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Getting 'Biological Unit' information from database.
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Getting 'Hetero Component' information from database.
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Getting 'Exon' information from database.
4DZ8
Asym. Unit
Info
Asym.Unit (161 KB)
Biol.Unit 1 (155 KB)
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(1)
Title
:
HUMAN IGG1 FC FRAGMENT HETERODIMER
Authors
:
P. Strop
Date
:
29 Feb 12 (Deposition) - 01 Aug 12 (Release) - 01 Aug 12 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.91
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (1x)
Keywords
:
Fc Fragment, Antibody, Immune System
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
P. Strop, W. H. Ho, L. M. Boustany, Y. N. Abdiche, K. C. Lindquist, S. E. Farias, M. Rickert, C. T. Appah, E. Pascua, T. Radcliffe, J. Sutton, J. Chaparro-Riggers, W. Chen, M. G. Casas, S. M. Chin, O. K. Wong, S. H. Liu, G. Vergara, D. Shelton, A. Rajpal, J. Pons
Generating Bispecific Human Igg1 And Igg2 Antibodies From Any Antibody Pair.
J. Mol. Biol. V. 420 204 2012
[
close entry info
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Hetero Components
(4, 16)
Info
All Hetero Components
1a: BETA-D-MANNOSE (BMAa)
1b: BETA-D-MANNOSE (BMAb)
2a: ALPHA-L-FUCOSE (FUCa)
2b: ALPHA-L-FUCOSE (FUCb)
3a: ALPHA-D-MANNOSE (MANa)
3b: ALPHA-D-MANNOSE (MANb)
3c: ALPHA-D-MANNOSE (MANc)
3d: ALPHA-D-MANNOSE (MANd)
4a: N-ACETYL-D-GLUCOSAMINE (NAGa)
4b: N-ACETYL-D-GLUCOSAMINE (NAGb)
4c: N-ACETYL-D-GLUCOSAMINE (NAGc)
4d: N-ACETYL-D-GLUCOSAMINE (NAGd)
4e: N-ACETYL-D-GLUCOSAMINE (NAGe)
4f: N-ACETYL-D-GLUCOSAMINE (NAGf)
4g: N-ACETYL-D-GLUCOSAMINE (NAGg)
4h: N-ACETYL-D-GLUCOSAMINE (NAGh)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
BMA
2
Ligand/Ion
BETA-D-MANNOSE
2
FUC
2
Ligand/Ion
ALPHA-L-FUCOSE
3
MAN
4
Ligand/Ion
ALPHA-D-MANNOSE
4
NAG
8
Ligand/Ion
N-ACETYL-D-GLUCOSAMINE
[
close Hetero Component info
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Sites
(16, 16)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
ASP A:265 , GLN A:295 , ASN A:297 , THR A:299 , NAG A:502 , FUC A:508 , HOH A:654
BINDING SITE FOR RESIDUE NAG A 501
02
AC2
SOFTWARE
PHE A:241 , VAL A:264 , ARG A:301 , NAG A:501 , BMA A:503 , MAN A:506 , HOH A:659 , HOH A:739
BINDING SITE FOR RESIDUE NAG A 502
03
AC3
SOFTWARE
PHE A:241 , PHE A:243 , NAG A:502 , MAN A:504 , MAN A:506 , HOH A:629 , HOH A:716 , HOH A:721 , HOH A:750 , HOH A:829 , HOH B:639
BINDING SITE FOR RESIDUE BMA A 503
04
AC4
SOFTWARE
PHE A:241 , BMA A:503 , NAG A:505 , HOH A:746 , HOH A:856 , BMA B:503 , MAN B:504 , HOH B:734
BINDING SITE FOR RESIDUE MAN A 504
05
AC5
SOFTWARE
MAN A:504
BINDING SITE FOR RESIDUE NAG A 505
06
AC6
SOFTWARE
NAG A:502 , BMA A:503 , NAG A:507 , HOH A:668 , HOH A:724 , HOH A:742 , HOH A:803
BINDING SITE FOR RESIDUE MAN A 506
07
AC7
SOFTWARE
PHE A:243 , LYS A:246 , MAN A:506 , HOH A:701 , HOH A:803 , HOH A:854 , ASN B:384
BINDING SITE FOR RESIDUE NAG A 507
08
AC8
SOFTWARE
ASN A:297 , NAG A:501 , HOH A:659 , HOH A:744
BINDING SITE FOR RESIDUE FUC A 508
09
AC9
SOFTWARE
ASP B:265 , ASN B:297 , NAG B:502 , FUC B:508
BINDING SITE FOR RESIDUE NAG B 501
10
BC1
SOFTWARE
PHE B:241 , ARG B:301 , NAG B:501 , BMA B:503 , MAN B:506
BINDING SITE FOR RESIDUE NAG B 502
11
BC2
SOFTWARE
MAN A:504 , HOH A:746 , PHE B:241 , PHE B:243 , NAG B:502 , MAN B:504 , MAN B:506 , HOH B:734 , HOH B:741
BINDING SITE FOR RESIDUE BMA B 503
12
BC3
SOFTWARE
MAN A:504 , HOH A:629 , BMA B:503 , NAG B:505 , HOH B:639
BINDING SITE FOR RESIDUE MAN B 504
13
BC4
SOFTWARE
MAN B:504
BINDING SITE FOR RESIDUE NAG B 505
14
BC5
SOFTWARE
PHE B:243 , NAG B:502 , BMA B:503 , NAG B:507 , HOH B:634 , HOH B:674
