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Asym. Unit
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Asym.Unit (108 KB)
Biol.Unit 1 (202 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF THE ACVR1 KINASE DOMAIN IN COMPLEX WITH THE IMIDAZO[1,2-B]PYRIDAZINE INHIBITOR K00135
Authors
:
A. Chaikuad, C. Sanvitale, C. Cooper, P. Canning, P. Mahajan, N. Daga, K I. Alfano, O. Gileadi, O. Fedorov, T. Krojer, P. Filippakopoulos, J. R F. Von Delft, J. Weigelt, C. H. Arrowsmith, A. M. Edwards, C. Bountra, A. Bullock, Structural Genomics Consortium (Sgc)
Date
:
29 Feb 12 (Deposition) - 21 Mar 12 (Release) - 21 Mar 12 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.42
Chains
:
Asym. Unit : A
Biol. Unit 1: A (2x)
Keywords
:
Structural Genomics, Structural Genomics Consortium, Sgc, Protein Kinase, Transferase-Transferase Inhibitor Complex
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
A. Chaikuad, C. Sanvitale, C. Cooper, P. Canning, P. Mahajan, N. Daga, K. Petrie, I. Alfano, O. Gileadi, O. Fedorov, T. Krojer, P. Filippakopoulos, J. R. C. Muniz, F. Von Delft, J. Weigelt, C. H. Arrowsmith, A. M. Edwards, C. Bountra, A. Bullock, Structural Genomics Consortium (Sgc)
Crystal Structure Of The Acvr1 Kinase Domain In Complex Wit The Imidazo[1, 2-B]Pyridazine Inhibitor K00135
To Be Published
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Hetero Components
(3, 7)
Info
All Hetero Components
1a: GLYCEROL (GOLa)
1b: GLYCEROL (GOLb)
1c: GLYCEROL (GOLc)
1d: GLYCEROL (GOLd)
2a: 1-(3-{6-[(CYCLOPROPYLMETHYL)AMINO]... (IYZa)
3a: SULFATE ION (SO4a)
3b: SULFATE ION (SO4b)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
GOL
4
Ligand/Ion
GLYCEROL
2
IYZ
1
Ligand/Ion
1-(3-{6-[(CYCLOPROPYLMETHYL)AMINO]IMIDAZO[1,2-B]PYRIDAZIN-3-YL}PHENYL)ETHANONE
3
SO4
2
Ligand/Ion
SULFATE ION
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Sites
(7, 7)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
5: AC5 (SOFTWARE)
6: AC6 (SOFTWARE)
7: AC7 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
ARG A:380 , ASN A:437 , ASP A:438 , HOH A:647 , HOH A:660
BINDING SITE FOR RESIDUE SO4 A 501
2
AC2
SOFTWARE
HIS A:286 , LYS A:345 , LYS A:346 , HOH A:661 , HOH A:682 , HOH A:683
BINDING SITE FOR RESIDUE SO4 A 502
3
AC3
SOFTWARE
ALA A:233 , LEU A:263 , THR A:283 , HIS A:284 , TYR A:285 , HIS A:286 , GLY A:289 , SER A:290 , LYS A:340 , LEU A:343 , ALA A:353 , GOL A:505
BINDING SITE FOR RESIDUE IYZ A 503
4
AC4
SOFTWARE
ARG A:416 , GLU A:425 , TYR A:432 , HOH A:686
BINDING SITE FOR RESIDUE GOL A 504
5
AC5
SOFTWARE
TYR A:219 , LYS A:235 , LYS A:338 , ASN A:341 , ASP A:354 , IYZ A:503 , GOL A:507 , HOH A:639
BINDING SITE FOR RESIDUE GOL A 505
6
AC6
SOFTWARE
TYR A:432 , ASP A:433
BINDING SITE FOR RESIDUE GOL A 506
7
AC7
SOFTWARE
ARG A:218 , TYR A:219 , GOL A:505 , HOH A:639
BINDING SITE FOR RESIDUE GOL A 507
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SAPs(SNPs)/Variants
(6, 6)
Info
(mutated residues are not available)
All SNPs/Variants
1: VAR_058420 (Q207E, chain A, )
2: VAR_058421 (G328E, chain A, )
3: VAR_058422 (G328R, chain A, )
4: VAR_058423 (G328W, chain A, )
5: VAR_058424 (G356D, chain A, )
6: VAR_058425 (R375P, chain A, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_058420
Q
207
E
ACVR1_HUMAN
Disease (FOP)
---
A
Q
207
E
2
UniProt
VAR_058421
G
328
E
ACVR1_HUMAN
Disease (FOP)
---
A
G
328
E
3
UniProt
VAR_058422
G
328
R
ACVR1_HUMAN
Disease (FOP)
---
A
G
328
R
4
UniProt
VAR_058423
G
328
W
ACVR1_HUMAN
Disease (FOP)
---
A
G
328
W
5
UniProt
VAR_058424
G
356
D
ACVR1_HUMAN
Disease (FOP)
---
A
G
356
D
6
UniProt
VAR_058425
R
375
P
ACVR1_HUMAN
Disease (FOP)
---
A
R
375
P
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
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PROSITE Patterns/Profiles
(2, 2)
Info
All PROSITE Patterns/Profiles
1: PROTEIN_KINASE_ATP (A:214-235)
2: PROTEIN_KINASE_ST (A:332-344)
;
View:
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Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
PROTEIN_KINASE_ATP
PS00107
Protein kinases ATP-binding region signature.
ACVR1_HUMAN
214-235
1
A:214-235
2
PROTEIN_KINASE_ST
PS00108
Serine/Threonine protein kinases active-site signature.
ACVR1_HUMAN
332-344
1
A:332-344
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Exons
(0, 0)
Info
All Exons
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 1)
Info
All SCOP Domains
1a: SCOP_d4dyma_ (A:)
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Classes
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)
Protein Domains
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Organisms
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Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
Protein kinase-like (PK-like)
(2589)
Superfamily
:
Protein kinase-like (PK-like)
(2589)
Family
:
Protein kinases, catalytic subunit
(1977)
Protein domain
:
automated matches
(542)
Human (Homo sapiens) [TaxId: 9606]
(452)
1a
d4dyma_
A:
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CATH Domains
(0, 0)
Info
all CATH domains
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Pfam Domains
(0, 0)
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Sorry, no Info available
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Chain A
Asymmetric Unit 1
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