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4DWC
Biol. Unit 2
Info
Asym.Unit (72 KB)
Biol.Unit 1 (34 KB)
Biol.Unit 2 (34 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF THE GLYCOPROTEIN ERNS FROM THE PESTIVIRUS BVDV-1 IN COMPLEX WITH ZN IONS
Authors
:
T. Krey, F. Bontems, C. Vonrhein, M. -C. Vaney, G. Bricogne, T. Ruemenap
Date
:
24 Feb 12 (Deposition) - 23 May 12 (Release) - 23 May 12 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.89
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Keywords
:
Virus Glycoprotein, T2 Ribonuclease, Viral Protein
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
T. Krey, F. Bontems, C. Vonrhein, M. C. Vaney, G. Bricogne, T. Rumenapf F. A. Rey
Crystal Structure Of The Pestivirus Envelope Glycoprotein E(Rns) And Mechanistic Analysis Of Its Ribonuclease Activity.
Structure V. 20 862 2012
[
close entry info
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Hetero Components
(5, 20)
Info
All Hetero Components
1a: BETA-D-MANNOSE (BMAa)
1b: BETA-D-MANNOSE (BMAb)
1c: BETA-D-MANNOSE (BMAc)
1d: BETA-D-MANNOSE (BMAd)
1e: BETA-D-MANNOSE (BMAe)
1f: BETA-D-MANNOSE (BMAf)
2a: ALPHA-D-FUCOSE (FCAa)
3a: ALPHA-D-MANNOSE (MANa)
3b: ALPHA-D-MANNOSE (MANb)
3c: ALPHA-D-MANNOSE (MANc)
3d: ALPHA-D-MANNOSE (MANd)
4a: N-ACETYL-D-GLUCOSAMINE (NAGa)
4b: N-ACETYL-D-GLUCOSAMINE (NAGb)
4c: N-ACETYL-D-GLUCOSAMINE (NAGc)
4d: N-ACETYL-D-GLUCOSAMINE (NAGd)
4e: N-ACETYL-D-GLUCOSAMINE (NAGe)
4f: N-ACETYL-D-GLUCOSAMINE (NAGf)
4g: N-ACETYL-D-GLUCOSAMINE (NAGg)
4h: N-ACETYL-D-GLUCOSAMINE (NAGh)
4i: N-ACETYL-D-GLUCOSAMINE (NAGi)
4j: N-ACETYL-D-GLUCOSAMINE (NAGj)
4k: N-ACETYL-D-GLUCOSAMINE (NAGk)
4l: N-ACETYL-D-GLUCOSAMINE (NAGl)
4m: N-ACETYL-D-GLUCOSAMINE (NAGm)
4n: N-ACETYL-D-GLUCOSAMINE (NAGn)
4o: N-ACETYL-D-GLUCOSAMINE (NAGo)
4p: N-ACETYL-D-GLUCOSAMINE (NAGp)
4q: N-ACETYL-D-GLUCOSAMINE (NAGq)
4r: N-ACETYL-D-GLUCOSAMINE (NAGr)
5a: SULFATE ION (SO4a)
5b: SULFATE ION (SO4b)
5c: SULFATE ION (SO4c)
5d: SULFATE ION (SO4d)
5e: SULFATE ION (SO4e)
5f: SULFATE ION (SO4f)
5g: SULFATE ION (SO4g)
6a: ZINC ION (ZNa)
6b: ZINC ION (ZNb)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
BMA
3
Ligand/Ion
BETA-D-MANNOSE
2
FCA
1
Ligand/Ion
ALPHA-D-FUCOSE
3
MAN
2
Ligand/Ion
ALPHA-D-MANNOSE
4
NAG
10
Ligand/Ion
N-ACETYL-D-GLUCOSAMINE
5
SO4
4
Ligand/Ion
SULFATE ION
6
ZN
-1
Ligand/Ion
ZINC ION
[
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Sites
(22, 22)
Info
All Sites
01: AC6 (SOFTWARE)
02: BC1 (SOFTWARE)
03: CC1 (SOFTWARE)
04: CC2 (SOFTWARE)
05: CC3 (SOFTWARE)
06: CC4 (SOFTWARE)
07: CC5 (SOFTWARE)
08: CC6 (SOFTWARE)
09: CC7 (SOFTWARE)
10: CC8 (SOFTWARE)
11: CC9 (SOFTWARE)
12: DC1 (SOFTWARE)
13: DC2 (SOFTWARE)
14: DC3 (SOFTWARE)
15: DC4 (SOFTWARE)
16: DC5 (SOFTWARE)
17: DC6 (SOFTWARE)
18: DC7 (SOFTWARE)
19: DC8 (SOFTWARE)
20: DC9 (SOFTWARE)
21: EC1 (SOFTWARE)
22: EC2 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC6
SOFTWARE
BMA A:1105 , HIS B:57
BINDING SITE FOR RESIDUE MAN A 1106
02
BC1
SOFTWARE
ALA A:55 , LEU A:94 , ASN A:97 , NAG A:1111 , GLU B:90 , LEU B:94
BINDING SITE FOR RESIDUE NAG A 1110
03
CC1
SOFTWARE
GLU B:3 , ASN B:4 , PRO B:36 , ASN B:85 , TRP B:86 , NAG B:1102
BINDING SITE FOR RESIDUE NAG B 1101
04
CC2
SOFTWARE
ASN B:85 , TRP B:86 , TYR B:87 , PRO B:91 , NAG B:1101 , BMA B:1103 , MAN B:1104 , BMA B:1107
BINDING SITE FOR RESIDUE NAG B 1102
05
CC3
SOFTWARE
TRP B:86 , ASN B:88 , NAG B:1102 , MAN B:1104 , BMA B:1105
BINDING SITE FOR RESIDUE BMA B 1103
06
CC4
SOFTWARE
TYR B:87 , NAG B:1102 , BMA B:1103 , BMA B:1107
BINDING SITE FOR RESIDUE MAN B 1104
07
CC5
SOFTWARE
ASN B:88 , GLU B:90 , PRO B:91 , BMA B:1103 , MAN B:1106 , HOH B:1204