BINDING SITE FOR RESIDUE MAN B 506
15
BC6
SOFTWARE
PHE B:243 , THR B:260 , ARG B:301 , MAN B:506 , HOH B:644 , HOH B:698
BINDING SITE FOR RESIDUE NAG B 507
16
BC7
SOFTWARE
NAG B:501
BINDING SITE FOR RESIDUE FUC B 508
[
close Site info
]
SAPs(SNPs)/Variants
(2, 4)
Info
(mutated residues are not available)
All SNPs/Variants
1: VAR_003887 (D356E, chain A/B, )
2: VAR_003888 (L358M, chain A/B, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_003887
D
239
E
IGHG1_HUMAN
Unclassified
---
A/B
D
356
E
2
UniProt
VAR_003888
L
241
M
IGHG1_HUMAN
Unclassified
---
A/B
L
358
M
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
[
close SNP/Variant info
]
PROSITE Patterns/Profiles
(1, 2)
Info
All PROSITE Patterns/Profiles
1: IG_MHC (-|A:423-429,B:423-429)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
IG_MHC
PS00290
Immunoglobulins and major histocompatibility complex proteins signature.
IGHG1_HUMAN
81-87
306-312
2
-
A:423-429
B:423-429
[
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Exons
(2, 4)
Info
All Exons
Exon 1.3b (A:236-341 | B:239-341)
Exon 1.4c (A:341-444 | B:341-443)
View:
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All Exon Boundaries
1: Boundary 1.2/1.3b
2: Boundary 1.3b/1.4c
3: Boundary 1.4c/-
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1
ENST00000390549
1
ENSE00001838294
chr14:
106209408-106209114
295
IGHG1_HUMAN
1-99
99
0
-
-
1.2
ENST00000390549
2
ENSE00001719055
chr14:
106208722-106208678
45
IGHG1_HUMAN
99-114
16
0
-
-
1.3b
ENST00000390549
3b
ENSE00001776617
chr14:
106208559-106208230
330
IGHG1_HUMAN
114-224
111
2
A:236-341
B:239-341
106
103
1.4c
ENST00000390549
4c
ENSE00001837466
chr14:
106208132-106207675
458
IGHG1_HUMAN
224-330
107
2
A:341-444
B:341-443
106
105
[
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]
SCOP Domains
(2, 4)
Info
All SCOP Domains
1a: SCOP_d4dz8a1 (A:236-339)
1b: SCOP_d4dz8b1 (B:239-339)
2a: SCOP_d4dz8a2 (A:340-444)
2b: SCOP_d4dz8b2 (B:340-443)
View:
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Classes
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Folds
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(
)
Superfamilies
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(
)
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(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All beta proteins
(24004)
Fold
:
Immunoglobulin-like beta-sandwich
(7299)
Superfamily
:
Immunoglobulin
(5995)
Family
:
C1 set domains (antibody constant domain-like)
(3013)
Protein domain
:
Immunoglobulin heavy chain gamma constant domain 2, CH2-gamma
(36)
Human (Homo sapiens) [TaxId: 9606]
(31)
1a
d4dz8a1
A:236-339
1b
d4dz8b1
B:239-339
Protein domain
:
Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma
(38)
Human (Homo sapiens) [TaxId: 9606]
(31)
2a
d4dz8a2
A:340-444
2b
d4dz8b2
B:340-443
[
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]
CATH Domains
(0, 0)
Info
all CATH domains
View:
Select:
Label:
Sorry, no Info available
[
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]
Pfam Domains
(0, 0)
Info
all PFAM domains
View:
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Label:
Sorry, no Info available
[
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Nucleic
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All Atoms
Protein & NOT Variant
Protein & NOT Site
Protein & NOT PROSITE
Chain A
Chain B
Asymmetric Unit 1
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select residue range 5 to 10 in all chains
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select residue range 5 to 10 in chain 'A'
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Asym.Unit (161 KB)
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