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4DWH
Biol. Unit 1
Info
Asym.Unit (223 KB)
Biol.Unit 1 (109 KB)
Biol.Unit 2 (110 KB)
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(1)
Title
:
STRUCTURE OF THE MAJOR TYPE 1 PILUS SUBUNIT FIMA BOUND TO THE FIMC (2.5 A RESOLUTION)
Authors
:
M. A. Scharer, C. Puorger, M. Crespo, R. Glockshuber, G. Capitani
Date
:
24 Feb 12 (Deposition) - 30 May 12 (Release) - 17 Oct 12 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.50
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A,B (1x)
Biol. Unit 2: C,D (1x)
Keywords
:
Protein-Chaperone Complex, Immunoglobin-Like Fold, Involved In Type 1 Pilus Assembly, Structural Protein-Chaperone Complex
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
M. D. Crespo, C. Puorger, M. A. Scharer, O. Eidam, M. G. Grutter, G. Capitani, R. Glockshuber
Quality Control Of Disulfide Bond Formation In Pilus Subunits By The Chaperone Fimc.
Nat. Chem. Biol. V. 8 707 2012
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Hetero Components
(3, 10)
Info
All Hetero Components
1a: DI(HYDROXYETHYL)ETHER (PEGa)
1b: DI(HYDROXYETHYL)ETHER (PEGb)
1c: DI(HYDROXYETHYL)ETHER (PEGc)
1d: DI(HYDROXYETHYL)ETHER (PEGd)
1e: DI(HYDROXYETHYL)ETHER (PEGe)
1f: DI(HYDROXYETHYL)ETHER (PEGf)
1g: DI(HYDROXYETHYL)ETHER (PEGg)
1h: DI(HYDROXYETHYL)ETHER (PEGh)
1i: DI(HYDROXYETHYL)ETHER (PEGi)
1j: DI(HYDROXYETHYL)ETHER (PEGj)
2a: TETRAETHYLENE GLYCOL (PG4a)
2b: TETRAETHYLENE GLYCOL (PG4b)
3a: TRIETHYLENE GLYCOL (PGEa)
3b: TRIETHYLENE GLYCOL (PGEb)
4a: PHOSPHATE ION (PO4a)
4b: PHOSPHATE ION (PO4b)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
PEG
7
Ligand/Ion
DI(HYDROXYETHYL)ETHER
2
PG4
1
Ligand/Ion
TETRAETHYLENE GLYCOL
3
PGE
-1
Ligand/Ion
TRIETHYLENE GLYCOL
4
PO4
2
Ligand/Ion
PHOSPHATE ION
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Sites
(11, 11)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC3 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
PRO A:124 , LEU A:150 , ASN A:191 , ASP A:192 , HOH A:422 , HOH A:428
BINDING SITE FOR RESIDUE PEG A 301
02
AC2
SOFTWARE
LEU A:32 , ILE A:90 , SER A:92
BINDING SITE FOR RESIDUE PEG A 302
03
AC3
SOFTWARE
TRP A:36 , LYS A:44
BINDING SITE FOR RESIDUE PEG A 303
04
AC4
SOFTWARE
ARG A:79 , GLN B:44 , GLU B:45 , ALA B:47 , ARG B:106
BINDING SITE FOR RESIDUE PEG A 304
05
AC5
SOFTWARE
LYS A:119 , MET A:200 , THR A:201
BINDING SITE FOR RESIDUE PEG A 305
06
AC6
SOFTWARE
ASN A:73 , GLN A:77 , PG4 A:307 , GLN B:57
BINDING SITE FOR RESIDUE PEG A 306
07
AC7
SOFTWARE
ASN A:25 , ASP A:26 , PEG A:306 , ASN B:59
BINDING SITE FOR RESIDUE PG4 A 307
08
AC8
SOFTWARE
MET A:57 , LYS A:58 , LYS A:61 , LYS C:58
BINDING SITE FOR RESIDUE PO4 A 308
09
AC9
SOFTWARE
ILE A:190 , GLY A:194 , LEU A:196 , ASN B:18 , ASP B:62 , ASN B:64 , HOH B:314
BINDING SITE FOR RESIDUE PEG B 201
10
BC1
SOFTWARE
GLY A:5 , ALA A:6 , TYR A:193 , MET B:17 , ASN B:18
BINDING SITE FOR RESIDUE PO4 B 202
11
BC3
SOFTWARE
ASN A:24 , ASN C:24 , LYS C:60
BINDING SITE FOR RESIDUE PGE C 302
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SAPs(SNPs)/Variants
(2, 2)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
1: VAR_FIMC_ECOLI_002 (E18V, chain A, )
2: VAR_FIMC_ECOLI_003 (T174A, chain A, )
View:
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Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_FIMC_ECOLI_002
*
E
54
V
FIMC_ECOLI
---
---
A
E
18
V
2
UniProt
VAR_FIMC_ECOLI_003
*
T
210
A
FIMC_ECOLI
---
---
A
T
174
A
* ID not provided by source
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
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PROSITE Patterns/Profiles
(1, 1)
Info
All PROSITE Patterns/Profiles
1: PILI_CHAPERONE (A:75-92)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
PILI_CHAPERONE
PS00635
Gram-negative pili assembly chaperone signature.
FIMC_ECOLI
111-128
1
A:75-92
-
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Exons
(0, 0)
Info
All Exons
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(2, 4)
Info
All SCOP Domains
1a: SCOP_d4dwha2 (A:122-204)
1b: SCOP_d4dwhc2 (C:122-205)
2a: SCOP_d4dwha1 (A:1-121)
2b: SCOP_d4dwhc1 (C:1-121)
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Class
:
All beta proteins
(24004)
Fold
:
C2 domain-like
(198)
Superfamily
:
Periplasmic chaperone C-domain
(38)
Family
:
Periplasmic chaperone C-domain
(33)
Protein domain
:
FimC
(8)
Escherichia coli [TaxId: 562]
(8)
1a
d4dwha2
A:122-204
1b
d4dwhc2
C:122-205
Fold
:
Immunoglobulin-like beta-sandwich
(7299)
Superfamily
:
PapD-like
(47)
Family
:
Pilus chaperone
(36)
Protein domain
:
Periplasmic chaperone FimC
(8)
Escherichia coli [TaxId: 562]
(8)
2a
d4dwha1
A:1-121
2b
d4dwhc1
C:1-121
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CATH Domains
(0, 0)
Info
all CATH domains
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Pfam Domains
(0, 0)
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Asymmetric Unit 1
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Asym.Unit (223 KB)
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