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4DWA
Biol. Unit 2
Info
Asym.Unit (69 KB)
Biol.Unit 1 (33 KB)
Biol.Unit 2 (32 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF AN ACTIVE-SITE MUTANT OF THE GLYCOPROTEIN ERNS FROM THE PESTIVIRUS BVDV-1 IN COMPLEX WITH A CPUPC TRINUCLEOTIDE
Authors
:
T. Krey, F. Bontems, C. Vonrhein, M. -C. Vaney, G. Bricogne, T. Ruemenap
Date
:
24 Feb 12 (Deposition) - 23 May 12 (Release) - 23 May 12 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
3.01
Chains
:
Asym. Unit : A,B,D
Biol. Unit 1: A,D (1x)
Biol. Unit 2: B (1x)
Keywords
:
Virus Glycoprotein, T2 Ribonuclease, Viral Protein-Rna Complex
(Keyword Search:
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Gene Ontology, PubMed, Web (Google)
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)
Reference
:
T. Krey, F. Bontems, C. Vonrhein, M. C. Vaney, G. Bricogne, T. Rumenapf F. A. Rey
Crystal Structure Of The Pestivirus Envelope Glycoprotein E(Rns) And Mechanistic Analysis Of Its Ribonuclease Activity.
Structure V. 20 862 2012
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Hetero Components
(4, 12)
Info
All Hetero Components
1a: BETA-D-MANNOSE (BMAa)
1b: BETA-D-MANNOSE (BMAb)
1c: BETA-D-MANNOSE (BMAc)
1d: BETA-D-MANNOSE (BMAd)
1e: BETA-D-MANNOSE (BMAe)
1f: BETA-D-MANNOSE (BMAf)
2a: ALPHA-D-MANNOSE (MANa)
3a: N-ACETYL-D-GLUCOSAMINE (NAGa)
3b: N-ACETYL-D-GLUCOSAMINE (NAGb)
3c: N-ACETYL-D-GLUCOSAMINE (NAGc)
3d: N-ACETYL-D-GLUCOSAMINE (NAGd)
3e: N-ACETYL-D-GLUCOSAMINE (NAGe)
3f: N-ACETYL-D-GLUCOSAMINE (NAGf)
3g: N-ACETYL-D-GLUCOSAMINE (NAGg)
3h: N-ACETYL-D-GLUCOSAMINE (NAGh)
3i: N-ACETYL-D-GLUCOSAMINE (NAGi)
3j: N-ACETYL-D-GLUCOSAMINE (NAGj)
3k: N-ACETYL-D-GLUCOSAMINE (NAGk)
3l: N-ACETYL-D-GLUCOSAMINE (NAGl)
3m: N-ACETYL-D-GLUCOSAMINE (NAGm)
3n: N-ACETYL-D-GLUCOSAMINE (NAGn)
4a: SULFATE ION (SO4a)
4b: SULFATE ION (SO4b)
4c: SULFATE ION (SO4c)
4d: SULFATE ION (SO4d)
4e: SULFATE ION (SO4e)
4f: SULFATE ION (SO4f)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
BMA
3
Ligand/Ion
BETA-D-MANNOSE
2
MAN
1
Ligand/Ion
ALPHA-D-MANNOSE
3
NAG
6
Ligand/Ion
N-ACETYL-D-GLUCOSAMINE
4
SO4
2
Ligand/Ion
SULFATE ION
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Sites
(15, 15)
Info
All Sites
01: AC5 (SOFTWARE)
02: AC7 (SOFTWARE)
03: AC8 (SOFTWARE)
04: BC7 (SOFTWARE)
05: BC8 (SOFTWARE)
06: BC9 (SOFTWARE)
07: CC1 (SOFTWARE)
08: CC2 (SOFTWARE)
09: CC3 (SOFTWARE)
10: CC4 (SOFTWARE)
11: CC5 (SOFTWARE)
12: CC6 (SOFTWARE)
13: CC7 (SOFTWARE)
14: CC8 (SOFTWARE)
15: CC9 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC5
SOFTWARE
BMA A:1104 , HIS B:57
BINDING SITE FOR RESIDUE BMA A 1105
02
AC7
SOFTWARE
LEU A:94 , ASN A:97 , ALA A:101 , NAG A:1108 , GLU B:90 , LEU B:94
BINDING SITE FOR RESIDUE NAG A 1107
03
AC8
SOFTWARE
NAG A:1107 , PRO B:91 , BMA B:1105
BINDING SITE FOR RESIDUE NAG A 1108
04
BC7
SOFTWARE
ASN B:4 , PRO B:36 , ASN B:85 , TRP B:86 , NAG B:1102
BINDING SITE FOR RESIDUE NAG B 1101
05
BC8
SOFTWARE
ASN B:85 , TRP B:86 , TYR B:87 , PRO B:91 , NAG B:1101 , BMA B:1103 , MAN B:1104
BINDING SITE FOR RESIDUE NAG B 1102
06
BC9
SOFTWARE
TRP B:86 , ASN B:88 , NAG B:1102 , MAN B:1104 , BMA B:1105
BINDING SITE FOR RESIDUE BMA B 1103
07
CC1
SOFTWARE
TYR B:87 , NAG B:1102 , BMA B:1103 , HOH B:1229
BINDING SITE FOR RESIDUE MAN B 1104
08
CC2
SOFTWARE
NAG A:1108 , ASN B:88 , PRO B:91 , BMA B:1103 , BMA B:1106
BINDING SITE FOR RESIDUE BMA B 1105
09
CC3
SOFTWARE
HIS A:57 , BMA B:1105 , HOH B:1211
BINDING SITE FOR RESIDUE BMA B 1106
10
CC4
SOFTWARE
GLU A:90 , LEU A:94 , ALA B:55 , LEU B:94 , ASN B:97 , ALA B:101 , NAG B:1108
BINDING SITE FOR RESIDUE NAG B 1107
11
CC5
SOFTWARE
NAG B:1107
BINDING SITE FOR RESIDUE NAG B 1108
12
CC6
SOFTWARE
LEU B:95 , THR B:99 , ASN B:102
BINDING SITE FOR RESIDUE NAG B 1109
13
CC7
SOFTWARE
ASN B:13 , ARG B:20 , HOH B:1225 , HOH B:1227
BINDING SITE FOR RESIDUE NAG B 1110
14
CC8
SOFTWARE
LYS B:32 , HIS B:76 , GLU B:77 , LYS B:80 , HIS B:81 , HOH B:1213
BINDING SITE FOR RESIDUE SO4 B 1111
15
CC9
SOFTWARE
HIS B:76 , ASN B:79
BINDING SITE FOR RESIDUE SO4 B 1112
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
View:
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Sorry, no Info available
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PROSITE Patterns/Profiles
(1, 1)
Info
All PROSITE Patterns/Profiles
1: RNASE_T2_2 (B:73-84)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
RNASE_T2_2
PS00531
Ribonuclease T2 family histidine active site 2.
POLG_BVDVC
341-352
1
-
B:73-84
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Exons
(0, 0)
Info
All Exons
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
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SCOP Domains
(0, 0)
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Sorry, no Info available
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CATH Domains
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Pfam Domains
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Protein & NOT Variant
Protein & NOT Site
Protein & NOT PROSITE
Chain B
Asymmetric Unit 1
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Asym.Unit (69 KB)
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Header - Biol.Unit 2
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