PLEASE WAIT...
Getting 'Biological Unit' information from database.
PLEASE WAIT...
Getting 'Hetero Component' information from database.
PLEASE WAIT...
Getting 'Site' information from database.
PLEASE WAIT...
Getting 'PROSITE' information from database.
PLEASE WAIT...
Getting 'Exon' information from database.
4DWK
Asym. Unit
Info
Asym.Unit (325 KB)
Biol.Unit 1 (162 KB)
Biol.Unit 2 (161 KB)
Biol.Unit 3 (317 KB)
(using Jmol or JSmol)
spin
show selected part
auto zoom/center
Standard Views
(
Basic
|
Advanced
Interface
)
(
Basic
|
Advanced
Interface
)
Help
(1)
Title
:
STRUCTURE OF CYSTEIN FREE INSULIN DEGRADING ENZYME WITH COMPOUND BDM41671 ((S)-2-{2-[CARBOXYMETHYL-(3-PHENYL-PROPYL)-AMINO]-ACETYLAMINO}-3-(1H-IMIDAZOL-4-YL)-PROPIONIC ACID METHYL ESTER)
Authors
:
Q. Guo, R. Deprez-Poulain, B. Deprez, W. J. Tang
Date
:
24 Feb 12 (Deposition) - 03 Apr 13 (Release) - 28 May 14 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
3.00
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Biol. Unit 3: A,B (1x)
Keywords
:
Metalloendopeptidase, Hydrolase-Hydrolase Inhibitor Complex
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
J. Charton, M. Gauriot, Q. Guo, N. Hennuyer, X. Marechal, J. Dumont, M. Hamdane, V. Pottiez, V. Landry, O. Sperandio, M. Flipo, L. Buee, B. Staels, F. Leroux, W. J. Tang, B. Deprez, R. Deprez-Poulain
Imidazole-Derived 2-[N-Carbamoylmethyl-Alkylamino]Acetic Acids, Substrate-Dependent Modulators Of Insulin-Degrading Enzyme In Amyloid-Beta Hydrolysis.
Eur. J. Med. Chem. V. 79 184 2014
[
close entry info
]
Hetero Components
(2, 4)
Info
All Hetero Components
1a: METHYL N-(CARBOXYMETHYL)-N-(3-PHEN... (MGKa)
1b: METHYL N-(CARBOXYMETHYL)-N-(3-PHEN... (MGKb)
2a: ZINC ION (ZNa)
2b: ZINC ION (ZNb)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
MGK
2
Ligand/Ion
METHYL N-(CARBOXYMETHYL)-N-(3-PHENYLPROPYL)GLYCYL-L-HISTIDINATE
2
ZN
2
Ligand/Ion
ZINC ION
[
close Hetero Component info
]
Sites
(4, 4)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
HIS A:332 , GLY A:335 , HIS A:336 , GLY A:339 , GLU A:341 , LEU A:359 , GLY A:361 , GLN A:363 , HOH A:1219
BINDING SITE FOR RESIDUE MGK A 1101
2
AC2
SOFTWARE
HIS A:108 , HIS A:112 , GLU A:189 , HOH A:1234
BINDING SITE FOR RESIDUE ZN A 1102
3
AC3
SOFTWARE
HIS B:332 , GLY B:339 , GLU B:341 , LEU B:359 , VAL B:360 , GLY B:361 , GLN B:363
BINDING SITE FOR RESIDUE MGK B 1101
4
AC4
SOFTWARE
HIS B:108 , HIS B:112 , GLU B:189 , HOH B:1207
BINDING SITE FOR RESIDUE ZN B 1102
[
close Site info
]
SAPs(SNPs)/Variants
(1, 2)
Info
(mutated residues are not available)
All SNPs/Variants
1: VAR_051571 (E612K, chain A/B, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_051571
E
612
K
IDE_HUMAN
Polymorphism
2229708
A/B
E
612
K
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
[
close SNP/Variant info
]
PROSITE Patterns/Profiles
(1, 2)
Info
All PROSITE Patterns/Profiles
1: INSULINASE (A:95-118,B:95-118)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
INSULINASE
PS00143
Insulinase family, zinc-binding region signature.
