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Getting 'Exon' information from database.
4DX7
Asym. Unit
Info
Asym.Unit (1.2 MB)
Biol.Unit 1, α-C (1.1 MB)
Biol.Unit 1 (1.1 MB)
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(1)
Title
:
TRANSPORT OF DRUGS BY THE MULTIDRUG TRANSPORTER ACRB INVOLVES AN ACCESS AND A DEEP BINDING POCKET THAT ARE SEPARATED BY A SWITCH-LOOP
Authors
:
T. Eicher, H. Cha, M. A. Seeger, L. Brandstaetter, J. El-Delik, J. A. Boh W. V. Kern, F. Verrey, M. G. Gruetter, K. Diederichs, K. M. Pos
Date
:
27 Feb 12 (Deposition) - 02 May 12 (Release) - 29 Jan 14 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.25
Chains
:
Asym. Unit : A,B,C,D,E
Biol. Unit 1: A,B,C,D,E (1x)
Keywords
:
Darpin, Multidrug Efflux Protein, Membrane Protein, Transport Protein
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
T. Eicher, H. J. Cha, M. A. Seeger, L. Brandstatter, J. El-Delik, J. A. Bohnert, W. V. Kern, F. Verrey, M. G. Grutter, K. Diederichs, K. M. Pos
Transport Of Drugs By The Multidrug Transporter Acrb Involves An Access And A Deep Binding Pocket That Are Separated By A Switch-Loop.
Proc. Natl. Acad. Sci. Usa V. 109 5687 2012
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Hetero Components
(7, 24)
Info
All Hetero Components
1a: DECANE (D10a)
1b: DECANE (D10b)
1c: DECANE (D10c)
1d: DECANE (D10d)
2a: DODECANE (D12a)
2b: DODECANE (D12b)
2c: DODECANE (D12c)
2d: DODECANE (D12d)
3a: DOXORUBICIN (DM2a)
3b: DOXORUBICIN (DM2b)
3c: DOXORUBICIN (DM2c)
4a: GLYCEROL (GOLa)
4b: GLYCEROL (GOLb)
4c: GLYCEROL (GOLc)
5a: HEXANE (HEXa)
5b: HEXANE (HEXb)
6a: DODECYL-BETA-D-MALTOSIDE (LMTa)
6b: DODECYL-BETA-D-MALTOSIDE (LMTb)
6c: DODECYL-BETA-D-MALTOSIDE (LMTc)
6d: DODECYL-BETA-D-MALTOSIDE (LMTd)
6e: DODECYL-BETA-D-MALTOSIDE (LMTe)
6f: DODECYL-BETA-D-MALTOSIDE (LMTf)
6g: DODECYL-BETA-D-MALTOSIDE (LMTg)
7a: DODECYL-ALPHA-D-MALTOSIDE (LMUa)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
D10
4
Ligand/Ion
DECANE
2
D12
4
Ligand/Ion
DODECANE
3
DM2
3
Ligand/Ion
DOXORUBICIN
4
GOL
3
Ligand/Ion
GLYCEROL
5
HEX
2
Ligand/Ion
HEXANE
6
LMT
7
Ligand/Ion
DODECYL-BETA-D-MALTOSIDE
7
LMU
1
Ligand/Ion
DODECYL-ALPHA-D-MALTOSIDE
[
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Sites
(22, 22)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
19: CC1 (SOFTWARE)
20: CC2 (SOFTWARE)
21: CC3 (SOFTWARE)
22: CC4 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
LEU A:28 , VAL A:32 , VAL A:341 , PRO A:373 , PHE A:380 , HOH A:1304 , HOH A:1410 , LMT B:1101
BINDING SITE FOR RESIDUE LMT A 1101
02
AC2
SOFTWARE
PHE A:556 , SER A:561 , TYR A:877 , LEU A:881 , VAL A:884 , GLN A:928 , HOH A:1581
BINDING SITE FOR RESIDUE LMT A 1102
03
AC3
SOFTWARE
GLY A:440 , GLY A:444 , ALA A:890 , LEU A:891 , ARG C:8
BINDING SITE FOR RESIDUE LMT A 1103
04
AC4
SOFTWARE
ILE A:335 , HIS A:338 , GLU A:339 , ILE A:349 , ASP A:633 , HOH A:1275
BINDING SITE FOR RESIDUE LMT A 1104
05
AC5
SOFTWARE
MET A:575 , GLY A:616 , PHE A:617 , THR A:676 , ASP A:681 , ARG A:717 , ASN A:719 , GLU A:826 , MET A:862 , DM2 A:1106 , HOH A:1532 , HOH A:1617
BINDING SITE FOR RESIDUE DM2 A 1105
06
AC6
SOFTWARE
MET A:575 , PHE A:617 , PHE A:664 , PHE A:666 , THR A:676 , GLN A:830 , DM2 A:1105 , HOH A:1564 , HOH A:1609 , HOH A:1692
BINDING SITE FOR RESIDUE DM2 A 1106
07
AC7
