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4E0N
Asym. Unit
Info
Asym.Unit (34 KB)
Biol.Unit 1 (15 KB)
Biol.Unit 2 (15 KB)
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(1)
Title
:
SVQIVYK SEGMENT FROM HUMAN TAU (305-311) DISPLAYED ON 54-MEMBERED MACROCYCLE SCAFFOLD (FORM II)
Authors
:
M. Zhao, C. Liu, S. R. Michael, D. Eisenberg
Date
:
04 Mar 12 (Deposition) - 19 Dec 12 (Release) - 19 Jun 13 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.65
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A,B (1x)
Biol. Unit 2: C,D (1x)
Keywords
:
Amyloid, Out-Of-Register, Fiber-Forming, Macrocycle, Protein Fibril
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
C. Liu, M. Zhao, L. Jiang, P. N. Cheng, J. Park, M. R. Sawaya, A. Pensalfini, D. Gou, A. J. Berk, C. G. Glabe, J. Nowick, D. Eisenberg
Out-Of-Register Beta-Sheets Suggest A Pathway To Toxic Amyloid Aggregates.
Proc. Natl. Acad. Sci. Usa V. 109 20913 2012
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Hetero Components
(5, 26)
Info
All Hetero Components
1a: 4-BROMO-L-PHENYLALANINE (4BFa)
1b: 4-BROMO-L-PHENYLALANINE (4BFb)
1c: 4-BROMO-L-PHENYLALANINE (4BFc)
1d: 4-BROMO-L-PHENYLALANINE (4BFd)
2a: {[3-(HYDRAZINOCARBONYL)-4-METHOXYP... (HAOa)
2b: {[3-(HYDRAZINOCARBONYL)-4-METHOXYP... (HAOb)
2c: {[3-(HYDRAZINOCARBONYL)-4-METHOXYP... (HAOc)
2d: {[3-(HYDRAZINOCARBONYL)-4-METHOXYP... (HAOd)
3a: (4S)-2-METHYL-2,4-PENTANEDIOL (MPDa)
3b: (4S)-2-METHYL-2,4-PENTANEDIOL (MPDb)
3c: (4S)-2-METHYL-2,4-PENTANEDIOL (MPDc)
3d: (4S)-2-METHYL-2,4-PENTANEDIOL (MPDd)
3e: (4S)-2-METHYL-2,4-PENTANEDIOL (MPDe)
3f: (4S)-2-METHYL-2,4-PENTANEDIOL (MPDf)
4a: L-ORNITHINE (ORNa)
4b: L-ORNITHINE (ORNb)
4c: L-ORNITHINE (ORNc)
4d: L-ORNITHINE (ORNd)
4e: L-ORNITHINE (ORNe)
4f: L-ORNITHINE (ORNf)
4g: L-ORNITHINE (ORNg)
4h: L-ORNITHINE (ORNh)
5a: PHOSPHATE ION (PO4a)
5b: PHOSPHATE ION (PO4b)
5c: PHOSPHATE ION (PO4c)
5d: PHOSPHATE ION (PO4d)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
4BF
4
Mod. Amino Acid
4-BROMO-L-PHENYLALANINE
2
HAO
4
Mod. Amino Acid
{[3-(HYDRAZINOCARBONYL)-4-METHOXYPHENYL]AMINO}(OXO)ACETIC ACID
3
MPD
6
Ligand/Ion
(4S)-2-METHYL-2,4-PENTANEDIOL
4
ORN
8
Mod. Amino Acid
L-ORNITHINE
5
PO4
4
Ligand/Ion
PHOSPHATE ION
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Sites
(9, 9)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
5: AC5 (SOFTWARE)
6: AC6 (SOFTWARE)
7: AC7 (SOFTWARE)
8: AC8 (SOFTWARE)
9: AC9 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
ORN A:0 , HOH A:208 , LYS D:7
BINDING SITE FOR RESIDUE PO4 A 101
2
AC2
SOFTWARE
PHE A:10 , HAO A:11 , 4BF A:12 , HOH A:203 , 4BF B:12
BINDING SITE FOR RESIDUE MPD A 102
3
AC3
SOFTWARE
TYR A:6 , ORN A:8 , HOH A:213 , TYR B:6 , ORN B:8 , HOH B:201 , HOH B:204 , HOH B:209 , PO4 D:102 , HOH D:207
BINDING SITE FOR RESIDUE PO4 B 101
4
AC4
SOFTWARE
4BF A:12 , GLN B:3 , HAO B:11
BINDING SITE FOR RESIDUE MPD B 102
5
AC5
SOFTWARE
TYR C:6 , PHE C:10 , 4BF C:12 , HOH C:204 , VAL D:2 , 4BF D:12
BINDING SITE FOR RESIDUE MPD C 101
6
AC6
SOFTWARE
PHE C:10 , HAO C:11
BINDING SITE FOR RESIDUE MPD C 102
7
AC7
SOFTWARE
TYR C:6 , ORN C:8 , TYR D:6 , ORN D:8 , PO4 D:102 , HOH D:202 , HOH D:209 , HOH D:211 , HOH D:212 , HOH D:216
BINDING SITE FOR RESIDUE PO4 D 101
8
AC8
SOFTWARE
HOH A:204 , ORN B:8 , PO4 B:101 , HOH C:203 , ORN D:8 , PO4 D:101 , HOH D:203 , HOH D:204 , HOH D:207 , HOH D:212
BINDING SITE FOR RESIDUE PO4 D 102
9
AC9
SOFTWARE
GLU D:9 , PHE D:10 , HAO D:11
BINDING SITE FOR RESIDUE MPD D 103
[
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SAPs(SNPs)/Variants
(1, 4)
Info
(mutated residues are not available)
All SNPs/Variants
1: VAR_010350 (S1N, chain A/B/C/D, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_010350
S
622
N
TAU_HUMAN
Disease (FTD)
---
A/B/C/D
S
1
N
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
[
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PROSITE Patterns/Profiles
(1, 4)
Info
All PROSITE Patterns/Profiles
1: TAU_MAP_2 (-|-|A:2-7,B:2-7,C:2-7,D:2-7|-)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
TAU_MAP_2
PS51491
Tau and MAP proteins tubulin-binding repeat profile.