IDE_HUMAN
95-118
2
A:95-118
B:95-118
[
close PROSITE info
]
Exons
(24, 48)
Info
All Exons
Exon 1.7 (A:42-95 | B:44-95)
Exon 1.8 (A:95-164 | B:95-164)
Exon 1.9 (A:164-221 | B:164-221)
Exon 1.10 (A:221-262 | B:221-262)
Exon 1.11b (A:262-299 | B:262-299)
Exon 1.12 (A:300-354 | B:300-354)
Exon 1.13 (A:354-385 | B:354-385)
Exon 1.14 (A:385-415 | B:385-415)
Exon 1.15 (A:416-442 | B:416-442)
Exon 1.16 (A:443-477 | B:443-477)
Exon 1.18 (A:477-511 | B:477-511)
Exon 1.19 (A:512-552 | B:512-552)
Exon 1.20 (A:553-580 | B:553-580)
Exon 1.22c (A:580-628 | B:580-628)
Exon 1.24c (A:629-665 | B:629-665)
Exon 1.25a (A:666-706 | B:666-706)
Exon 1.26 (A:706-736 | B:706-736)
Exon 1.27 (A:737-774 | B:737-774)
Exon 1.28 (A:774-830 | B:774-830)
Exon 1.29 (A:830-921 | B:830-921)
Exon 1.30 (A:921-941 | B:921-941)
Exon 1.31 (A:942-963 | B:942-965)
Exon 1.32 (A:979-988 | B:979-988)
Exon 1.33b (A:989-1011 | B:989-1011)
View:
Select:
Label:
All Exon Boundaries
01: Boundary 1.1a/1.7
02: Boundary 1.7/1.8
03: Boundary 1.8/1.9
04: Boundary 1.9/1.10
05: Boundary 1.10/1.11b
06: Boundary 1.11b/1.12
07: Boundary 1.12/1.13
08: Boundary 1.13/1.14
09: Boundary 1.14/1.15
10: Boundary 1.15/1.16
11: Boundary 1.16/1.18
12: Boundary 1.18/1.19
13: Boundary 1.19/1.20
14: Boundary 1.20/1.22c
15: Boundary 1.22c/1.24c
16: Boundary 1.24c/1.25a
17: Boundary 1.25a/1.26
18: Boundary 1.26/1.27
19: Boundary 1.27/1.28
20: Boundary 1.28/1.29
21: Boundary 1.29/1.30
22: Boundary 1.30/1.31
23: Boundary 1.31/1.32
24: Boundary 1.32/1.33b
25: Boundary 1.33b/-
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1a
ENST00000265986
1a
ENSE00000810721
chr10:
94333833-94333679
155
IDE_HUMAN
1-33
33
0
-
-
1.7
ENST00000265986
7
ENSE00001007241
chr10:
94297307-94297123
185
IDE_HUMAN
33-95
63
2
A:42-95
B:44-95
54
52
1.8
ENST00000265986
8
ENSE00000810719
chr10:
94294542-94294335
208
IDE_HUMAN
95-164
70
2
A:95-164
B:95-164
70
70
1.9
ENST00000265986
9
ENSE00000810718
chr10:
94291674-94291505
170
IDE_HUMAN
164-221
58
2
A:164-221
B:164-221
58
58
1.10
ENST00000265986
10
ENSE00000810717
chr10:
94274799-94274677
123
IDE_HUMAN
221-262
42
2
A:221-262
B:221-262
42
42
1.11b
ENST00000265986
11b
ENSE00002200011
chr10:
94269919-94269807
113
IDE_HUMAN
262-299
38
2
A:262-299
B:262-299
38
38
1.12
ENST00000265986
12
ENSE00001792299
chr10:
94268647-94268485
163
IDE_HUMAN
300-354
55
2
A:300-354
B:300-354
55
55
1.13
ENST00000265986
13
ENSE00001679493
chr10:
94267962-94267870
93
IDE_HUMAN
354-385
32
2
A:354-385
B:354-385
32
32
1.14
ENST00000265986
14
ENSE00001644321
chr10:
94267423-94267332
92
IDE_HUMAN
385-415
31
2
A:385-415
B:385-415
31
31
1.15
ENST00000265986
15
ENSE00001604816
chr10:
94266279-94266199
81
IDE_HUMAN
416-442
27
2
A:416-442
B:416-442
27
27
1.16
ENST00000265986
16
ENSE00001667495
chr10:
94264654-94264551
104
IDE_HUMAN
443-477
35
2
A:443-477
B:443-477
35
35
1.18
ENST00000265986
18
ENSE00001648528
chr10:
94250352-94250250
103
IDE_HUMAN
477-511
35
2
A:477-511
B:477-511
35
35
1.19
ENST00000265986
19
ENSE00001617455
chr10:
94247075-94246953
123
IDE_HUMAN
512-552
41
2
A:512-552
B:512-552
41
41
1.20
ENST00000265986
20
ENSE00001749482
chr10:
94243094-94243012
83
IDE_HUMAN
553-580
28
2
A:553-580
B:553-580
28
28
1.22c
ENST00000265986
22c
ENSE00001616294
chr10:
94239178-94239034
145
IDE_HUMAN
580-628
49
2
A:580-628
B:580-628
49
49
1.24c
ENST00000265986
24c
ENSE00001756569
chr10:
94235751-94235641
111
IDE_HUMAN
629-665
37
2
A:629-665
B:629-665
37
37
1.25a
ENST00000265986
25a
ENSE00001597974
chr10:
94234718-94234598
121
IDE_HUMAN
666-706
41
2
A:666-706
B:666-706
41
41
1.26
ENST00000265986
26
ENSE00001744468
chr10:
94230102-94230011
92
IDE_HUMAN
706-736
31
2
A:706-736
B:706-736
31
31
