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4DWF
Asym. Unit
Info
Asym.Unit (63 KB)
Biol.Unit 1 (30 KB)
Biol.Unit 2 (30 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF A HLA-B ASSOCIATED TRANSCRIPT 3 (BAT3) FROM HOMO SAPIENS AT 1.80 A RESOLUTION
Authors
:
Joint Center For Structural Genomics (Jcsg), Partnership For Biology (Tcell)
Date
:
24 Feb 12 (Deposition) - 28 Mar 12 (Release) - 21 Oct 15 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.80
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Keywords
:
Ubiquitin-Like Domain, Bat3 Protein, Pf00240, Structural Genomics, Joint Center For Structural Genomics, Jcsg, Protein Structure Initiative, Psi-Biology, Unknown Function
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
Joint Center For Structural Genomics (Jcsg), Partnership For T-Cell Biology (Tcell)
Crystal Structure Of A Hla-B Associated Transcript 3 (Bat3) From Homo Sapiens At 1. 80 A Resolution
To Be Published
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Hetero Components
(2, 6)
Info
All Hetero Components
1a: SELENOMETHIONINE (MSEa)
1b: SELENOMETHIONINE (MSEb)
2a: SULFATE ION (SO4a)
2b: SULFATE ION (SO4b)
2c: SULFATE ION (SO4c)
2d: SULFATE ION (SO4d)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
MSE
2
Mod. Amino Acid
SELENOMETHIONINE
2
SO4
4
Ligand/Ion
SULFATE ION
[
close Hetero Component info
]
Sites
(4, 4)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
ARG A:58 , ARG A:87 , HOH A:361 , HOH A:373
BINDING SITE FOR RESIDUE SO4 A 201
2
AC2
SOFTWARE
ARG A:64 , ARG B:29 , SER B:49 , SO4 B:202
BINDING SITE FOR RESIDUE SO4 A 202
3
AC3
SOFTWARE
ARG B:58 , ARG B:87 , PRO B:90 , HOH B:372 , HOH B:374
BINDING SITE FOR RESIDUE SO4 B 201
4
AC4
SOFTWARE
GLY A:0 , SO4 A:202 , GLN B:27 , ARG B:29 , HOH B:305 , HOH B:326
BINDING SITE FOR RESIDUE SO4 B 202
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
View:
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Label:
Sorry, no Info available
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PROSITE Patterns/Profiles
(2, 4)
Info
All PROSITE Patterns/Profiles
1: UBIQUITIN_2 (A:17-77,B:17-77)
2: UBIQUITIN_1 (A:43-68,B:43-68)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
UBIQUITIN_2
PS50053
Ubiquitin domain profile.
BAG6_HUMAN
17-77
2
A:17-77
B:17-77
2
UBIQUITIN_1
PS00299
Ubiquitin domain signature.
BAG6_HUMAN
43-68
2
A:43-68
B:43-68
[
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Exons
(3, 6)
Info
All Exons
Exon 1.49g (A:0-36 | B:0-36)
Exon 1.50 (A:37-76 | B:37-76)
Exon 1.51c (A:76-90 | B:76-90)
View:
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All Exon Boundaries
1: Boundary 1.47h/1.49g
2: Boundary 1.49g/1.50
3: Boundary 1.50/1.51c
4: Boundary 1.51c/1.52b
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.47h
ENST00000375964
47h
ENSE00001951039
chr6:
31620412-31620177
236
BAG6_HUMAN
-
0
0
-
-
1.49g
ENST00000375964
49g
ENSE00002174690
chr6:
31619553-31619433
121
BAG6_HUMAN
1-36
36
2
A:0-36
B:0-36
25
25
1.50
ENST00000375964
50
ENSE00001597633
chr6:
31617404-31617287
118
BAG6_HUMAN
37-76
40
2
A:37-76
B:37-76
40
40
1.51c
