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4DYD
Asym. Unit
Info
Asym.Unit (53 KB)
Biol.Unit 1 (93 KB)
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(1)
Title
:
SUBSTRATE-DIRECTED DUAL CATALYSIS OF DICARBONYL COMPOUNDS BY DIKETOREDUCTASE
Authors
:
M. Lu, M. A. White, Y. Huang, X. Wu, N. Liu, X. Cheng, Y. Chen
Date
:
28 Feb 12 (Deposition) - 14 Nov 12 (Release) - 14 Nov 12 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.95
Chains
:
Asym. Unit : A
Biol. Unit 1: A (2x)
Keywords
:
Oxidoreductase, Nadh
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
M. Lu, Y. Huang, M. A. White, X. Wu, N. Liu, X. Cheng, Y. Chen
Dual Catalysis Mode For The Dicarbonyl Reduction Catalyzed By Diketoreductase
Chem. Commun. (Camb. ) V. 48 11352 2012
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Hetero Components
(4, 14)
Info
All Hetero Components
1a: GLYCEROL (GOLa)
1b: GLYCEROL (GOLb)
1c: GLYCEROL (GOLc)
1d: GLYCEROL (GOLd)
1e: GLYCEROL (GOLe)
1f: GLYCEROL (GOLf)
1g: GLYCEROL (GOLg)
1h: GLYCEROL (GOLh)
1i: GLYCEROL (GOLi)
1j: GLYCEROL (GOLj)
2a: NICOTINAMIDE-ADENINE-DINUCLEOTIDE (NADa)
3a: PHOSPHATE ION (PO4a)
3b: PHOSPHATE ION (PO4b)
4a: SULFATE ION (SO4a)
View:
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Label:
No.
Name
Count
Type
Full Name
1
GOL
10
Ligand/Ion
GLYCEROL
2
NAD
1
Ligand/Ion
NICOTINAMIDE-ADENINE-DINUCLEOTIDE
3
PO4
2
Ligand/Ion
PHOSPHATE ION
4
SO4
1
Ligand/Ion
SULFATE ION
[
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Sites
(14, 14)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
View:
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No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
GLY A:11 , THR A:12 , GLY A:13 , VAL A:14 , LEU A:15 , ASP A:34 , ILE A:35 , ALA A:92 , VAL A:93 , PRO A:94 , GLU A:95 , LEU A:99 , LYS A:100 , ILE A:103 , ASN A:120 , SER A:121 , SER A:122 , HIS A:143 , PHE A:144 , ARG A:256 , HOH A:408
BINDING SITE FOR RESIDUE NAD A 301
02
AC2
SOFTWARE
SER A:76 , ASP A:77 , ASP A:78 , GLN A:81
BINDING SITE FOR RESIDUE GOL A 302
03
AC3
SOFTWARE
GLY A:225
BINDING SITE FOR RESIDUE GOL A 303
04
AC4
SOFTWARE
GLU A:234 , ARG A:282
BINDING SITE FOR RESIDUE GOL A 304
05
AC5
SOFTWARE
LEU A:201 , ASP A:202 , PHE A:236 , ALA A:244 , ILE A:247 , SER A:248
BINDING SITE FOR RESIDUE GOL A 305
06
AC6
SOFTWARE
THR A:37 , ASP A:77 , LYS A:106
BINDING SITE FOR RESIDUE GOL A 306
07
AC7
SOFTWARE
PHE A:25 , GLY A:277 , TYR A:283
BINDING SITE FOR RESIDUE GOL A 307
08
AC8
SOFTWARE
THR A:160 , LYS A:161 , GOL A:309
BINDING SITE FOR RESIDUE GOL A 308
09
AC9
SOFTWARE
THR A:159 , THR A:160 , LYS A:185 , LYS A:186 , GLU A:187 , GOL A:308
BINDING SITE FOR RESIDUE GOL A 309
10
BC1
SOFTWARE
ALA A:113
BINDING SITE FOR RESIDUE GOL A 310
11
BC2
SOFTWARE
HIS A:26 , GLY A:27
BINDING SITE FOR RESIDUE GOL A 311
12
BC3
SOFTWARE
GLY A:240 , LEU A:241 , THR A:242 , THR A:243 , LYS A:263 , LEU A:272 , HOH A:416 , HOH A:432
BINDING SITE FOR RESIDUE SO4 A 312
13
BC4
SOFTWARE
VAL A:14 , GLN A:18 , LYS A:56 , ASN A:146 , HIS A:147
BINDING SITE FOR RESIDUE PO4 A 313
14
BC5
SOFTWARE
LEU A:40 , ASP A:41 , TYR A:75
BINDING SITE FOR RESIDUE PO4 A 314
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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PROSITE Patterns/Profiles
(0, 0)
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Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(2, 2)
Info
All SCOP Domains
1a: SCOP_d4dyda2 (A:190-283)
2a: SCOP_d4dyda1 (A:1-189)
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Classes
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)
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)
Protein Domains
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)
(
)
Organisms
(
)
(
)
Class
:
All alpha proteins
(14657)
Fold
:
6-phosphogluconate dehydrogenase C-terminal domain-like
(119)
Superfamily
:
6-phosphogluconate dehydrogenase C-terminal domain-like
(119)
Family
:
automated matches
(50)
Protein domain
:
automated matches
(50)
Acinetobacter baylyi [TaxId: 202950]
(3)
1a
d4dyda2
A:190-283
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
NAD(P)-binding Rossmann-fold domains
(1604)
Superfamily
:
NAD(P)-binding Rossmann-fold domains
(1604)
Family
:
automated matches
(447)
Protein domain
:
automated matches
(447)
Acinetobacter baylyi [TaxId: 202950]
(3)
2a
d4dyda1
A:1-189
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CATH Domains
(0, 0)
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all CATH domains
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Pfam Domains
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Chain A
Asymmetric Unit 1
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Asym.Unit (53 KB)
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