1.27
ENST00000265986
27
ENSE00001745441
chr10:
94228747-94228636
112
IDE_HUMAN
737-774
38
2
A:737-774
B:737-774
38
38
1.28
ENST00000265986
28
ENSE00001711231
chr10:
94225600-94225433
168
IDE_HUMAN
774-830
57
2
A:774-830
B:774-830
57
57
1.29
ENST00000265986
29
ENSE00001669881
chr10:
94223760-94223488
273
IDE_HUMAN
830-921
92
2
A:830-921
B:830-921
92
92
1.30
ENST00000265986
30
ENSE00001634298
chr10:
94221009-94220948
62
IDE_HUMAN
921-941
21
2
A:921-941
B:921-941
21
21
1.31
ENST00000265986
31
ENSE00001762309
chr10:
94216188-94216116
73
IDE_HUMAN
942-966
25
2
A:942-963
B:942-965
22
24
1.32
ENST00000265986
32
ENSE00001734076
chr10:
94215400-94215333
68
IDE_HUMAN
966-988
23
2
A:979-988
B:979-988
10
10
1.33b
ENST00000265986
33b
ENSE00001893153
chr10:
94214296-94211441
2856
IDE_HUMAN
989-1019
31
2
A:989-1011
B:989-1011
23
23
[
close EXON info
]
SCOP Domains
(0, 0)
Info
All SCOP Domains
View:
Select:
Label:
Sorry, no Info available
[
close SCOP info
]
CATH Domains
(0, 0)
Info
all CATH domains
View:
Select:
Label:
Sorry, no Info available
[
close CATH info
]
Pfam Domains
(0, 0)
Info
all PFAM domains
View:
Select:
Label:
Sorry, no Info available
[
close Pfam info
]
Atom Selection
(currently selected atoms:
all
)
Protein
Nucleic
Backbone
Sidechain
Hetero
Ligand
Solvent
All Atoms
Protein & NOT Variant
Protein & NOT Site
Protein & NOT PROSITE
Chain A
Chain B
Asymmetric Unit 1
Rendering
(selected part)
Molecule Coloring
(selected part)
by Chain (Asym. Unit)
by Chain (Biol. Unit)
by Secondary Structure
by Atom (CPK)
by SCOP Domain
by CATH Domain
by Pfam Domain
by Asymmetric Unit
by Exon
by Amino Acid
by Nucleotide
by Temperature
by Charge
by Rainbow (Group)
by Custom Color
Background Coloring
Choose
molecule
background
color...
[
close
]
RGB value
(e.g.: "#3cb371" or "60,179,113")
Stereo
Graphics Window
x
pixel
Miscellaneous
Script
Example Commands
Example Command
Action
select :A, :C
select chains 'A' and 'C'
select [ALA]:A
select all 'ALA' residues (Alanines) in chain 'A'
select 5-10
select residue range 5 to 10 in all chains
select 5-10:A
select residue range 5 to 10 in chain 'A'
select protein & not helix & not sheet
select non-helix/non-sheet protein parts
set fontsize 20
set label size to 20 (allowed range: 1-58)
ssbonds 100
show SS bonds with a radius of 100 units (=0.4Å)
wireframe 100
show bonds with a radius of 100 units (=0.4Å)
[
close Script example commands
]
Log
Note:
In this "Basic Interface" any change in the selection of a pulldown menu automatically triggers an action (one-step mechanism).
View and selection are coupled in the structure specific controls (e.g. "Hetero","PROSITE") .
Note:
In this "Advanced Interface" any change in the selection of a pulldown menu only sets the target for the corresponding control buttons (two-step mechanism).
View and selection are set independently in the structure specific controls (e.g. "Hetero","PROSITE") .
QuickSearch:
by PDB,NDB,UniProt,PROSITE Code or
Search Term(s)
Show PDB file:
Asym.Unit (325 KB)
Header - Asym.Unit
Biol.Unit 1 (162 KB)
Header - Biol.Unit 1
Biol.Unit 2 (161 KB)
Header - Biol.Unit 2
Biol.Unit 3 (317 KB)
Header - Biol.Unit 3
Plain Text
HTML (compressed size)
use JSmol [Javascript]
use Jmol [Java applet]
Upload:
Select a local file
OR
Enter a remote file address
You can upload any molecular structure file format that is recognized by Jmol,
e.g.: PDB, mmCif, CIF, CML, MOL, XYZ
(also compressed with 'gzip', see the
Jmol documentation
for a complete list)
JenaLib Atlas Page
|
Sequence/Alignment View
4DWK
Jmol Script Commands
|
Jmol Color Schemes
|
Jmol Mouse Manual
|
Jmol Wiki
controls:
collapse
expand
Home
JenaLib
Jmol Scripting
Contact
Help