TAU_HUMAN
561-591
592-622
623-653
654-685
4
-
-
A:2-7
B:2-7
C:2-7
D:2-7
-
[
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Exons
(3, 12)
Info
All Exons
Exon 1.13 (A:0-1 | B:0-1 | C:0-1 | D:0-1)
Exon 1.14 (A:2-7 | B:2-7 | C:2-7 | D:2-7)
Exon 1.16c (A:8-13 | B:8-13 | C:8-13 | D:8-13)
View:
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All Exon Boundaries
1: Boundary 1.12/1.13
2: Boundary 1.13/1.14
3: Boundary 1.14/1.15
4: Boundary 1.15/1.16c
5: Boundary 1.16c/-
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1a
ENST00000262410
1a
ENSE00001472062
chr17:
43971750-43972052
303
TAU_HUMAN
-
0
0
-
-
1.2
ENST00000262410
2
ENSE00002145914
chr17:
44039687-44039836
150
TAU_HUMAN
1-45
45
0
-
-
1.3
ENST00000262410
3
ENSE00001778731
chr17:
44049225-44049311
87
TAU_HUMAN
45-74
30
0
-
-
1.5
ENST00000262410
5
ENSE00001792818
chr17:
44051751-44051837
87
TAU_HUMAN
74-103
30
0
-
-
1.6a
ENST00000262410
6a
ENSE00001756827
chr17:
44055741-44055806
66
TAU_HUMAN
103-125
23
0
-
-
1.7
ENST00000262410
7
ENSE00001685489
chr17:
44060544-44061296
753
TAU_HUMAN
125-376
252
0
-
-
1.8
ENST00000262410
8
ENSE00001646830
chr17:
44064406-44064461
56
TAU_HUMAN
376-394
19
0
-
-
1.9
ENST00000262410
9
ENSE00001611830
chr17:
44067244-44067441
198
TAU_HUMAN
395-460
66
0
-
-
1.10
ENST00000262410
10
ENSE00001621851
chr17:
44068826-44068952
127
TAU_HUMAN
461-503
43
0
-
-
1.12
ENST00000262410
12
ENSE00001701464
chr17:
44073765-44074030
266
TAU_HUMAN
503-591
89
0
-
-
1.13
ENST00000262410
13
ENSE00001703790
chr17:
44087676-44087768
93
TAU_HUMAN
592-622
31
4
A:0-1
B:0-1
C:0-1
D:0-1
2
2
2
2
1.14
ENST00000262410
14
ENSE00001682890
chr17:
44091609-44091690
82
TAU_HUMAN
623-650
28
4
A:2-7
B:2-7
C:2-7
D:2-7
6
6
6
6
1.15
ENST00000262410
15
ENSE00001761213
chr17:
44095984-44096096
113
TAU_HUMAN
650-687
38
0
-
-
1.16c
ENST00000262410
16c
ENSE00001291240
chr17:
44101322-44105700
4379
TAU_HUMAN
688-758
71
4
A:8-13
B:8-13
C:8-13
D:8-13
6
6
6
6
[
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SCOP Domains
(0, 0)
Info
All SCOP Domains
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Sorry, no Info available
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CATH Domains
(0, 0)
Info
all CATH domains
View:
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Label:
Sorry, no Info available
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Pfam Domains
(0, 0)
Info
all PFAM domains
View:
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Label:
Sorry, no Info available
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Protein & NOT PROSITE
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Chain D
Asymmetric Unit 1
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Asym.Unit (34 KB)
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