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4DW7
Biol. Unit 2
Info
Asym.Unit (69 KB)
Biol.Unit 1 (32 KB)
Biol.Unit 2 (32 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF AN ACTIVE-SITE MUTANT OF THE GLYCOPROTEIN ERNS FROM THE PESTIVIRUS BVDV-1 IN COMPLEX WITH A CPU DINUCLEOTIDE
Authors
:
T. Krey, F. Bontems, C. Vonrhein, M. -C. Vaney, G. Bricogne, T. Ruemenap
Date
:
24 Feb 12 (Deposition) - 23 May 12 (Release) - 23 May 12 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
3.08
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Keywords
:
Virus Glycoprotein, T2 Ribonuclease, Viral Protein
(Keyword Search:
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Gene Ontology, PubMed, Web (Google)
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Reference
:
T. Krey, F. Bontems, C. Vonrhein, M. C. Vaney, G. Bricogne, T. Rumenapf F. A. Rey
Crystal Structure Of The Pestivirus Envelope Glycoprotein E(Rns) And Mechanistic Analysis Of Its Ribonuclease Activity.
Structure V. 20 862 2012
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Hetero Components
(4, 13)
Info
All Hetero Components
1a: BETA-D-MANNOSE (BMAa)
1b: BETA-D-MANNOSE (BMAb)
1c: BETA-D-MANNOSE (BMAc)
1d: BETA-D-MANNOSE (BMAd)
1e: BETA-D-MANNOSE (BMAe)
1f: BETA-D-MANNOSE (BMAf)
2a: CYTIDINE-5'-MONOPHOSPHATE (Ca)
2b: CYTIDINE-5'-MONOPHOSPHATE (Cb)
3a: ALPHA-D-MANNOSE (MANa)
3b: ALPHA-D-MANNOSE (MANb)
4a: N-ACETYL-D-GLUCOSAMINE (NAGa)
4b: N-ACETYL-D-GLUCOSAMINE (NAGb)
4c: N-ACETYL-D-GLUCOSAMINE (NAGc)
4d: N-ACETYL-D-GLUCOSAMINE (NAGd)
4e: N-ACETYL-D-GLUCOSAMINE (NAGe)
4f: N-ACETYL-D-GLUCOSAMINE (NAGf)
4g: N-ACETYL-D-GLUCOSAMINE (NAGg)
4h: N-ACETYL-D-GLUCOSAMINE (NAGh)
4i: N-ACETYL-D-GLUCOSAMINE (NAGi)
4j: N-ACETYL-D-GLUCOSAMINE (NAGj)
4k: N-ACETYL-D-GLUCOSAMINE (NAGk)
4l: N-ACETYL-D-GLUCOSAMINE (NAGl)
5a: SULFATE ION (SO4a)
5b: SULFATE ION (SO4b)
5c: SULFATE ION (SO4c)
5d: SULFATE ION (SO4d)
5e: SULFATE ION (SO4e)
6a: URIDINE-5'-MONOPHOSPHATE (Ua)
6b: URIDINE-5'-MONOPHOSPHATE (Ub)
View:
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Label:
No.