SOFTWARE
ARG A:8 , HOH B:1683
BINDING SITE FOR RESIDUE D12 A 1107
08
AC8
SOFTWARE
TRP A:895 , D10 A:1109
BINDING SITE FOR RESIDUE D10 A 1108
09
AC9
SOFTWARE
PHE A:885 , TRP A:895 , D10 A:1108
BINDING SITE FOR RESIDUE D10 A 1109
10
BC1
SOFTWARE
LEU A:28 , LMT A:1101 , PHE B:458 , ASN B:871 , GLN B:872 , SER B:875 , LEU B:876
BINDING SITE FOR RESIDUE LMT B 1101
11
BC2
SOFTWARE
SER B:530 , GLY B:533 , ARG B:536 , SER B:537 , ARG B:540 , TYR B:541
BINDING SITE FOR RESIDUE LMT B 1102
12
BC3
SOFTWARE
ASP B:566 , PHE B:617 , PHE B:628 , PHE B:664 , PHE B:666 , ASN B:667 , LEU B:668 , PRO B:669 , VAL B:672 , HOH B:1549 , HOH B:1645
BINDING SITE FOR RESIDUE LMU B 1103
13
BC4
SOFTWARE
GLN B:89 , GLU B:130 , GLN B:176 , PHE B:178 , GLY B:179 , ILE B:277 , VAL B:612 , PHE B:615 , HOH B:1692
BINDING SITE FOR RESIDUE DM2 B 1104
14
BC5
SOFTWARE
TRP C:895
BINDING SITE FOR RESIDUE D10 B 1105
15
BC6
SOFTWARE
ARG B:239 , TYR B:758 , ASN B:760 , ASP B:761 , HOH B:1457 , PRO C:119 , GLN C:120
BINDING SITE FOR RESIDUE GOL B 1106
16
BC7
SOFTWARE
PRO B:783 , SER B:805 , SER B:806 , SER B:807 , HOH B:1357
BINDING SITE FOR RESIDUE GOL B 1107
17
BC8
SOFTWARE
LYS B:29 , PHE C:458
BINDING SITE FOR RESIDUE D12 B 1109
18
BC9
SOFTWARE
SER C:530 , GLY C:533 , ARG C:536 , SER C:537 , ARG C:540 , TYR C:541 , PHE C:1020 , HOH C:1540
BINDING SITE FOR RESIDUE LMT C 1101
19
CC1
SOFTWARE
TRP C:895
BINDING SITE FOR RESIDUE D12 C 1102
20
CC2
SOFTWARE
ARG C:185 , GLU C:273 , ASN C:274 , GLY C:755 , GLY C:756 , TYR C:772 , HOH C:1340
BINDING SITE FOR RESIDUE GOL C 1103
21
CC3
SOFTWARE
LYS B:29 , PHE C:458
BINDING SITE FOR RESIDUE D10 C 1104
22
CC4
SOFTWARE
TRP C:13
BINDING SITE FOR RESIDUE D12 C 1106
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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PROSITE Patterns/Profiles
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Exons
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
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CATH Domains
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Pfam Domains
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Sorry, no Info available
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Asymmetric Unit 1
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select :A, :C
select chains 'A' and 'C'
select [ALA]:A
select all 'ALA' residues (Alanines) in chain 'A'
select 5-10
select residue range 5 to 10 in all chains
select 5-10:A
select residue range 5 to 10 in chain 'A'
select protein & not helix & not sheet
select non-helix/non-sheet protein parts
set fontsize 20
set label size to 20 (allowed range: 1-58)
ssbonds 100
show SS bonds with a radius of 100 units (=0.4Å)
wireframe 100
show bonds with a radius of 100 units (=0.4Å)
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Note:
In this "Basic Interface" any change in the selection of a pulldown menu automatically triggers an action (one-step mechanism).
View and selection are coupled in the structure specific controls (e.g. "Hetero","PROSITE") .
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In this "Advanced Interface" any change in the selection of a pulldown menu only sets the target for the corresponding control buttons (two-step mechanism).
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