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4DWC
Biol. Unit 1
Info
Asym.Unit (72 KB)
Biol.Unit 1 (34 KB)
Biol.Unit 2 (34 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF THE GLYCOPROTEIN ERNS FROM THE PESTIVIRUS BVDV-1 IN COMPLEX WITH ZN IONS
Authors
:
T. Krey, F. Bontems, C. Vonrhein, M. -C. Vaney, G. Bricogne, T. Ruemenap
Date
:
24 Feb 12 (Deposition) - 23 May 12 (Release) - 23 May 12 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.89
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Keywords
:
Virus Glycoprotein, T2 Ribonuclease, Viral Protein
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
T. Krey, F. Bontems, C. Vonrhein, M. C. Vaney, G. Bricogne, T. Rumenapf F. A. Rey
Crystal Structure Of The Pestivirus Envelope Glycoprotein E(Rns) And Mechanistic Analysis Of Its Ribonuclease Activity.
Structure V. 20 862 2012
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Hetero Components
(4, 16)
Info
All Hetero Components
1a: BETA-D-MANNOSE (BMAa)
1b: BETA-D-MANNOSE (BMAb)
1c: BETA-D-MANNOSE (BMAc)
1d: BETA-D-MANNOSE (BMAd)
1e: BETA-D-MANNOSE (BMAe)
1f: BETA-D-MANNOSE (BMAf)
2a: ALPHA-D-FUCOSE (FCAa)
3a: ALPHA-D-MANNOSE (MANa)
3b: ALPHA-D-MANNOSE (MANb)
3c: ALPHA-D-MANNOSE (MANc)
3d: ALPHA-D-MANNOSE (MANd)
4a: N-ACETYL-D-GLUCOSAMINE (NAGa)
4b: N-ACETYL-D-GLUCOSAMINE (NAGb)
4c: N-ACETYL-D-GLUCOSAMINE (NAGc)
4d: N-ACETYL-D-GLUCOSAMINE (NAGd)
4e: N-ACETYL-D-GLUCOSAMINE (NAGe)
4f: N-ACETYL-D-GLUCOSAMINE (NAGf)
4g: N-ACETYL-D-GLUCOSAMINE (NAGg)
4h: N-ACETYL-D-GLUCOSAMINE (NAGh)
4i: N-ACETYL-D-GLUCOSAMINE (NAGi)
4j: N-ACETYL-D-GLUCOSAMINE (NAGj)
4k: N-ACETYL-D-GLUCOSAMINE (NAGk)
4l: N-ACETYL-D-GLUCOSAMINE (NAGl)
4m: N-ACETYL-D-GLUCOSAMINE (NAGm)
4n: N-ACETYL-D-GLUCOSAMINE (NAGn)
4o: N-ACETYL-D-GLUCOSAMINE (NAGo)
4p: N-ACETYL-D-GLUCOSAMINE (NAGp)
4q: N-ACETYL-D-GLUCOSAMINE (NAGq)
4r: N-ACETYL-D-GLUCOSAMINE (NAGr)
5a: SULFATE ION (SO4a)
5b: SULFATE ION (SO4b)
5c: SULFATE ION (SO4c)
5d: SULFATE ION (SO4d)
5e: SULFATE ION (SO4e)
5f: SULFATE ION (SO4f)
5g: SULFATE ION (SO4g)
6a: ZINC ION (ZNa)
6b: ZINC ION (ZNb)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
BMA
3
Ligand/Ion
BETA-D-MANNOSE
2
FCA
-1
Ligand/Ion
ALPHA-D-FUCOSE
3
MAN
2
Ligand/Ion
ALPHA-D-MANNOSE
4
NAG
8
Ligand/Ion
N-ACETYL-D-GLUCOSAMINE
5
SO4
3
Ligand/Ion
SULFATE ION
6
ZN
-1
Ligand/Ion
ZINC ION
[
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Sites
(20, 20)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
19: CC6 (SOFTWARE)
20: DC3 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
ASN A:4 , PRO A:36 , ASN A:85 , TRP A:86 , NAG A:1102 , HOH A:1223
BINDING SITE FOR RESIDUE NAG A 1101
02
AC2
SOFTWARE
ASN A:85 , TRP A:86 , TYR A:87 , PRO A:91 , NAG A:1101 , BMA A:1103 , MAN A:1104 , BMA A:1107
BINDING SITE FOR RESIDUE NAG A 1102
03
AC3
SOFTWARE
TRP A:86 , ASN A:88 , NAG A:1102 , MAN A:1104 , BMA A:1105
BINDING SITE FOR RESIDUE BMA A 1103
04
AC4
SOFTWARE
TYR A:87 , NAG A:1102 , BMA A:1103 , BMA A:1107 , HOH A:1206
BINDING SITE FOR RESIDUE MAN A 1104
05
AC5
SOFTWARE
ASN A:88 , PRO A:91 , BMA A:1103 , MAN A:1106
BINDING SITE FOR RESIDUE BMA A 1105
06
AC6
SOFTWARE
BMA A:1105 , HIS B:57
BINDING SITE FOR RESIDUE MAN A 1106
07
AC7
SOFTWARE
NAG A:1102 , MAN A:1104