Name
Count
Type
Full Name
1
BMA
3
Ligand/Ion
BETA-D-MANNOSE
2
C
-1
Ligand/Ion
CYTIDINE-5'-MONOPHOSPHATE
3
MAN
2
Ligand/Ion
ALPHA-D-MANNOSE
4
NAG
6
Ligand/Ion
N-ACETYL-D-GLUCOSAMINE
5
SO4
2
Ligand/Ion
SULFATE ION
6
U
-1
Ligand/Ion
URIDINE-5'-MONOPHOSPHATE
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Sites
(17, 17)
Info
All Sites
01: AC5 (SOFTWARE)
02: AC7 (SOFTWARE)
03: BC6 (SOFTWARE)
04: BC7 (SOFTWARE)
05: BC8 (SOFTWARE)
06: BC9 (SOFTWARE)
07: CC1 (SOFTWARE)
08: CC2 (SOFTWARE)
09: CC3 (SOFTWARE)
10: CC4 (SOFTWARE)
11: CC5 (SOFTWARE)
12: CC6 (SOFTWARE)
13: CC7 (SOFTWARE)
14: CC8 (SOFTWARE)
15: CC9 (SOFTWARE)
16: DC1 (SOFTWARE)
17: DC2 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
01
AC5
SOFTWARE
BMA A:1104 , HOH A:1208 , HIS B:57
BINDING SITE FOR RESIDUE BMA A 1105
02
AC7
SOFTWARE
LEU A:94 , ASN A:97 , GLU B:90
BINDING SITE FOR RESIDUE NAG A 1107
03
BC6
SOFTWARE
TRP B:86 , ASN B:88 , NAG B:203 , MAN B:204 , BMA B:205
BINDING SITE FOR RESIDUE BMA B 201
04
BC7
SOFTWARE
ASN B:4 , PRO B:36 , ASN B:85 , NAG B:203
BINDING SITE FOR RESIDUE NAG B 202
05
BC8
SOFTWARE
ASN B:85 , TRP B:86 , TYR B:87 , BMA B:201 , NAG B:202
BINDING SITE FOR RESIDUE NAG B 203
06
BC9
SOFTWARE
TYR B:87 , BMA B:201 , MAN B:207
BINDING SITE FOR RESIDUE MAN B 204
07
CC1
SOFTWARE
ASN B:88 , GLU B:90 , PRO B:91 , BMA B:201 , BMA B:206
BINDING SITE FOR RESIDUE BMA B 205
08
CC2
SOFTWARE
HIS A:57 , BMA B:205
BINDING SITE FOR RESIDUE BMA B 206
09
CC3
SOFTWARE
MAN B:204
BINDING SITE FOR RESIDUE MAN B 207
10
CC4
SOFTWARE
GLU A:90 , ASN B:97 , ALA B:101 , NAG B:209
BINDING SITE FOR RESIDUE NAG B 208
11
CC5
SOFTWARE
LYS A:98 , NAG B:208
BINDING SITE FOR RESIDUE NAG B 209
12
CC6
SOFTWARE
LYS A:142 , ASN B:9 , ILE B:18 , GLN B:19 , LYS B:32 , ALA B:62 , C B:213
BINDING SITE FOR RESIDUE U B 210
13
CC7
SOFTWARE
ASN B:13 , NAG B:212
BINDING SITE FOR RESIDUE NAG B 211
14
CC8
SOFTWARE
NAG B:211
BINDING SITE FOR RESIDUE NAG B 212
15
CC9
SOFTWARE
ALA B:62 , SER B:63 , GLU B:64 , LYS B:65 , U B:210
BINDING SITE FOR RESIDUE C B 213
16
DC1
SOFTWARE
LYS B:32 , TRP B:35 , HIS B:76 , GLU B:77 , LYS B:80 , HIS B:81
BINDING SITE FOR RESIDUE SO4 B 214
17
DC2
SOFTWARE
HIS B:76 , ASN B:79
BINDING SITE FOR RESIDUE SO4 B 215
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
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Sorry, no Info available
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PROSITE Patterns/Profiles
(1, 1)
Info
All PROSITE Patterns/Profiles
1: RNASE_T2_2 (B:73-84)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
RNASE_T2_2
PS00531
Ribonuclease T2 family histidine active site 2.
POLG_BVDVC
341-352
1
-
B:73-84
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Exons
(0, 0)
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
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SCOP Domains
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CATH Domains
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Pfam Domains
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Chain B
Asymmetric Unit 1
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Asym.Unit (69 KB)
Header - Asym.Unit
Biol.Unit 1 (32 KB)
Header - Biol.Unit 1
Biol.Unit 2 (32 KB)
Header - Biol.Unit 2
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