BINDING SITE FOR RESIDUE BMA B 1105
08
CC6
SOFTWARE
HIS A:57 , BMA B:1105
BINDING SITE FOR RESIDUE MAN B 1106
09
CC7
SOFTWARE
NAG B:1102 , MAN B:1104
BINDING SITE FOR RESIDUE BMA B 1107
10
CC8
SOFTWARE
GLY B:26 , ASN B:28 , ALA B:149 , ILE B:151
BINDING SITE FOR RESIDUE NAG B 1108
11
CC9
SOFTWARE
ASN B:67 , NAG B:1110 , FCA B:1111
BINDING SITE FOR RESIDUE NAG B 1109
12
DC1
SOFTWARE
GLN B:24 , NAG B:1109
BINDING SITE FOR RESIDUE NAG B 1110
13
DC2
SOFTWARE
ARG B:25 , NAG B:1109
BINDING SITE FOR RESIDUE FCA B 1111
14
DC3
SOFTWARE
GLU A:90 , LEU A:94 , LEU B:94 , ASN B:97 , NAG B:1113
BINDING SITE FOR RESIDUE NAG B 1112
15
DC4
SOFTWARE
NAG B:1112
BINDING SITE FOR RESIDUE NAG B 1113
16
DC5
SOFTWARE
LYS B:98 , ASN B:102 , NAG B:1115
BINDING SITE FOR RESIDUE NAG B 1114
17
DC6
SOFTWARE
NAG B:1114
BINDING SITE FOR RESIDUE NAG B 1115
18
DC7
SOFTWARE
ASN B:13 , ARG B:20 , PHE B:23
BINDING SITE FOR RESIDUE NAG B 1116
19
DC8
SOFTWARE
HIS B:32 , TRP B:35 , HIS B:76 , GLU B:77 , LYS B:80 , HIS B:81
BINDING SITE FOR RESIDUE SO4 B 1117
20
DC9
SOFTWARE
ARG B:72 , HIS B:76 , ASN B:79
BINDING SITE FOR RESIDUE SO4 B 1118
21
EC1
SOFTWARE
HIS B:76 , LYS B:80
BINDING SITE FOR RESIDUE SO4 B 1119
22
EC2
SOFTWARE
ARG B:72 , ARG B:75
BINDING SITE FOR RESIDUE SO4 B 1120
[
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]
SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
View:
Select:
Label:
Sorry, no Info available
[
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PROSITE Patterns/Profiles
(1, 1)
Info
All PROSITE Patterns/Profiles
1: RNASE_T2_2 (B:73-84)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
RNASE_T2_2
PS00531
Ribonuclease T2 family histidine active site 2.
POLG_BVDVC
341-352
1
-
B:73-84
[
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Exons
(0, 0)
Info
All Exons
View:
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All Exon Boundaries
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(0, 0)
Info
All SCOP Domains
View:
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Label:
Sorry, no Info available
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CATH Domains
(0, 0)
Info
all CATH domains
View:
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Label:
Sorry, no Info available
[
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Pfam Domains
(0, 0)
Info
all PFAM domains
View:
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Label:
Sorry, no Info available
[
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]
Atom Selection
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Protein
Nucleic
Backbone
Sidechain
Hetero
Ligand
Solvent
All Atoms
Protein & NOT Variant
Protein & NOT Site
Protein & NOT PROSITE
Chain B
Asymmetric Unit 1
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select chains 'A' and 'C'
select [ALA]:A
select all 'ALA' residues (Alanines) in chain 'A'
select 5-10
select residue range 5 to 10 in all chains
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select residue range 5 to 10 in chain 'A'
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select non-helix/non-sheet protein parts
set fontsize 20
set label size to 20 (allowed range: 1-58)
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show SS bonds with a radius of 100 units (=0.4Å)
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show bonds with a radius of 100 units (=0.4Å)
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Show PDB file:
Asym.Unit (72 KB)
Header - Asym.Unit
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Header - Biol.Unit 1
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Header - Biol.Unit 2
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