITE Patterns/Profiles
(, 0)
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Exons
(0, 0)
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
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SCOP Domains
(1, 2)
Info
All SCOP Domains
1a: SCOP_d4e0xa_ (A:)
1b: SCOP_d4e0xb_ (B:)
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Protein Domains
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Organisms
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Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
Periplasmic binding protein-like II
(813)
Superfamily
:
Periplasmic binding protein-like II
(813)
Family
:
automated matches
(267)
Protein domain
:
automated matches
(267)
Norway rat (Rattus norvegicus) [TaxId: 10116]
(73)
1a
d4e0xa_
A:
1b
d4e0xb_
B:
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CATH Domains
(0, 0)
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Pfam Domains
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Show PDB file:
Asym.Unit (99 KB)
Header - Asym.Unit
Biol.Unit 1 (184 KB)
Header - Biol.Unit 1
Biol.Unit 2 (94 KB)
Header - Biol.Unit 2
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