BINDING SITE FOR RESIDUE BMA A 1107
08
AC8
SOFTWARE
GLY A:26 , ASN A:28 , ALA A:149 , ILE A:151 , NAG A:1109
BINDING SITE FOR RESIDUE NAG A 1108
09
AC9
SOFTWARE
NAG A:1108
BINDING SITE FOR RESIDUE NAG A 1109
10
BC1
SOFTWARE
ALA A:55 , LEU A:94 , ASN A:97 , NAG A:1111 , GLU B:90 , LEU B:94
BINDING SITE FOR RESIDUE NAG A 1110
11
BC2
SOFTWARE
NAG A:1110
BINDING SITE FOR RESIDUE NAG A 1111
12
BC3
SOFTWARE
LYS A:98 , THR A:99 , ASN A:102 , HOH A:1203
BINDING SITE FOR RESIDUE NAG A 1112
13
BC4
SOFTWARE
ASN A:13 , ARG A:20
BINDING SITE FOR RESIDUE NAG A 1113
14
BC5
SOFTWARE
HIS A:76 , LYS A:80 , HIS A:81 , SO4 A:1118
BINDING SITE FOR RESIDUE ZN A 1114
15
BC6
SOFTWARE
GLU A:37
BINDING SITE FOR RESIDUE ZN A 1115
16
BC7
SOFTWARE
HIS A:76 , ASN A:79 , HOH A:1210
BINDING SITE FOR RESIDUE SO4 A 1116
17
BC8
SOFTWARE
SER A:63 , LYS A:65 , ARG A:72
BINDING SITE FOR RESIDUE SO4 A 1117
18
BC9
SOFTWARE
HIS A:32 , TRP A:35 , HIS A:76 , GLU A:77 , LYS A:80 , HIS A:81 , ZN A:1114 , HOH A:1222
BINDING SITE FOR RESIDUE SO4 A 1118
19
CC6
SOFTWARE
HIS A:57 , BMA B:1105
BINDING SITE FOR RESIDUE MAN B 1106
20
DC3
SOFTWARE
GLU A:90 , LEU A:94 , LEU B:94 , ASN B:97 , NAG B:1113
BINDING SITE FOR RESIDUE NAG B 1112
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
View:
Select:
Label:
Sorry, no Info available
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PROSITE Patterns/Profiles
(1, 1)
Info
All PROSITE Patterns/Profiles
1: RNASE_T2_2 (A:73-84)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
RNASE_T2_2
PS00531
Ribonuclease T2 family histidine active site 2.
POLG_BVDVC
341-352
1
A:73-84
-
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Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(0, 0)
Info
All SCOP Domains
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Sorry, no Info available
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CATH Domains
(0, 0)
Info
all CATH domains
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Sorry, no Info available
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Pfam Domains
(0, 0)
Info
all PFAM domains
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Sorry, no Info available
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Atom Selection
(currently selected atoms:
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Protein
Nucleic
Backbone
Sidechain
Hetero
Ligand
Solvent
All Atoms
Protein & NOT Variant
Protein & NOT Site
Protein & NOT PROSITE
Chain A
Asymmetric Unit 1
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select :A, :C
select chains 'A' and 'C'
select [ALA]:A
select all 'ALA' residues (Alanines) in chain 'A'
select 5-10
select residue range 5 to 10 in all chains
select 5-10:A
select residue range 5 to 10 in chain 'A'
select protein & not helix & not sheet
select non-helix/non-sheet protein parts
set fontsize 20
set label size to 20 (allowed range: 1-58)
ssbonds 100
show SS bonds with a radius of 100 units (=0.4Å)
wireframe 100
show bonds with a radius of 100 units (=0.4Å)
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Asym.Unit (72 KB)
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Biol.Unit 1 (34 KB)
Header - Biol.Unit 1
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