ENST00000375964
51c
ENSE00001647755
chr6:
31617172-31616976
197
BAG6_HUMAN
76-141
66
2
A:76-90
B:76-90
15
15
1.52b
ENST00000375964
52b
ENSE00001607282
chr6:
31616741-31616688
54
BAG6_HUMAN
142-159
18
0
-
-
1.53b
ENST00000375964
53b
ENSE00001712948
chr6:
31616528-31616454
75
BAG6_HUMAN
160-184
25
0
-
-
1.54b
ENST00000375964
54b
ENSE00001652529
chr6:
31615621-31615368
254
BAG6_HUMAN
185-269
85
0
-
-
1.55
ENST00000375964
55
ENSE00001783146
chr6:
31614300-31614171
130
BAG6_HUMAN
269-312
44
0
-
-
1.56a
ENST00000375964
56a
ENSE00001675200
chr6:
31613381-31613184
198
BAG6_HUMAN
313-378
66
0
-
-
1.57b
ENST00000375964
57b
ENSE00001693380
chr6:
31612975-31612723
253
BAG6_HUMAN
379-463
85
0
-
-
1.58b
ENST00000375964
58b
ENSE00001752679
chr6:
31612379-31612302
78
BAG6_HUMAN
463-489
27
0
-
-
1.59e
ENST00000375964
59e
ENSE00001608098
chr6:
31611971-31611859
113
BAG6_HUMAN
489-526
38
0
-
-
1.60a
ENST00000375964
60a
ENSE00002195417
chr6:
31611754-31611667
88
BAG6_HUMAN
527-556
30
0
-
-
1.61f
ENST00000375964
61f
ENSE00002200738
chr6:
31610892-31610606
287
BAG6_HUMAN
556-651
96
0
-
-
1.61ae
ENST00000375964
61ae
ENSE00001603864
chr6:
31610180-31609889
292
BAG6_HUMAN
652-749
98
0
-
-
1.61ay
ENST00000375964
61ay
ENSE00001772243
chr6:
31609722-31609553
170
BAG6_HUMAN
749-805
57
0
-
-
1.62a
ENST00000375964
62a
ENSE00001750274
chr6:
31609369-31609316
54
BAG6_HUMAN
806-823
18
0
-
-
1.62c
ENST00000375964
62c
ENSE00001777969
chr6:
31609199-31609097
103
BAG6_HUMAN
824-858
35
0
-
-
1.62d
ENST00000375964
62d
ENSE00001714239
chr6:
31609005-31608881
125
BAG6_HUMAN
858-899
42
0
-
-
1.62e
ENST00000375964
62e
ENSE00001642258
chr6:
31608715-31608569
147
BAG6_HUMAN
900-948
49
0
-
-
1.63
ENST00000375964
63
ENSE00001652658
chr6:
31608481-31608422
60
BAG6_HUMAN
949-968
20
0
-
-
1.64b
ENST00000375964
64b
ENSE00001781316
chr6:
31608305-31608162
144
BAG6_HUMAN
969-1016
48
0
-
-
1.65
ENST00000375964
65
ENSE00001608526
chr6:
31608083-31607976
108
BAG6_HUMAN
1017-1052
36
0
-
-
1.66s
ENST00000375964
66s
ENSE00001633257
chr6:
31607423-31607277
147
BAG6_HUMAN
1053-1101
49
0
-
-
1.66af
ENST00000375964
66af
ENSE00001723218
chr6:
31607003-31606805
199
BAG6_HUMAN
1102-1132
31
0
-
-
[
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SCOP Domains
(1, 2)
Info
All SCOP Domains
1a: SCOP_d4dwfa_ (A:)
1b: SCOP_d4dwfb_ (B:)
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)
Protein Domains
(
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(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
beta-Grasp (ubiquitin-like)
(1032)
Superfamily
:
Ubiquitin-like
(546)
Family
:
Ubiquitin-related
(337)
Protein domain
:
automated matches
(80)
Human (Homo sapiens) [TaxId: 9606]
(62)
1a
d4dwfa_
A:
1b
d4dwfb_
B:
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CATH Domains
(0, 0)
Info
all CATH domains
View:
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Sorry, no Info available
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Pfam Domains
(0, 0)
Info
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Sorry, no Info available
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